IslandPathversion 1.0

IslandPath Analysis: Sinorhizobium medicae WSM419



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.69 STD DEV: 2.82
Sinorhizobium medicae WSM419, complete genome - 1..3781904
3529 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
670	 60.00	0	726647..727126	+	159	150395898	smpB	Smed_0674	-	SsrA-binding protein
671	 59.11	0	727344..727925	-	193	150395899	-	Smed_0675	-	hypothetical protein
672	 62.25	0	728394..728801	+	135	150395900	-	Smed_0676	-	DNA-directed RNA polymerase subunit omega
673	 60.65	0	728903..731128	+	741	150395901	-	Smed_0677	-	(p)ppGpp synthetase I, SpoT/RelA
674	 52.94	-2	731343..731495	+	50	150395902	-	Smed_0678	-	hypothetical protein
675	 61.77	0	731621..732253	+	210	150395903	-	Smed_0679	-	hypothetical protein
676	 62.38	0	732250..732669	+	139	150395904	acpS	Smed_0680	-	4'-phosphopantetheinyl transferase
677	 58.20	-1	732830..733573	+	247	150395905	-	Smed_0681	-	signal peptidase I
678	 60.95	0	733573..734289	+	238	150395906	-	Smed_0682	-	ribonuclease III
679	 61.63	0	734298..735230	+	310	150395907	era	Smed_0683	-	GTP-binding protein Era
680	 62.66	0	735437..736435	-	332	150395908	-	Smed_0684	-	glycerophosphoryl diester phosphodiesterase
681	 56.72	-1	736931..738187	+	418	150395909	-	Smed_0685	-	cyclopropane-fatty-acyl-phospholipid synthase
682	 64.46	0	738473..740779	+	768	150395910	-	Smed_0686	-	RNA-binding S1 domain-containing protein
683	 60.47	0	740947..741333	+	128	150395911	-	Smed_0687	-	putative signal peptide protein
684	 61.34	0	741511..742824	-	437	150395912	-	Smed_0688	-	UDP-glucose 6-dehydrogenase
685	 60.33	0	742955..743980	-	341	150395913	-	Smed_0689	-	NAD-dependent epimerase/dehydratase
686	 62.46	0	744051..744383	-	110	150395914	-	Smed_0690	-	regulatory protein ArsR
687	 60.46	0	744435..744917	+	160	150395915	-	Smed_0691	-	activator of Hsp90 ATPase 1 family protein
688	 59.50	0	744929..745291	+	120	150395916	-	Smed_0692	-	hypothetical protein
689	 64.13	0	745518..746267	+	249	150395917	recO	Smed_0693	-	DNA repair protein RecO
690	 61.98	0	746298..748301	-	667	150395918	-	Smed_0694	-	hypothetical protein
691	 65.66	+1	748540..751320	+	926	150395919	-	Smed_0695	-	hypothetical protein
692	 64.38	0	751317..751973	+	218	150395920	-	Smed_0696	-	metal dependent phosphohydrolase
693	 64.55	+1	752052..752903	+	283	150395921	-	Smed_0697	-	MOSC domain-containing protein
694	 62.79	0	753031..754269	+	412	150395922	-	Smed_0698	-	major facilitator transporter
695	 59.63	0	754451..755530	+	359	150395923	-	Smed_0699	-	quinolinate synthetase
696	 66.04	+1	755648..757246	+	532	150395924	-	Smed_0700	-	L-aspartate oxidase
697	 64.33	0	757296..758195	+	299	150395925	-	Smed_0701	-	nicotinate-nucleotide pyrophosphorylase
698	 62.24	0	758299..758817	+	172	150395926	-	Smed_0702	-	superoxide dismutase copper/zinc binding
699	 67.70	+2	758891..759859	-	322	150395927	-	Smed_0703	-	hypothetical protein
700	 64.80	+1	759849..760385	-	178	150395928	-	Smed_0704	-	hypothetical protein
701	 64.36	0	760388..760993	-	201	150395929	-	Smed_0705	-	hypothetical protein
702	 63.84	0	760993..761841	-	282	150395930	-	Smed_0706	-	glycine cleavage T protein (aminomethyl transferase)
703	 63.86	0	761951..762697	-	248	150395931	-	Smed_0707	-	hypothetical protein
704	 60.00	0	762713..762982	-	89	150395932	-	Smed_0708	-	hypothetical protein
705	 62.39	0	763140..763583	-	147	150395933	-	Smed_0709	-	putative signal peptide protein
706	 65.38	+1	763580..764044	-	154	150395934	-	Smed_0710	-	NUDIX hydrolase
707	 63.81	0	764103..764873	+	256	150395935	-	Smed_0711	-	hypothetical protein
708	 58.67	-1	764912..765061	-	49	150395936	-	Smed_0712	-	hypothetical protein
709	 62.03	0	765466..766866	+	466	150395937	cysS	Smed_0713	-	cysteinyl-tRNA synthetase
710	 63.77	0	766903..767385	+	160	150395938	-	Smed_0714	-	glutathione-dependent formaldehyde-activating GFA
711	 61.67	0	767382..767861	+	159	150395939	-	Smed_0715	-	glutathione-dependent formaldehyde-activating GFA
712	 61.88	0	767858..768358	+	166	150395940	-	Smed_0716	-	glutathione-dependent formaldehyde-activating GFA
713	 63.55	0	768355..769317	+	320	150395941	-	Smed_0717	-	proline iminopeptidase
714	 60.48	0	769374..770990	+	538	150395942	-	Smed_0718	-	alpha-isopropylmalate/homocitrate synthase family transferase
715	 59.87	0	771249..772190	+	313	150395943	-	Smed_0719	-	transporter DMT superfamily protein
716	 61.33	0	772222..772839	-	205	150395944	-	Smed_0720	-	hypothetical protein
717	 65.62	+1	773082..774800	+	572	150395945	-	Smed_0721	-	peptidoglycan-binding LysM
718	 60.67	0	775094..776977	+	627	150395946	-	Smed_0722	-	ABC transporter related
719	 62.80	0	777084..777782	+	232	150395947	-	Smed_0723	-	phosphatidylserine decarboxylase
720	 63.51	0	777792..778679	+	295	150395948	-	Smed_0724	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
721	 64.44	0	778954..780300	+	448	150395949	-	Smed_0725	-	transposase IS4 family protein
722	 62.42	0	780355..781107	-	250	150395950	-	Smed_0726	-	short-chain dehydrogenase/reductase SDR
723	 62.24	0	781107..782597	-	496	150395951	-	Smed_0727	-	amidophosphoribosyltransferase
724	 64.65	+1	782743..783387	-	214	150395952	-	Smed_0728	-	colicin V production protein
725	 64.46	0	783420..784823	-	467	150395953	-	Smed_0729	-	DNA repair protein RadA
726	 64.47	0	784944..786170	-	408	150395954	-	Smed_0730	-	alanine racemase
727	 61.19	0	786214..787071	+	285	150395955	-	Smed_0731	-	AraC family transcriptional regulator
728	 66.67	+1	787191..787844	+	217	150395956	-	Smed_0732	-	AzlC family protein
729	 67.99	+2	787841..788143	+	100	150395957	-	Smed_0733	-	branched-chain amino acid transport
730	 60.53	0	788168..789667	-	499	150395958	-	Smed_0734	-	replicative DNA helicase
731	 62.03	0	789989..790441	+	150	150395959	-	Smed_0735	-	MarR family transcriptional regulator
732	 61.14	0	790438..792048	+	536	150395960	-	Smed_0736	-	major facilitator transporter
733	 63.76	0	792065..793132	+	355	150395961	-	Smed_0737	-	secretion protein HlyD family protein
734	 60.76	0	793256..793831	-	191	150395962	rplI	Smed_0738	-	50S ribosomal protein L9
735	 62.58	0	793866..794819	-	317	150395963	-	Smed_0739	-	hypothetical protein
736	 62.65	0	795009..795257	-	82	150395964	rpsR	Smed_0740	-	30S ribosomal protein S18
737	 64.16	0	795283..795720	-	145	150395965	rpsF	Smed_0741	-	30S ribosomal protein S6
738	 61.86	0	796066..796398	+	110	150395966	-	Smed_0742	-	hypothetical protein
739	 62.64	0	796425..797468	-	347	150395967	-	Smed_0743	-	aldo/keto reductase
740	 64.02	0	797820..798764	+	314	150395968	-	Smed_0744	-	malonyl CoA-acyl carrier protein transacylase
741	 59.62	0	798789..799526	+	245	150395969	-	Smed_0745	-	3-ketoacyl-(acyl-carrier-protein) reductase NodG
742	 54.85	-2	799846..800082	+	78	150395970	acpP	Smed_0746	-	acyl carrier protein
743	 62.24	0	800391..801656	+	421	150395971	-	Smed_0747	-	3-oxoacyl-(acyl carrier protein) synthase II
744	 59.83	0	801944..803143	+	399	150395972	-	Smed_0748	-	aminodeoxychorismate lyase
745	 66.00	+1	803185..804825	-	546	150395973	-	Smed_0749	-	thiamine pyrophosphate binding domain-containing protein
746	 64.17	0	804827..805789	-	320	150395974	-	Smed_0750	-	cobalamin synthesis protein P47K
747	 64.58	+1	805783..807510	-	575	150395975	-	Smed_0751	-	amidohydrolase 3
748	 62.63	0	807545..809128	-	527	150395976	-	Smed_0752	-	hypothetical protein
749	 62.27	0	809248..810156	+	302	150395977	-	Smed_0753	-	LysR family transcriptional regulator
750	 62.18	0	810258..811349	+	363	150395978	-	Smed_0754	-	ABC transporter related
751	 60.13	0	811404..812519	+	371	150395979	-	Smed_0755	-	ABC transporter, binding protein
752	 62.23	0	812527..813360	+	277	150395980	-	Smed_0756	-	binding-protein-dependent transport systems inner membrane component
753	 58.90	0	813363..814160	+	265	150395981	-	Smed_0757	-	binding-protein-dependent transport systems inner membrane component
754	 62.95	0	814327..815214	+	295	150395982	-	Smed_0758	-	hypothetical protein
755	 61.21	0	815218..815877	+	219	150395983	gmk	Smed_0759	-	guanylate kinase
756	 64.73	+1	815897..816721	-	274	150395984	ksgA	Smed_0760	-	dimethyladenosine transferase
757	 66.67	+1	816721..817749	-	342	150395985	pdxA	Smed_0761	-	4-hydroxythreonine-4-phosphate dehydrogenase
758	 61.08	0	817759..818706	-	315	150395986	-	Smed_0762	-	SurA domain-containing protein
759	 60.70	0	818890..821235	-	781	150395987	-	Smed_0763	-	organic solvent tolerance protein
760	 57.34	-1	821235..822317	-	360	150395988	-	Smed_0764	-	permease YjgP/YjgQ family protein
761	 61.13	0	822314..823486	-	390	150395989	-	Smed_0765	-	permease YjgP/YjgQ family protein
762	 62.52	0	823801..825294	+	497	150395990	-	Smed_0766	-	leucyl aminopeptidase
763	 60.67	0	825314..825763	+	149	150395991	-	Smed_0767	-	DNA polymerase III subunit chi
764	 61.49	0	825863..826789	-	308	150395992	-	Smed_0768	-	galactose 1-dehydrogenase
765	 61.27	0	826902..827828	+	308	150395993	-	Smed_0769	-	GCN5-related N-acetyltransferase
766	 62.49	0	827883..829772	-	629	150395994	-	Smed_0770	-	ABC transporter related
767	 64.86	+1	830084..830359	+	91	150395995	-	Smed_0771	-	hypothetical protein
768	 60.40	0	830628..833291	+	887	150395996	-	Smed_0772	-	AMP-dependent synthetase and ligase
769	 61.79	0	833232..833744	-	170	150395997	-	Smed_0773	-	DinB family protein
61.69	MEAN

2.82	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.