IslandPath Analysis: Sinorhizobium medicae WSM419



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 61.69   STD DEV: 2.82
Sinorhizobium medicae WSM419, complete genome - 1..3781904
3529 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
844	 61.16	0	906704..907738	+	344	150396072	-	Smed_0849	-	alcohol dehydrogenase
845	 60.97	0	907846..909126	-	426	150396073	-	Smed_0850	-	hypothetical protein
846	 59.37	0	909123..910766	-	547	150396074	-	Smed_0851	-	undecaprenyl-phosphate galactose phosphotransferase
847	 62.65	0	910744..911913	-	389	150396075	-	Smed_0852	-	glycosyl transferase group 1
848	 64.24	0	911919..912494	-	191	150396076	-	Smed_0853	-	polysaccharide export protein
849	 61.78	0	912695..914824	+	709	150396077	-	Smed_0854	-	exopolysaccharide transport protein family
850	 61.07	0	914880..916130	-	416	150396078	-	Smed_0855	-	hypothetical protein
851	 61.00	0	916281..917021	-	246	150396079	-	Smed_0856	-	metallophosphoesterase
852	 58.67	-1	917041..917265	-	74	150396080	-	Smed_0857	-	putative signal peptide protein
853	 62.23	0	917444..918547	+	367	150396081	-	Smed_0858	-	cytochrome oxidase assembly
854	 62.17	0	918620..919552	-	310	150396082	-	Smed_0859	-	N-acetyl-gamma-glutamyl-phosphate reductase
855	 62.49	0	919646..920602	-	318	150396083	-	Smed_0860	-	agmatinase
856	 64.96	+1	920755..921222	-	155	150396084	rpsI	Smed_0861	-	30S ribosomal protein S9
857	 61.08	0	921225..921689	-	154	150396085	rplM	Smed_0862	-	50S ribosomal protein L13
858	 62.16	0	921895..922338	-	147	150396086	-	Smed_0863	-	thioesterase superfamily protein
859	 61.19	0	922502..923323	+	273	150396087	-	Smed_0864	-	enoyl-CoA hydratase
860	 64.64	+1	923387..924274	-	295	150396088	-	Smed_0865	-	hypothetical protein
861	 64.60	+1	924507..924941	+	144	150396089	-	Smed_0866	-	CoA-binding domain-containing protein
862	 61.83	0	924979..926259	+	426	150396090	-	Smed_0867	-	O-acetylhomoserine aminocarboxypropyltransferase
863	 58.77	-1	926286..926627	+	113	150396091	-	Smed_0868	-	protein of unknown function DUF861 cupin_3
864	 61.54	0	926689..927936	-	415	150396092	-	Smed_0869	-	cytochrome P450
865	 64.47	0	928108..928971	+	287	150396093	-	Smed_0870	-	endonuclease/exonuclease/phosphatase
866	 61.93	0	929076..930638	+	520	150396094	-	Smed_0871	-	phospholipase D/transphosphatidylase
867	 58.69	-1	930911..931537	+	208	150396095	clpP	Smed_0872	-	ATP-dependent Clp protease proteolytic subunit
868	 59.62	0	931831..933108	+	425	150396096	clpX	Smed_0873	-	ATP-dependent protease ATP-binding subunit
869	 60.26	0	933551..935971	+	806	150396097	-	Smed_0874	-	ATP-dependent protease La
870	 60.07	0	936193..936465	+	90	150396098	-	Smed_0875	-	histone family protein DNA-binding protein
871	 62.25	0	936710..938905	+	731	150396099	-	Smed_0876	-	hypothetical protein
872	 58.96	0	939006..939485	-	159	150396100	-	Smed_0877	-	MarR family transcriptional regulator
873	 62.83	0	939774..941051	+	425	150396101	-	Smed_0878	-	metallophosphoesterase
874	 67.07	+1	941051..944512	+	1153	150396102	-	Smed_0879	-	hypothetical protein
875	 68.17	+2	944588..944986	+	132	150396103	-	Smed_0880	-	cupin 2 domain-containing protein
876	 55.78	-2	945065..945367	+	100	150396104	-	Smed_0881	-	hypothetical protein
877	 59.60	0	945395..945748	+	117	150396105	-	Smed_0882	-	hypothetical protein
878	 62.06	0	945840..947315	-	491	150396106	-	Smed_0883	-	HlyD family type I secretion membrane fusion protein
879	 62.86	0	947312..949492	-	726	150396107	-	Smed_0884	-	type I secretion system ATPase
880	 58.26	-1	949610..951976	-	788	150396108	-	Smed_0885	-	hypothetical protein
881	 64.41	0	951802..958143	-	2113	150396109	-	Smed_0886	-	hypothetical protein
882	 49.31	-2	958178..958978	-	266	150396110	-	Smed_0887	-	hypothetical protein
883	 54.64	-2	960392..960757	+	121	150396111	-	Smed_0888	-	NADH dehydrogenase subunit A
884	 62.52	0	960748..961326	+	192	150396112	-	Smed_0889	-	NADH dehydrogenase subunit B
885	 59.90	0	961345..961950	+	201	150396113	-	Smed_0890	-	NADH dehydrogenase subunit C
886	 62.13	0	962007..963197	+	396	150396114	-	Smed_0891	-	NADH dehydrogenase subunit D
887	 61.96	0	963197..963451	+	84	150396115	-	Smed_0892	-	putative signal peptide protein
888	 62.77	0	963468..964289	+	273	150396116	-	Smed_0893	-	NADH dehydrogenase subunit E
889	 62.61	0	964304..965608	+	434	150396117	-	Smed_0894	-	NADH dehydrogenase I subunit F
890	 66.82	+1	965614..966276	+	220	150396118	-	Smed_0895	-	putative NADH dehydrogenase I chain E
891	 63.64	0	966399..968480	+	693	150396119	-	Smed_0896	-	NADH dehydrogenase subunit G
892	 60.44	0	968501..969544	+	347	150396120	-	Smed_0897	-	NADH dehydrogenase subunit H
893	 60.77	0	969609..970100	+	163	150396121	-	Smed_0898	-	NADH dehydrogenase subunit I
894	 60.39	0	970197..970865	+	222	150396122	-	Smed_0899	-	NADH dehydrogenase subunit J
895	 55.99	-2	970895..971203	+	102	150396123	-	Smed_0900	-	NADH dehydrogenase subunit K
896	 60.45	0	971211..973205	+	664	150396124	-	Smed_0901	-	NADH dehydrogenase subunit L
897	 59.99	0	973205..974716	+	503	150396125	-	Smed_0902	-	NADH dehydrogenase subunit M
898	 61.19	0	974736..976178	+	480	150396126	-	Smed_0903	-	NADH dehydrogenase subunit N
899	 65.62	+1	976175..976942	+	255	150396127	-	Smed_0904	-	biotin--acetyl-CoA-carboxylase ligase
900	 62.35	0	976968..978635	+	555	150396128	-	Smed_0905	-	beta-lactamase domain-containing protein
901	 60.49	0	978692..979096	+	134	150396129	-	Smed_0906	-	methylmalonyl-CoA epimerase
902	 57.41	-1	979229..979498	+	89	150396130	-	Smed_0907	-	hypothetical protein
903	 62.34	0	980177..981469	+	430	150396131	-	Smed_0908	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
904	 58.48	-1	981466..981795	-	109	150396132	-	Smed_0909	-	Rieske (2Fe-2S) domain-containing protein
905	 64.33	0	981897..983138	-	413	150396133	-	Smed_0910	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
906	 55.16	-2	983298..984296	-	332	150396134	-	Smed_0911	-	sterol desaturase
907	 59.88	0	984289..984450	-	53	150396135	-	Smed_0912	-	hypothetical protein
908	 60.44	0	984447..985313	-	288	150396136	-	Smed_0913	-	xylose isomerase domain-containing protein
909	 60.53	0	985404..986414	-	336	150396137	-	Smed_0914	-	monosaccharide-transporting ATPase
910	 58.33	-1	986411..987166	-	251	150396138	-	Smed_0915	-	ABC transporter related
911	 60.51	0	987231..988253	-	340	150396139	-	Smed_0916	-	putative periplasmic binding ABC transporter protein
912	 57.50	-1	988586..989578	-	330	150396140	-	Smed_0917	-	regulatory protein LacI
913	 59.74	0	990004..991332	+	442	150396141	-	Smed_0918	-	prolyl-tRNA synthetase
914	 61.33	0	991351..992661	+	436	150396142	-	Smed_0919	-	LolC/E family lipoprotein releasing system, transmembrane protein
915	 63.76	0	992679..993365	+	228	150396143	-	Smed_0920	-	ABC transporter related
916	 61.61	0	993789..997286	+	1165	150396144	dnaE	Smed_0921	-	DNA polymerase III subunit alpha
917	 61.78	0	997329..998555	-	408	150396145	-	Smed_0922	-	hypothetical protein
918	 62.95	0	998681..999973	-	430	150396146	-	Smed_0923	-	DNA polymerase IV
919	 60.81	0	1000147..1000419	-	90	150396147	-	Smed_0924	-	hypothetical protein
920	 54.03	-2	1000576..1000947	+	123	150396148	-	Smed_0925	-	response regulator receiver protein
921	 60.89	0	1000965..1002332	+	455	150396149	pleD	Smed_0926	-	response regulator PleD
922	 52.38	-2	1002858..1003025	-	55	150396150	rpmG	Smed_0927	-	50S ribosomal protein L33
923	 61.77	0	1003121..1004305	-	394	150396151	-	Smed_0928	-	major facilitator transporter
924	 62.76	0	1004317..1005033	-	238	150396152	-	Smed_0929	-	NUDIX hydrolase
925	 62.94	0	1005030..1005485	-	151	150396153	-	Smed_0930	-	hypothetical protein
926	 63.54	0	1005520..1007889	-	789	150396154	-	Smed_0931	-	ribonuclease R
927	 61.97	0	1007892..1010636	-	914	150396155	-	Smed_0932	-	DNA topoisomerase I
928	 66.41	+1	1010787..1011938	-	383	150396156	-	Smed_0933	-	DNA protecting protein DprA
929	 61.93	0	1011938..1012549	-	203	150396157	-	Smed_0934	-	putative glycerol-3-phosphate acyltransferase PlsY
930	 62.95	0	1012579..1013871	-	430	150396158	-	Smed_0935	-	dihydroorotase
931	 62.63	0	1013868..1014809	-	313	150396159	pyrB	Smed_0936	-	aspartate carbamoyltransferase catalytic subunit
932	 63.58	0	1014994..1016646	+	550	150396160	-	Smed_0937	-	acyl-CoA dehydrogenase domain-containing protein
933	 60.68	0	1016628..1017563	-	311	150396161	-	Smed_0938	-	auxin efflux carrier
934	 57.92	-1	1017734..1017916	+	60	150396162	-	Smed_0939	-	hypothetical protein
935	 61.61	0	1017913..1018248	+	111	150396163	-	Smed_0940	-	hypothetical protein
936	 62.65	0	1018182..1018679	-	165	150396164	-	Smed_0941	-	Holliday junction resolvase YqgF
937	 60.14	0	1018798..1019502	+	234	150396165	-	Smed_0942	-	metal-dependent hydrolase
938	 59.03	0	1019598..1019885	+	95	150396166	-	Smed_0943	-	glutamyl-tRNA(Gln) amidotransferase, C subunit
939	 63.09	0	1019935..1021416	+	493	150396167	gatA	Smed_0944	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
940	 55.69	-2	1021519..1021764	-	81	150396168	-	Smed_0945	-	hypothetical protein
941	 60.48	0	1022099..1023601	+	500	150396169	gatB	Smed_0946	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
942	 58.73	-1	1023598..1024101	+	167	150396170	-	Smed_0947	-	GCN5-related N-acetyltransferase
943	 62.63	0	1024254..1024649	+	131	150396171	-	Smed_0948	-	NADH dehydrogenase
61.69	MEAN

2.82	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.