IslandPathversion 1.0

IslandPath Analysis: Sinorhizobium medicae WSM419



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.69 STD DEV: 2.82
Sinorhizobium medicae WSM419, complete genome - 1..3781904
3529 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
33	 63.59	0	35732..36121	+	129	150395261	-	Smed_0033	-	glyoxalase/bleomycin resistance protein/dioxygenase
34	 61.97	0	36212..37276	+	354	150395262	-	Smed_0034	-	tryptophanyl-tRNA synthetase
35	 61.99	0	37329..37820	+	163	150395263	-	Smed_0035	-	UspA domain-containing protein
36	 59.96	0	38024..38590	+	188	150395264	-	Smed_0036	-	scaffold protein Nfu/NifU
37	 65.14	+1	38810..39466	+	218	150395265	-	Smed_0037	-	peptidase M22 glycoprotease
38	 63.89	0	39542..40045	+	167	150395266	-	Smed_0038	-	GCN5-related N-acetyltransferase
39	 65.17	+1	40085..40954	+	289	150395267	-	Smed_0039	-	phospholipid/glycerol acyltransferase
40	 62.86	0	41068..42486	+	472	150395268	-	Smed_0040	-	RNA modification protein
41	 61.55	0	42491..43546	+	351	150395269	-	Smed_0041	-	PhoH family protein
42	 57.99	-1	43610..44116	+	168	150395270	-	Smed_0042	-	hypothetical protein
43	 64.29	0	44129..45304	+	391	150395271	-	Smed_0043	-	CBS domain-containing protein
44	 60.91	0	45522..47153	+	543	150395272	lnt	Smed_0044	-	apolipoprotein N-acyltransferase
45	 57.14	-1	47291..47710	+	139	150395273	-	Smed_0045	-	XRE family transcriptional regulator
46	 60.89	0	48104..49384	+	426	150395274	-	Smed_0046	-	S-adenosylmethionine synthetase
47	 62.52	0	49601..50299	+	232	150395275	trmB	Smed_0047	-	tRNA (guanine-N(7))-methyltransferase
48	 58.14	-1	50450..50707	-	85	150395276	-	Smed_0048	-	hypothetical protein
49	 59.26	0	50758..51189	-	143	150395277	-	Smed_0049	-	heat shock protein Hsp20
50	 62.43	0	51351..52295	+	314	150395278	-	Smed_0050	-	inosine/uridine-preferring nucleoside hydrolase
51	 62.99	0	52377..54767	-	796	150395279	-	Smed_0051	-	methyl-accepting chemotaxis sensory transducer
52	 66.12	+1	55019..55939	-	306	150395280	-	Smed_0052	-	ribokinase-like domain-containing protein
53	 61.92	0	56040..57239	-	399	150395281	-	Smed_0053	-	hypothetical protein
54	 59.24	0	57379..57903	+	174	150395282	def	Smed_0054	-	peptide deformylase
55	 66.45	+1	57979..58914	+	311	150395283	fmt	Smed_0055	-	methionyl-tRNA formyltransferase
56	 64.11	0	58914..59657	+	247	150395284	truA	Smed_0056	-	tRNA pseudouridine synthase A
57	 65.28	+1	59712..61664	-	650	150395285	-	Smed_0057	-	putative Chase2 sensor protein
58	 62.64	0	61664..65260	-	1198	150395286	-	Smed_0058	-	TonB-dependent receptor
59	 56.59	-1	65391..65936	+	181	150395287	-	Smed_0059	-	hypothetical protein
60	 63.32	0	65990..66586	-	198	150395288	-	Smed_0060	-	hypothetical protein
61	 63.31	0	66573..67853	-	426	150395289	-	Smed_0061	-	succinyl-diaminopimelate desuccinylase
62	 63.53	0	67949..71134	-	1061	150395290	-	Smed_0062	-	hydrophobe/amphiphile efflux-1 (HAE1) family protein
63	 66.58	+1	71262..72470	-	402	150395291	-	Smed_0063	-	RND family efflux transporter MFP subunit
64	 64.45	0	72537..73349	-	270	150395292	-	Smed_0064	-	alpha/beta hydrolase domain-containing protein
65	 61.61	0	73489..74397	+	302	150395293	-	Smed_0065	-	LysR family transcriptional regulator
66	 66.03	+1	74407..74562	-	51	150395294	-	Smed_0066	-	hypothetical protein
67	 65.12	+1	74665..76545	-	626	150395295	-	Smed_0067	-	DEAD/DEAH box helicase domain-containing protein
68	 62.79	0	76698..77084	-	128	150395296	-	Smed_0068	-	hypothetical protein
69	 64.57	+1	77087..77944	-	285	150395297	dapD	Smed_0069	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
70	 62.33	0	78206..79105	+	299	150395298	-	Smed_0070	-	hypothetical protein
71	 61.06	0	79106..79819	-	237	150395299	-	Smed_0071	-	pyrimidine 5'-nucleotidase
72	 60.77	0	80028..80942	+	304	150395300	-	Smed_0072	-	hypothetical protein
73	 63.97	0	81018..82130	+	370	150395301	-	Smed_0073	-	methylated-DNA--protein-cysteine methyltransferase
74	 64.86	+1	82168..82944	+	258	150395302	-	Smed_0074	-	hypothetical protein
75	 61.26	0	83044..83931	-	295	150395303	-	Smed_0075	-	acetylglutamate kinase
76	 66.81	+1	84285..84995	+	236	150395304	-	Smed_0076	-	hypothetical protein
77	 61.67	0	85094..85633	-	179	150395305	-	Smed_0077	-	hypothetical protein
78	 62.54	0	85776..86429	-	217	150395306	-	Smed_0078	-	GTPase EngB
79	 59.36	0	86577..88370	-	597	150395307	-	Smed_0079	-	putative inner membrane protein translocase component YidC
80	 58.90	0	88367..88765	-	132	150395308	rnpA	Smed_0080	-	ribonuclease P
81	 62.96	0	88787..88921	-	44	150395309	rpmH	Smed_0081	-	50S ribosomal protein L34
82	 61.41	0	89239..91236	+	665	150395310	-	Smed_0082	-	methyl-accepting chemotaxis sensory transducer
83	 64.54	+1	91523..92323	+	266	150395311	-	Smed_0083	-	SNARE associated Golgi protein
84	 64.35	0	92349..93770	+	473	150395312	-	Smed_0084	-	pyridine nucleotide-disulphide oxidoreductase dimerisation region
85	 64.10	0	93792..95273	+	493	150395313	-	Smed_0085	-	integral membrane sensor signal transduction histidine kinase
86	 62.56	0	95969..97768	+	599	150395314	-	Smed_0086	-	YadA domain-containing protein
87	 62.15	0	97770..98345	+	191	150395315	-	Smed_0087	-	invasion associated locus B family protein
88	 62.88	0	98359..99045	+	228	150395316	-	Smed_0088	-	putative signal peptide protein
89	 62.42	0	99072..99542	-	156	150395317	-	Smed_0089	-	YbaK/prolyl-tRNA synthetase associated region
90	 62.96	0	99866..100297	-	143	150395318	-	Smed_0090	-	hypothetical protein
91	 65.47	+1	100484..101068	-	194	150395319	-	Smed_0091	-	hypothetical protein
92	 65.26	+1	101142..104843	-	1233	150395320	-	Smed_0092	-	bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
93	 63.86	0	105021..105341	-	106	150395321	-	Smed_0093	-	hypothetical protein
94	 61.96	0	105400..106206	-	268	150395322	-	Smed_0094	-	metallophosphoesterase
95	 64.72	+1	106316..106879	-	187	150395323	-	Smed_0095	-	Sel1 domain-containing protein
96	 66.83	+1	107072..107686	+	204	150395324	-	Smed_0096	-	hypothetical protein
97	 65.46	+1	107735..109642	-	635	150395325	-	Smed_0097	-	putative Chase2 sensor protein
98	 62.70	0	109731..110435	-	234	150395326	-	Smed_0098	-	CRP/FNR family transcriptional regulator
99	 61.42	0	110674..111111	+	145	150395327	-	Smed_0099	-	DoxX family protein
100	 61.07	0	111196..111624	-	142	150395328	-	Smed_0100	-	RbsD or FucU transport
101	 64.23	0	111629..112858	-	409	150395329	-	Smed_0101	-	ROK family protein
102	 62.87	0	113078..114103	+	341	150395330	-	Smed_0102	-	periplasmic binding protein/LacI transcriptional regulator
103	 59.93	0	114380..115462	+	360	150395331	-	Smed_0103	-	monosaccharide-transporting ATPase
104	 64.50	0	115462..116244	+	260	150395332	-	Smed_0104	-	ABC transporter related
105	 65.22	+1	116241..116861	+	206	150395333	frcK	Smed_0105	-	putative fructose transport system kinase
106	 62.07	0	117052..118095	+	347	150395334	-	Smed_0106	-	dihydroorotase
107	 62.23	0	118169..118867	+	232	150395335	pyrE	Smed_0107	-	orotate phosphoribosyltransferase
108	 63.02	0	118915..119847	+	310	150395336	-	Smed_0108	-	ribokinase-like domain-containing protein
109	 61.50	0	119959..121584	-	541	150395337	pgi	Smed_0109	-	glucose-6-phosphate isomerase
110	 60.26	0	121776..123476	-	566	150395338	-	Smed_0110	-	acyl-CoA synthetase
111	 63.95	0	123998..125173	+	391	150395339	-	Smed_0111	-	hypothetical protein
112	 66.67	+1	125269..125934	+	221	150395340	-	Smed_0112	-	CDP-alcohol phosphatidyltransferase
113	 63.89	0	125931..126542	+	203	150395341	-	Smed_0113	-	phospholipid/glycerol acyltransferase
114	 62.31	0	126550..127491	+	313	150395342	-	Smed_0114	-	phosphatidate cytidylyltransferase
115	 62.91	0	127699..128709	-	336	150395343	-	Smed_0115	-	2-nitropropane dioxygenase NPD
116	 65.98	+1	129033..130190	+	385	150395344	-	Smed_0116	-	hypothetical protein
117	 60.58	0	130254..131156	-	300	150395345	-	Smed_0117	-	hypothetical protein
118	 63.06	0	131391..132638	+	415	150395346	-	Smed_0118	-	PAS/PAC sensor signal transduction histidine kinase
119	 59.32	0	132831..133865	+	344	150395347	-	Smed_0119	-	putative phosphate-binding periplasmic protein
120	 61.75	0	133960..135444	+	494	150395348	-	Smed_0120	-	phosphate ABC transporter, inner membrane subunit PstC
121	 60.70	0	135441..136763	+	440	150395349	-	Smed_0121	-	phosphate ABC transporter, inner membrane subunit PstA
122	 58.33	-1	136777..137592	+	271	150395350	-	Smed_0122	-	phosphate ABC transporter, ATPase subunit
123	 59.52	0	137681..138394	+	237	150395351	-	Smed_0123	-	phosphate uptake regulator, PhoU
124	 64.91	+1	138486..139169	+	227	150395352	-	Smed_0124	-	two component transcriptional regulator
125	 55.97	-2	139329..139805	-	158	150395353	-	Smed_0125	-	GCN5-related N-acetyltransferase
126	 65.96	+1	139880..140443	-	187	150395354	-	Smed_0126	-	GcrA cell cycle regulator
127	 63.42	0	140812..142011	+	399	150395355	argD	Smed_0127	-	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein
128	 63.27	0	142052..142963	+	303	150395356	-	Smed_0128	-	ornithine carbamoyltransferase
129	 62.94	0	143372..144364	+	330	150395357	hslO	Smed_0129	-	Hsp33-like chaperonin
130	 59.80	0	144453..144845	-	130	150395358	apaG	Smed_0130	-	ApaG
131	 59.57	0	145040..146011	-	323	150395359	-	Smed_0131	-	transposase IS116/IS110/IS902 family protein
132	 61.33	0	146248..146865	+	205	150395360	-	Smed_0132	-	CDP-alcohol phosphatidyltransferase
61.69	MEAN

2.82	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.