version 1.0
Sinorhizobium medicae WSM419, complete genome - 1..3781904 3529 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 33 63.59 0 35732..36121 + 129 150395261 - Smed_0033 - glyoxalase/bleomycin resistance protein/dioxygenase 34 61.97 0 36212..37276 + 354 150395262 - Smed_0034 - tryptophanyl-tRNA synthetase 35 61.99 0 37329..37820 + 163 150395263 - Smed_0035 - UspA domain-containing protein 36 59.96 0 38024..38590 + 188 150395264 - Smed_0036 - scaffold protein Nfu/NifU 37 65.14 +1 38810..39466 + 218 150395265 - Smed_0037 - peptidase M22 glycoprotease 38 63.89 0 39542..40045 + 167 150395266 - Smed_0038 - GCN5-related N-acetyltransferase 39 65.17 +1 40085..40954 + 289 150395267 - Smed_0039 - phospholipid/glycerol acyltransferase 40 62.86 0 41068..42486 + 472 150395268 - Smed_0040 - RNA modification protein 41 61.55 0 42491..43546 + 351 150395269 - Smed_0041 - PhoH family protein 42 57.99 -1 43610..44116 + 168 150395270 - Smed_0042 - hypothetical protein 43 64.29 0 44129..45304 + 391 150395271 - Smed_0043 - CBS domain-containing protein 44 60.91 0 45522..47153 + 543 150395272 lnt Smed_0044 - apolipoprotein N-acyltransferase 45 57.14 -1 47291..47710 + 139 150395273 - Smed_0045 - XRE family transcriptional regulator 46 60.89 0 48104..49384 + 426 150395274 - Smed_0046 - S-adenosylmethionine synthetase 47 62.52 0 49601..50299 + 232 150395275 trmB Smed_0047 - tRNA (guanine-N(7))-methyltransferase 48 58.14 -1 50450..50707 - 85 150395276 - Smed_0048 - hypothetical protein 49 59.26 0 50758..51189 - 143 150395277 - Smed_0049 - heat shock protein Hsp20 50 62.43 0 51351..52295 + 314 150395278 - Smed_0050 - inosine/uridine-preferring nucleoside hydrolase 51 62.99 0 52377..54767 - 796 150395279 - Smed_0051 - methyl-accepting chemotaxis sensory transducer 52 66.12 +1 55019..55939 - 306 150395280 - Smed_0052 - ribokinase-like domain-containing protein 53 61.92 0 56040..57239 - 399 150395281 - Smed_0053 - hypothetical protein 54 59.24 0 57379..57903 + 174 150395282 def Smed_0054 - peptide deformylase 55 66.45 +1 57979..58914 + 311 150395283 fmt Smed_0055 - methionyl-tRNA formyltransferase 56 64.11 0 58914..59657 + 247 150395284 truA Smed_0056 - tRNA pseudouridine synthase A 57 65.28 +1 59712..61664 - 650 150395285 - Smed_0057 - putative Chase2 sensor protein 58 62.64 0 61664..65260 - 1198 150395286 - Smed_0058 - TonB-dependent receptor 59 56.59 -1 65391..65936 + 181 150395287 - Smed_0059 - hypothetical protein 60 63.32 0 65990..66586 - 198 150395288 - Smed_0060 - hypothetical protein 61 63.31 0 66573..67853 - 426 150395289 - Smed_0061 - succinyl-diaminopimelate desuccinylase 62 63.53 0 67949..71134 - 1061 150395290 - Smed_0062 - hydrophobe/amphiphile efflux-1 (HAE1) family protein 63 66.58 +1 71262..72470 - 402 150395291 - Smed_0063 - RND family efflux transporter MFP subunit 64 64.45 0 72537..73349 - 270 150395292 - Smed_0064 - alpha/beta hydrolase domain-containing protein 65 61.61 0 73489..74397 + 302 150395293 - Smed_0065 - LysR family transcriptional regulator 66 66.03 +1 74407..74562 - 51 150395294 - Smed_0066 - hypothetical protein 67 65.12 +1 74665..76545 - 626 150395295 - Smed_0067 - DEAD/DEAH box helicase domain-containing protein 68 62.79 0 76698..77084 - 128 150395296 - Smed_0068 - hypothetical protein 69 64.57 +1 77087..77944 - 285 150395297 dapD Smed_0069 - 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase 70 62.33 0 78206..79105 + 299 150395298 - Smed_0070 - hypothetical protein 71 61.06 0 79106..79819 - 237 150395299 - Smed_0071 - pyrimidine 5'-nucleotidase 72 60.77 0 80028..80942 + 304 150395300 - Smed_0072 - hypothetical protein 73 63.97 0 81018..82130 + 370 150395301 - Smed_0073 - methylated-DNA--protein-cysteine methyltransferase 74 64.86 +1 82168..82944 + 258 150395302 - Smed_0074 - hypothetical protein 75 61.26 0 83044..83931 - 295 150395303 - Smed_0075 - acetylglutamate kinase 76 66.81 +1 84285..84995 + 236 150395304 - Smed_0076 - hypothetical protein 77 61.67 0 85094..85633 - 179 150395305 - Smed_0077 - hypothetical protein 78 62.54 0 85776..86429 - 217 150395306 - Smed_0078 - GTPase EngB 79 59.36 0 86577..88370 - 597 150395307 - Smed_0079 - putative inner membrane protein translocase component YidC 80 58.90 0 88367..88765 - 132 150395308 rnpA Smed_0080 - ribonuclease P 81 62.96 0 88787..88921 - 44 150395309 rpmH Smed_0081 - 50S ribosomal protein L34 82 61.41 0 89239..91236 + 665 150395310 - Smed_0082 - methyl-accepting chemotaxis sensory transducer 83 64.54 +1 91523..92323 + 266 150395311 - Smed_0083 - SNARE associated Golgi protein 84 64.35 0 92349..93770 + 473 150395312 - Smed_0084 - pyridine nucleotide-disulphide oxidoreductase dimerisation region 85 64.10 0 93792..95273 + 493 150395313 - Smed_0085 - integral membrane sensor signal transduction histidine kinase 86 62.56 0 95969..97768 + 599 150395314 - Smed_0086 - YadA domain-containing protein 87 62.15 0 97770..98345 + 191 150395315 - Smed_0087 - invasion associated locus B family protein 88 62.88 0 98359..99045 + 228 150395316 - Smed_0088 - putative signal peptide protein 89 62.42 0 99072..99542 - 156 150395317 - Smed_0089 - YbaK/prolyl-tRNA synthetase associated region 90 62.96 0 99866..100297 - 143 150395318 - Smed_0090 - hypothetical protein 91 65.47 +1 100484..101068 - 194 150395319 - Smed_0091 - hypothetical protein 92 65.26 +1 101142..104843 - 1233 150395320 - Smed_0092 - bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 93 63.86 0 105021..105341 - 106 150395321 - Smed_0093 - hypothetical protein 94 61.96 0 105400..106206 - 268 150395322 - Smed_0094 - metallophosphoesterase 95 64.72 +1 106316..106879 - 187 150395323 - Smed_0095 - Sel1 domain-containing protein 96 66.83 +1 107072..107686 + 204 150395324 - Smed_0096 - hypothetical protein 97 65.46 +1 107735..109642 - 635 150395325 - Smed_0097 - putative Chase2 sensor protein 98 62.70 0 109731..110435 - 234 150395326 - Smed_0098 - CRP/FNR family transcriptional regulator 99 61.42 0 110674..111111 + 145 150395327 - Smed_0099 - DoxX family protein 100 61.07 0 111196..111624 - 142 150395328 - Smed_0100 - RbsD or FucU transport 101 64.23 0 111629..112858 - 409 150395329 - Smed_0101 - ROK family protein 102 62.87 0 113078..114103 + 341 150395330 - Smed_0102 - periplasmic binding protein/LacI transcriptional regulator 103 59.93 0 114380..115462 + 360 150395331 - Smed_0103 - monosaccharide-transporting ATPase 104 64.50 0 115462..116244 + 260 150395332 - Smed_0104 - ABC transporter related 105 65.22 +1 116241..116861 + 206 150395333 frcK Smed_0105 - putative fructose transport system kinase 106 62.07 0 117052..118095 + 347 150395334 - Smed_0106 - dihydroorotase 107 62.23 0 118169..118867 + 232 150395335 pyrE Smed_0107 - orotate phosphoribosyltransferase 108 63.02 0 118915..119847 + 310 150395336 - Smed_0108 - ribokinase-like domain-containing protein 109 61.50 0 119959..121584 - 541 150395337 pgi Smed_0109 - glucose-6-phosphate isomerase 110 60.26 0 121776..123476 - 566 150395338 - Smed_0110 - acyl-CoA synthetase 111 63.95 0 123998..125173 + 391 150395339 - Smed_0111 - hypothetical protein 112 66.67 +1 125269..125934 + 221 150395340 - Smed_0112 - CDP-alcohol phosphatidyltransferase 113 63.89 0 125931..126542 + 203 150395341 - Smed_0113 - phospholipid/glycerol acyltransferase 114 62.31 0 126550..127491 + 313 150395342 - Smed_0114 - phosphatidate cytidylyltransferase 115 62.91 0 127699..128709 - 336 150395343 - Smed_0115 - 2-nitropropane dioxygenase NPD 116 65.98 +1 129033..130190 + 385 150395344 - Smed_0116 - hypothetical protein 117 60.58 0 130254..131156 - 300 150395345 - Smed_0117 - hypothetical protein 118 63.06 0 131391..132638 + 415 150395346 - Smed_0118 - PAS/PAC sensor signal transduction histidine kinase 119 59.32 0 132831..133865 + 344 150395347 - Smed_0119 - putative phosphate-binding periplasmic protein 120 61.75 0 133960..135444 + 494 150395348 - Smed_0120 - phosphate ABC transporter, inner membrane subunit PstC 121 60.70 0 135441..136763 + 440 150395349 - Smed_0121 - phosphate ABC transporter, inner membrane subunit PstA 122 58.33 -1 136777..137592 + 271 150395350 - Smed_0122 - phosphate ABC transporter, ATPase subunit 123 59.52 0 137681..138394 + 237 150395351 - Smed_0123 - phosphate uptake regulator, PhoU 124 64.91 +1 138486..139169 + 227 150395352 - Smed_0124 - two component transcriptional regulator 125 55.97 -2 139329..139805 - 158 150395353 - Smed_0125 - GCN5-related N-acetyltransferase 126 65.96 +1 139880..140443 - 187 150395354 - Smed_0126 - GcrA cell cycle regulator 127 63.42 0 140812..142011 + 399 150395355 argD Smed_0127 - bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 128 63.27 0 142052..142963 + 303 150395356 - Smed_0128 - ornithine carbamoyltransferase 129 62.94 0 143372..144364 + 330 150395357 hslO Smed_0129 - Hsp33-like chaperonin 130 59.80 0 144453..144845 - 130 150395358 apaG Smed_0130 - ApaG 131 59.57 0 145040..146011 - 323 150395359 - Smed_0131 - transposase IS116/IS110/IS902 family protein 132 61.33 0 146248..146865 + 205 150395360 - Smed_0132 - CDP-alcohol phosphatidyltransferase 61.69 MEAN 2.82 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.