IslandPath Analysis: Sinorhizobium medicae WSM419



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 61.69   STD DEV: 2.82
Sinorhizobium medicae WSM419, complete genome - 1..3781904
3529 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
811	 60.66	0	878050..879381	+	443	150396039	-	Smed_0815	-	peptidoglycan binding domain-containing protein
812	 61.27	0	879563..880858	+	431	150396040	glyA	Smed_0816	-	serine hydroxymethyltransferase
813	 61.60	0	880871..881344	+	157	150396041	-	Smed_0817	-	transcriptional regulator NrdR
814	 63.32	0	881361..882557	+	398	150396042	-	Smed_0818	-	riboflavin biosynthesis protein RibD
815	 63.45	0	882557..883177	+	206	150396043	-	Smed_0819	-	riboflavin synthase subunit alpha
816	 62.25	0	883300..883842	-	180	150396044	-	Smed_0820	-	GCN5-related N-acetyltransferase
817	 62.12	0	884070..884531	+	153	150396045	ribH	Smed_0821	-	riboflavin synthase subunit beta
818	 61.08	0	884528..885010	+	160	150396046	nusB	Smed_0822	-	transcription antitermination protein NusB
819	 63.90	0	885017..886243	+	408	150396047	-	Smed_0823	-	major facilitator transporter
820	 62.36	0	886442..888577	+	711	150396048	hppA	Smed_0824	-	membrane-bound proton-translocating pyrophosphatase
821	 59.76	0	888702..889208	-	168	150396049	-	Smed_0825	-	SmpA/OmlA domain-containing protein
822	 59.40	0	889366..889902	+	178	150396050	-	Smed_0826	-	ubiquinol-cytochrome C chaperone
823	 61.78	0	889986..890537	+	183	150396051	-	Smed_0827	-	hypothetical protein
824	 62.16	0	890733..891776	+	347	150396052	-	Smed_0828	-	putative glycerol-3-phosphate acyltransferase PlsX
825	 63.17	0	891795..892766	+	323	150396053	-	Smed_0829	-	3-oxoacyl-(acyl carrier protein) synthase III
826	 57.23	-1	892860..893198	+	112	150396054	ihfA	Smed_0830	-	integration host factor subunit alpha
827	 58.99	0	893328..893861	+	177	150396055	-	Smed_0831	-	MerR family transcriptional regulator
828	 61.21	0	893929..894276	-	115	150396056	-	Smed_0832	-	hypothetical protein
829	 60.58	0	894514..894891	+	125	150396057	-	Smed_0833	-	hypothetical protein
830	 51.45	-2	895430..895567	+	45	150396058	-	Smed_0834	-	hypothetical protein
831	 52.24	-2	895658..896281	+	207	150396059	-	Smed_0835	-	hypothetical protein
832	 50.20	-2	896291..897025	+	244	150396060	-	Smed_0836	-	hypothetical protein
833	 59.01	0	897326..897547	-	73	150396061	-	Smed_0837	-	hypothetical protein
834	 61.84	0	897544..898164	-	206	150396062	-	Smed_0838	-	hypothetical protein
835	 61.30	0	898469..899362	-	297	150396063	-	Smed_0839	-	LysR family transcriptional regulator
836	 60.26	0	899489..899878	+	129	150396064	-	Smed_0840	-	antibiotic biosynthesis monooxygenase
837	 54.11	-2	899914..900327	+	137	150396065	-	Smed_0841	-	antibiotic biosynthesis monooxygenase
838	 62.06	0	900347..901519	+	390	150396066	-	Smed_0842	-	aldo/keto reductase
839	 62.69	0	901594..902373	+	259	150396067	-	Smed_0843	-	carboxymuconolactone decarboxylase
840	 60.53	0	902527..902901	+	124	150396068	-	Smed_0844	-	hypothetical protein
841	 60.40	0	903957..905057	+	366	150396069	-	Smed_0846	-	glucose sorbosone dehydrogenase
842	 60.39	0	905146..905607	+	153	150396070	-	Smed_0847	-	cupin 2 domain-containing protein
843	 54.60	-2	905941..906114	-	57	150396071	-	Smed_0848	-	hypothetical protein
844	 61.16	0	906704..907738	+	344	150396072	-	Smed_0849	-	alcohol dehydrogenase
845	 60.97	0	907846..909126	-	426	150396073	-	Smed_0850	-	hypothetical protein
846	 59.37	0	909123..910766	-	547	150396074	-	Smed_0851	-	undecaprenyl-phosphate galactose phosphotransferase
847	 62.65	0	910744..911913	-	389	150396075	-	Smed_0852	-	glycosyl transferase group 1
848	 64.24	0	911919..912494	-	191	150396076	-	Smed_0853	-	polysaccharide export protein
849	 61.78	0	912695..914824	+	709	150396077	-	Smed_0854	-	exopolysaccharide transport protein family
850	 61.07	0	914880..916130	-	416	150396078	-	Smed_0855	-	hypothetical protein
851	 61.00	0	916281..917021	-	246	150396079	-	Smed_0856	-	metallophosphoesterase
852	 58.67	-1	917041..917265	-	74	150396080	-	Smed_0857	-	putative signal peptide protein
853	 62.23	0	917444..918547	+	367	150396081	-	Smed_0858	-	cytochrome oxidase assembly
854	 62.17	0	918620..919552	-	310	150396082	-	Smed_0859	-	N-acetyl-gamma-glutamyl-phosphate reductase
855	 62.49	0	919646..920602	-	318	150396083	-	Smed_0860	-	agmatinase
856	 64.96	+1	920755..921222	-	155	150396084	rpsI	Smed_0861	-	30S ribosomal protein S9
857	 61.08	0	921225..921689	-	154	150396085	rplM	Smed_0862	-	50S ribosomal protein L13
858	 62.16	0	921895..922338	-	147	150396086	-	Smed_0863	-	thioesterase superfamily protein
859	 61.19	0	922502..923323	+	273	150396087	-	Smed_0864	-	enoyl-CoA hydratase
860	 64.64	+1	923387..924274	-	295	150396088	-	Smed_0865	-	hypothetical protein
861	 64.60	+1	924507..924941	+	144	150396089	-	Smed_0866	-	CoA-binding domain-containing protein
862	 61.83	0	924979..926259	+	426	150396090	-	Smed_0867	-	O-acetylhomoserine aminocarboxypropyltransferase
863	 58.77	-1	926286..926627	+	113	150396091	-	Smed_0868	-	protein of unknown function DUF861 cupin_3
864	 61.54	0	926689..927936	-	415	150396092	-	Smed_0869	-	cytochrome P450
865	 64.47	0	928108..928971	+	287	150396093	-	Smed_0870	-	endonuclease/exonuclease/phosphatase
866	 61.93	0	929076..930638	+	520	150396094	-	Smed_0871	-	phospholipase D/transphosphatidylase
867	 58.69	-1	930911..931537	+	208	150396095	clpP	Smed_0872	-	ATP-dependent Clp protease proteolytic subunit
868	 59.62	0	931831..933108	+	425	150396096	clpX	Smed_0873	-	ATP-dependent protease ATP-binding subunit
869	 60.26	0	933551..935971	+	806	150396097	-	Smed_0874	-	ATP-dependent protease La
870	 60.07	0	936193..936465	+	90	150396098	-	Smed_0875	-	histone family protein DNA-binding protein
871	 62.25	0	936710..938905	+	731	150396099	-	Smed_0876	-	hypothetical protein
872	 58.96	0	939006..939485	-	159	150396100	-	Smed_0877	-	MarR family transcriptional regulator
873	 62.83	0	939774..941051	+	425	150396101	-	Smed_0878	-	metallophosphoesterase
874	 67.07	+1	941051..944512	+	1153	150396102	-	Smed_0879	-	hypothetical protein
875	 68.17	+2	944588..944986	+	132	150396103	-	Smed_0880	-	cupin 2 domain-containing protein
876	 55.78	-2	945065..945367	+	100	150396104	-	Smed_0881	-	hypothetical protein
877	 59.60	0	945395..945748	+	117	150396105	-	Smed_0882	-	hypothetical protein
878	 62.06	0	945840..947315	-	491	150396106	-	Smed_0883	-	HlyD family type I secretion membrane fusion protein
879	 62.86	0	947312..949492	-	726	150396107	-	Smed_0884	-	type I secretion system ATPase
880	 58.26	-1	949610..951976	-	788	150396108	-	Smed_0885	-	hypothetical protein
881	 64.41	0	951802..958143	-	2113	150396109	-	Smed_0886	-	hypothetical protein
882	 49.31	-2	958178..958978	-	266	150396110	-	Smed_0887	-	hypothetical protein
883	 54.64	-2	960392..960757	+	121	150396111	-	Smed_0888	-	NADH dehydrogenase subunit A
884	 62.52	0	960748..961326	+	192	150396112	-	Smed_0889	-	NADH dehydrogenase subunit B
885	 59.90	0	961345..961950	+	201	150396113	-	Smed_0890	-	NADH dehydrogenase subunit C
886	 62.13	0	962007..963197	+	396	150396114	-	Smed_0891	-	NADH dehydrogenase subunit D
887	 61.96	0	963197..963451	+	84	150396115	-	Smed_0892	-	putative signal peptide protein
888	 62.77	0	963468..964289	+	273	150396116	-	Smed_0893	-	NADH dehydrogenase subunit E
889	 62.61	0	964304..965608	+	434	150396117	-	Smed_0894	-	NADH dehydrogenase I subunit F
890	 66.82	+1	965614..966276	+	220	150396118	-	Smed_0895	-	putative NADH dehydrogenase I chain E
891	 63.64	0	966399..968480	+	693	150396119	-	Smed_0896	-	NADH dehydrogenase subunit G
892	 60.44	0	968501..969544	+	347	150396120	-	Smed_0897	-	NADH dehydrogenase subunit H
893	 60.77	0	969609..970100	+	163	150396121	-	Smed_0898	-	NADH dehydrogenase subunit I
894	 60.39	0	970197..970865	+	222	150396122	-	Smed_0899	-	NADH dehydrogenase subunit J
895	 55.99	-2	970895..971203	+	102	150396123	-	Smed_0900	-	NADH dehydrogenase subunit K
896	 60.45	0	971211..973205	+	664	150396124	-	Smed_0901	-	NADH dehydrogenase subunit L
897	 59.99	0	973205..974716	+	503	150396125	-	Smed_0902	-	NADH dehydrogenase subunit M
898	 61.19	0	974736..976178	+	480	150396126	-	Smed_0903	-	NADH dehydrogenase subunit N
899	 65.62	+1	976175..976942	+	255	150396127	-	Smed_0904	-	biotin--acetyl-CoA-carboxylase ligase
900	 62.35	0	976968..978635	+	555	150396128	-	Smed_0905	-	beta-lactamase domain-containing protein
901	 60.49	0	978692..979096	+	134	150396129	-	Smed_0906	-	methylmalonyl-CoA epimerase
902	 57.41	-1	979229..979498	+	89	150396130	-	Smed_0907	-	hypothetical protein
903	 62.34	0	980177..981469	+	430	150396131	-	Smed_0908	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
904	 58.48	-1	981466..981795	-	109	150396132	-	Smed_0909	-	Rieske (2Fe-2S) domain-containing protein
905	 64.33	0	981897..983138	-	413	150396133	-	Smed_0910	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
906	 55.16	-2	983298..984296	-	332	150396134	-	Smed_0911	-	sterol desaturase
907	 59.88	0	984289..984450	-	53	150396135	-	Smed_0912	-	hypothetical protein
908	 60.44	0	984447..985313	-	288	150396136	-	Smed_0913	-	xylose isomerase domain-containing protein
909	 60.53	0	985404..986414	-	336	150396137	-	Smed_0914	-	monosaccharide-transporting ATPase
910	 58.33	-1	986411..987166	-	251	150396138	-	Smed_0915	-	ABC transporter related
61.69	MEAN

2.82	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.