version 1.0
Sinorhizobium medicae WSM419, complete genome - 1..3781904 3529 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 841 60.40 0 903957..905057 + 366 150396069 - Smed_0846 - glucose sorbosone dehydrogenase 842 60.39 0 905146..905607 + 153 150396070 - Smed_0847 - cupin 2 domain-containing protein 843 54.60 -2 905941..906114 - 57 150396071 - Smed_0848 - hypothetical protein 844 61.16 0 906704..907738 + 344 150396072 - Smed_0849 - alcohol dehydrogenase 845 60.97 0 907846..909126 - 426 150396073 - Smed_0850 - hypothetical protein 846 59.37 0 909123..910766 - 547 150396074 - Smed_0851 - undecaprenyl-phosphate galactose phosphotransferase 847 62.65 0 910744..911913 - 389 150396075 - Smed_0852 - glycosyl transferase group 1 848 64.24 0 911919..912494 - 191 150396076 - Smed_0853 - polysaccharide export protein 849 61.78 0 912695..914824 + 709 150396077 - Smed_0854 - exopolysaccharide transport protein family 850 61.07 0 914880..916130 - 416 150396078 - Smed_0855 - hypothetical protein 851 61.00 0 916281..917021 - 246 150396079 - Smed_0856 - metallophosphoesterase 852 58.67 -1 917041..917265 - 74 150396080 - Smed_0857 - putative signal peptide protein 853 62.23 0 917444..918547 + 367 150396081 - Smed_0858 - cytochrome oxidase assembly 854 62.17 0 918620..919552 - 310 150396082 - Smed_0859 - N-acetyl-gamma-glutamyl-phosphate reductase 855 62.49 0 919646..920602 - 318 150396083 - Smed_0860 - agmatinase 856 64.96 +1 920755..921222 - 155 150396084 rpsI Smed_0861 - 30S ribosomal protein S9 857 61.08 0 921225..921689 - 154 150396085 rplM Smed_0862 - 50S ribosomal protein L13 858 62.16 0 921895..922338 - 147 150396086 - Smed_0863 - thioesterase superfamily protein 859 61.19 0 922502..923323 + 273 150396087 - Smed_0864 - enoyl-CoA hydratase 860 64.64 +1 923387..924274 - 295 150396088 - Smed_0865 - hypothetical protein 861 64.60 +1 924507..924941 + 144 150396089 - Smed_0866 - CoA-binding domain-containing protein 862 61.83 0 924979..926259 + 426 150396090 - Smed_0867 - O-acetylhomoserine aminocarboxypropyltransferase 863 58.77 -1 926286..926627 + 113 150396091 - Smed_0868 - protein of unknown function DUF861 cupin_3 864 61.54 0 926689..927936 - 415 150396092 - Smed_0869 - cytochrome P450 865 64.47 0 928108..928971 + 287 150396093 - Smed_0870 - endonuclease/exonuclease/phosphatase 866 61.93 0 929076..930638 + 520 150396094 - Smed_0871 - phospholipase D/transphosphatidylase 867 58.69 -1 930911..931537 + 208 150396095 clpP Smed_0872 - ATP-dependent Clp protease proteolytic subunit 868 59.62 0 931831..933108 + 425 150396096 clpX Smed_0873 - ATP-dependent protease ATP-binding subunit 869 60.26 0 933551..935971 + 806 150396097 - Smed_0874 - ATP-dependent protease La 870 60.07 0 936193..936465 + 90 150396098 - Smed_0875 - histone family protein DNA-binding protein 871 62.25 0 936710..938905 + 731 150396099 - Smed_0876 - hypothetical protein 872 58.96 0 939006..939485 - 159 150396100 - Smed_0877 - MarR family transcriptional regulator 873 62.83 0 939774..941051 + 425 150396101 - Smed_0878 - metallophosphoesterase 874 67.07 +1 941051..944512 + 1153 150396102 - Smed_0879 - hypothetical protein 875 68.17 +2 944588..944986 + 132 150396103 - Smed_0880 - cupin 2 domain-containing protein 876 55.78 -2 945065..945367 + 100 150396104 - Smed_0881 - hypothetical protein 877 59.60 0 945395..945748 + 117 150396105 - Smed_0882 - hypothetical protein 878 62.06 0 945840..947315 - 491 150396106 - Smed_0883 - HlyD family type I secretion membrane fusion protein 879 62.86 0 947312..949492 - 726 150396107 - Smed_0884 - type I secretion system ATPase 880 58.26 -1 949610..951976 - 788 150396108 - Smed_0885 - hypothetical protein 881 64.41 0 951802..958143 - 2113 150396109 - Smed_0886 - hypothetical protein 882 49.31 -2 958178..958978 - 266 150396110 - Smed_0887 - hypothetical protein 883 54.64 -2 960392..960757 + 121 150396111 - Smed_0888 - NADH dehydrogenase subunit A 884 62.52 0 960748..961326 + 192 150396112 - Smed_0889 - NADH dehydrogenase subunit B 885 59.90 0 961345..961950 + 201 150396113 - Smed_0890 - NADH dehydrogenase subunit C 886 62.13 0 962007..963197 + 396 150396114 - Smed_0891 - NADH dehydrogenase subunit D 887 61.96 0 963197..963451 + 84 150396115 - Smed_0892 - putative signal peptide protein 888 62.77 0 963468..964289 + 273 150396116 - Smed_0893 - NADH dehydrogenase subunit E 889 62.61 0 964304..965608 + 434 150396117 - Smed_0894 - NADH dehydrogenase I subunit F 890 66.82 +1 965614..966276 + 220 150396118 - Smed_0895 - putative NADH dehydrogenase I chain E 891 63.64 0 966399..968480 + 693 150396119 - Smed_0896 - NADH dehydrogenase subunit G 892 60.44 0 968501..969544 + 347 150396120 - Smed_0897 - NADH dehydrogenase subunit H 893 60.77 0 969609..970100 + 163 150396121 - Smed_0898 - NADH dehydrogenase subunit I 894 60.39 0 970197..970865 + 222 150396122 - Smed_0899 - NADH dehydrogenase subunit J 895 55.99 -2 970895..971203 + 102 150396123 - Smed_0900 - NADH dehydrogenase subunit K 896 60.45 0 971211..973205 + 664 150396124 - Smed_0901 - NADH dehydrogenase subunit L 897 59.99 0 973205..974716 + 503 150396125 - Smed_0902 - NADH dehydrogenase subunit M 898 61.19 0 974736..976178 + 480 150396126 - Smed_0903 - NADH dehydrogenase subunit N 899 65.62 +1 976175..976942 + 255 150396127 - Smed_0904 - biotin--acetyl-CoA-carboxylase ligase 900 62.35 0 976968..978635 + 555 150396128 - Smed_0905 - beta-lactamase domain-containing protein 901 60.49 0 978692..979096 + 134 150396129 - Smed_0906 - methylmalonyl-CoA epimerase 902 57.41 -1 979229..979498 + 89 150396130 - Smed_0907 - hypothetical protein 903 62.34 0 980177..981469 + 430 150396131 - Smed_0908 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase 904 58.48 -1 981466..981795 - 109 150396132 - Smed_0909 - Rieske (2Fe-2S) domain-containing protein 905 64.33 0 981897..983138 - 413 150396133 - Smed_0910 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase 906 55.16 -2 983298..984296 - 332 150396134 - Smed_0911 - sterol desaturase 907 59.88 0 984289..984450 - 53 150396135 - Smed_0912 - hypothetical protein 908 60.44 0 984447..985313 - 288 150396136 - Smed_0913 - xylose isomerase domain-containing protein 909 60.53 0 985404..986414 - 336 150396137 - Smed_0914 - monosaccharide-transporting ATPase 910 58.33 -1 986411..987166 - 251 150396138 - Smed_0915 - ABC transporter related 911 60.51 0 987231..988253 - 340 150396139 - Smed_0916 - putative periplasmic binding ABC transporter protein 912 57.50 -1 988586..989578 - 330 150396140 - Smed_0917 - regulatory protein LacI 913 59.74 0 990004..991332 + 442 150396141 - Smed_0918 - prolyl-tRNA synthetase 914 61.33 0 991351..992661 + 436 150396142 - Smed_0919 - LolC/E family lipoprotein releasing system, transmembrane protein 915 63.76 0 992679..993365 + 228 150396143 - Smed_0920 - ABC transporter related 916 61.61 0 993789..997286 + 1165 150396144 dnaE Smed_0921 - DNA polymerase III subunit alpha 917 61.78 0 997329..998555 - 408 150396145 - Smed_0922 - hypothetical protein 918 62.95 0 998681..999973 - 430 150396146 - Smed_0923 - DNA polymerase IV 919 60.81 0 1000147..1000419 - 90 150396147 - Smed_0924 - hypothetical protein 920 54.03 -2 1000576..1000947 + 123 150396148 - Smed_0925 - response regulator receiver protein 921 60.89 0 1000965..1002332 + 455 150396149 pleD Smed_0926 - response regulator PleD 922 52.38 -2 1002858..1003025 - 55 150396150 rpmG Smed_0927 - 50S ribosomal protein L33 923 61.77 0 1003121..1004305 - 394 150396151 - Smed_0928 - major facilitator transporter 924 62.76 0 1004317..1005033 - 238 150396152 - Smed_0929 - NUDIX hydrolase 925 62.94 0 1005030..1005485 - 151 150396153 - Smed_0930 - hypothetical protein 926 63.54 0 1005520..1007889 - 789 150396154 - Smed_0931 - ribonuclease R 927 61.97 0 1007892..1010636 - 914 150396155 - Smed_0932 - DNA topoisomerase I 928 66.41 +1 1010787..1011938 - 383 150396156 - Smed_0933 - DNA protecting protein DprA 929 61.93 0 1011938..1012549 - 203 150396157 - Smed_0934 - putative glycerol-3-phosphate acyltransferase PlsY 930 62.95 0 1012579..1013871 - 430 150396158 - Smed_0935 - dihydroorotase 931 62.63 0 1013868..1014809 - 313 150396159 pyrB Smed_0936 - aspartate carbamoyltransferase catalytic subunit 932 63.58 0 1014994..1016646 + 550 150396160 - Smed_0937 - acyl-CoA dehydrogenase domain-containing protein 933 60.68 0 1016628..1017563 - 311 150396161 - Smed_0938 - auxin efflux carrier 934 57.92 -1 1017734..1017916 + 60 150396162 - Smed_0939 - hypothetical protein 935 61.61 0 1017913..1018248 + 111 150396163 - Smed_0940 - hypothetical protein 936 62.65 0 1018182..1018679 - 165 150396164 - Smed_0941 - Holliday junction resolvase YqgF 937 60.14 0 1018798..1019502 + 234 150396165 - Smed_0942 - metal-dependent hydrolase 938 59.03 0 1019598..1019885 + 95 150396166 - Smed_0943 - glutamyl-tRNA(Gln) amidotransferase, C subunit 939 63.09 0 1019935..1021416 + 493 150396167 gatA Smed_0944 - aspartyl/glutamyl-tRNA amidotransferase subunit A 940 55.69 -2 1021519..1021764 - 81 150396168 - Smed_0945 - hypothetical protein 61.69 MEAN 2.82 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.