version 1.0
Sinorhizobium medicae WSM419, complete genome - 1..3781904 3529 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 867 58.69 -1 930911..931537 + 208 150396095 clpP Smed_0872 - ATP-dependent Clp protease proteolytic subunit 868 59.62 0 931831..933108 + 425 150396096 clpX Smed_0873 - ATP-dependent protease ATP-binding subunit 869 60.26 0 933551..935971 + 806 150396097 - Smed_0874 - ATP-dependent protease La 870 60.07 0 936193..936465 + 90 150396098 - Smed_0875 - histone family protein DNA-binding protein 871 62.25 0 936710..938905 + 731 150396099 - Smed_0876 - hypothetical protein 872 58.96 0 939006..939485 - 159 150396100 - Smed_0877 - MarR family transcriptional regulator 873 62.83 0 939774..941051 + 425 150396101 - Smed_0878 - metallophosphoesterase 874 67.07 +1 941051..944512 + 1153 150396102 - Smed_0879 - hypothetical protein 875 68.17 +2 944588..944986 + 132 150396103 - Smed_0880 - cupin 2 domain-containing protein 876 55.78 -2 945065..945367 + 100 150396104 - Smed_0881 - hypothetical protein 877 59.60 0 945395..945748 + 117 150396105 - Smed_0882 - hypothetical protein 878 62.06 0 945840..947315 - 491 150396106 - Smed_0883 - HlyD family type I secretion membrane fusion protein 879 62.86 0 947312..949492 - 726 150396107 - Smed_0884 - type I secretion system ATPase 880 58.26 -1 949610..951976 - 788 150396108 - Smed_0885 - hypothetical protein 881 64.41 0 951802..958143 - 2113 150396109 - Smed_0886 - hypothetical protein 882 49.31 -2 958178..958978 - 266 150396110 - Smed_0887 - hypothetical protein 883 54.64 -2 960392..960757 + 121 150396111 - Smed_0888 - NADH dehydrogenase subunit A 884 62.52 0 960748..961326 + 192 150396112 - Smed_0889 - NADH dehydrogenase subunit B 885 59.90 0 961345..961950 + 201 150396113 - Smed_0890 - NADH dehydrogenase subunit C 886 62.13 0 962007..963197 + 396 150396114 - Smed_0891 - NADH dehydrogenase subunit D 887 61.96 0 963197..963451 + 84 150396115 - Smed_0892 - putative signal peptide protein 888 62.77 0 963468..964289 + 273 150396116 - Smed_0893 - NADH dehydrogenase subunit E 889 62.61 0 964304..965608 + 434 150396117 - Smed_0894 - NADH dehydrogenase I subunit F 890 66.82 +1 965614..966276 + 220 150396118 - Smed_0895 - putative NADH dehydrogenase I chain E 891 63.64 0 966399..968480 + 693 150396119 - Smed_0896 - NADH dehydrogenase subunit G 892 60.44 0 968501..969544 + 347 150396120 - Smed_0897 - NADH dehydrogenase subunit H 893 60.77 0 969609..970100 + 163 150396121 - Smed_0898 - NADH dehydrogenase subunit I 894 60.39 0 970197..970865 + 222 150396122 - Smed_0899 - NADH dehydrogenase subunit J 895 55.99 -2 970895..971203 + 102 150396123 - Smed_0900 - NADH dehydrogenase subunit K 896 60.45 0 971211..973205 + 664 150396124 - Smed_0901 - NADH dehydrogenase subunit L 897 59.99 0 973205..974716 + 503 150396125 - Smed_0902 - NADH dehydrogenase subunit M 898 61.19 0 974736..976178 + 480 150396126 - Smed_0903 - NADH dehydrogenase subunit N 899 65.62 +1 976175..976942 + 255 150396127 - Smed_0904 - biotin--acetyl-CoA-carboxylase ligase 900 62.35 0 976968..978635 + 555 150396128 - Smed_0905 - beta-lactamase domain-containing protein 901 60.49 0 978692..979096 + 134 150396129 - Smed_0906 - methylmalonyl-CoA epimerase 902 57.41 -1 979229..979498 + 89 150396130 - Smed_0907 - hypothetical protein 903 62.34 0 980177..981469 + 430 150396131 - Smed_0908 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase 904 58.48 -1 981466..981795 - 109 150396132 - Smed_0909 - Rieske (2Fe-2S) domain-containing protein 905 64.33 0 981897..983138 - 413 150396133 - Smed_0910 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase 906 55.16 -2 983298..984296 - 332 150396134 - Smed_0911 - sterol desaturase 907 59.88 0 984289..984450 - 53 150396135 - Smed_0912 - hypothetical protein 908 60.44 0 984447..985313 - 288 150396136 - Smed_0913 - xylose isomerase domain-containing protein 909 60.53 0 985404..986414 - 336 150396137 - Smed_0914 - monosaccharide-transporting ATPase 910 58.33 -1 986411..987166 - 251 150396138 - Smed_0915 - ABC transporter related 911 60.51 0 987231..988253 - 340 150396139 - Smed_0916 - putative periplasmic binding ABC transporter protein 912 57.50 -1 988586..989578 - 330 150396140 - Smed_0917 - regulatory protein LacI 913 59.74 0 990004..991332 + 442 150396141 - Smed_0918 - prolyl-tRNA synthetase 914 61.33 0 991351..992661 + 436 150396142 - Smed_0919 - LolC/E family lipoprotein releasing system, transmembrane protein 915 63.76 0 992679..993365 + 228 150396143 - Smed_0920 - ABC transporter related 916 61.61 0 993789..997286 + 1165 150396144 dnaE Smed_0921 - DNA polymerase III subunit alpha 917 61.78 0 997329..998555 - 408 150396145 - Smed_0922 - hypothetical protein 918 62.95 0 998681..999973 - 430 150396146 - Smed_0923 - DNA polymerase IV 919 60.81 0 1000147..1000419 - 90 150396147 - Smed_0924 - hypothetical protein 920 54.03 -2 1000576..1000947 + 123 150396148 - Smed_0925 - response regulator receiver protein 921 60.89 0 1000965..1002332 + 455 150396149 pleD Smed_0926 - response regulator PleD 922 52.38 -2 1002858..1003025 - 55 150396150 rpmG Smed_0927 - 50S ribosomal protein L33 923 61.77 0 1003121..1004305 - 394 150396151 - Smed_0928 - major facilitator transporter 924 62.76 0 1004317..1005033 - 238 150396152 - Smed_0929 - NUDIX hydrolase 925 62.94 0 1005030..1005485 - 151 150396153 - Smed_0930 - hypothetical protein 926 63.54 0 1005520..1007889 - 789 150396154 - Smed_0931 - ribonuclease R 927 61.97 0 1007892..1010636 - 914 150396155 - Smed_0932 - DNA topoisomerase I 928 66.41 +1 1010787..1011938 - 383 150396156 - Smed_0933 - DNA protecting protein DprA 929 61.93 0 1011938..1012549 - 203 150396157 - Smed_0934 - putative glycerol-3-phosphate acyltransferase PlsY 930 62.95 0 1012579..1013871 - 430 150396158 - Smed_0935 - dihydroorotase 931 62.63 0 1013868..1014809 - 313 150396159 pyrB Smed_0936 - aspartate carbamoyltransferase catalytic subunit 932 63.58 0 1014994..1016646 + 550 150396160 - Smed_0937 - acyl-CoA dehydrogenase domain-containing protein 933 60.68 0 1016628..1017563 - 311 150396161 - Smed_0938 - auxin efflux carrier 934 57.92 -1 1017734..1017916 + 60 150396162 - Smed_0939 - hypothetical protein 935 61.61 0 1017913..1018248 + 111 150396163 - Smed_0940 - hypothetical protein 936 62.65 0 1018182..1018679 - 165 150396164 - Smed_0941 - Holliday junction resolvase YqgF 937 60.14 0 1018798..1019502 + 234 150396165 - Smed_0942 - metal-dependent hydrolase 938 59.03 0 1019598..1019885 + 95 150396166 - Smed_0943 - glutamyl-tRNA(Gln) amidotransferase, C subunit 939 63.09 0 1019935..1021416 + 493 150396167 gatA Smed_0944 - aspartyl/glutamyl-tRNA amidotransferase subunit A 940 55.69 -2 1021519..1021764 - 81 150396168 - Smed_0945 - hypothetical protein 941 60.48 0 1022099..1023601 + 500 150396169 gatB Smed_0946 - aspartyl/glutamyl-tRNA amidotransferase subunit B 942 58.73 -1 1023598..1024101 + 167 150396170 - Smed_0947 - GCN5-related N-acetyltransferase 943 62.63 0 1024254..1024649 + 131 150396171 - Smed_0948 - NADH dehydrogenase 944 61.81 0 1024832..1025284 + 150 150396172 - Smed_0949 - hypothetical protein 945 58.70 -1 1025746..1026360 - 204 150396173 aat Smed_0951 - leucyl/phenylalanyl-tRNA--protein transferase 946 60.12 0 1026370..1027713 - 447 150396174 - Smed_0952 - acetyl-CoA carboxylase biotin carboxylase subunit 947 62.89 0 1027726..1028202 - 158 150396175 - Smed_0953 - acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 948 55.48 -2 1028226..1028672 - 148 150396176 - Smed_0954 - 3-dehydroquinate dehydratase 949 61.46 0 1028829..1029596 - 255 150396177 - Smed_0955 - DSBA oxidoreductase 950 61.80 0 1031233..1034067 - 944 150396178 - Smed_0957 - ribonuclease 951 56.19 -1 1034324..1034638 + 104 150396179 - Smed_0958 - hypothetical protein 952 61.47 0 1034795..1036045 + 416 150396180 - Smed_0959 - N-acetylmuramoyl-L-alanine amidase 953 61.41 0 1036481..1038934 + 817 150396181 - Smed_0960 - 1A family penicillin-binding protein 954 61.90 0 1039191..1040219 + 342 150396182 - Smed_0961 - peptide chain release factor 2 955 61.08 0 1040332..1040832 - 166 150396183 - Smed_0962 - hypothetical protein 956 59.95 0 1040919..1041692 - 257 150396184 ppnK Smed_0963 - inorganic polyphosphate/ATP-NAD kinase 957 61.52 0 1042293..1042661 + 122 150396185 - Smed_0964 - hypothetical protein 958 64.02 0 1042863..1043807 - 314 150396186 - Smed_0965 - LysR family transcriptional regulator 959 60.55 0 1044014..1044634 + 206 150396187 - Smed_0966 - NAD(P)H dehydrogenase (quinone) 960 64.21 0 1044836..1045120 + 94 150396188 - Smed_0967 - hypothetical protein 961 64.27 0 1045110..1045985 - 291 150396189 - Smed_0968 - RNA methyltransferase 962 61.31 0 1046647..1047822 + 391 150396190 - Smed_0969 - elongation factor Tu 963 62.46 0 1048100..1048765 + 221 150396191 - Smed_0970 - hypothetical protein 964 56.60 -1 1048866..1049759 + 297 150396192 - Smed_0971 - NAD-dependent epimerase/dehydratase 965 52.74 -2 1050192..1050392 + 66 150396193 secE Smed_0972 - preprotein translocase subunit SecE 966 57.63 -1 1050409..1050939 + 176 150396194 nusG Smed_0973 - transcription antitermination protein NusG 61.69 MEAN 2.82 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.