version 1.0
Sinorhizobium medicae WSM419, complete genome - 1..3781904 3529 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 517 59.57 0 565448..565588 + 46 150395745 - Smed_0521 - hypothetical protein 518 59.80 0 565600..566196 + 198 150395746 - Smed_0522 - cytochrome C oxidase assembly protein 519 62.00 0 566258..567136 + 292 150395747 - Smed_0523 - cytochrome c oxidase subunit III 520 56.72 -1 567175..567717 + 180 150395748 - Smed_0524 - hypothetical protein 521 60.16 0 567734..568117 + 127 150395749 - Smed_0525 - hypothetical protein 522 62.90 0 568110..568853 + 247 150395750 - Smed_0526 - Surfeit locus 1 family protein 523 62.22 0 568944..569954 + 336 150395751 ispH Smed_0527 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 524 62.59 0 570058..571038 + 326 150395752 - Smed_0528 - homoserine kinase 525 60.82 0 571035..571496 + 153 150395753 rnhA Smed_0529 - ribonuclease H 526 60.70 0 571618..572103 - 161 150395754 - Smed_0530 - redoxin domain-containing protein 527 62.19 0 572155..573003 - 282 150395755 - Smed_0531 - hypothetical protein 528 61.72 0 573231..573836 + 201 150395756 - Smed_0532 - hypothetical protein 529 61.76 0 573936..576848 - 970 150395757 - Smed_0533 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 530 58.33 -1 576848..577459 - 203 150395758 - Smed_0534 - GCN5-related N-acetyltransferase 531 62.53 0 577734..579038 - 434 150395759 - Smed_0535 - processing peptidase 532 59.59 0 579053..580450 - 465 150395760 - Smed_0536 - threonine synthase 533 64.07 0 580800..581339 + 179 150395761 - Smed_0537 - hypothetical protein 534 63.69 0 581506..582612 - 368 150395762 - Smed_0538 - extracellular ligand-binding receptor 535 60.63 0 582755..583450 - 231 150395763 - Smed_0539 - HAD family hydrolase 536 64.04 0 583643..584326 - 227 150395764 - Smed_0540 - regulatory protein ArsR 537 60.74 0 584422..585618 + 398 150395765 - Smed_0541 - DNA methylase N-4/N-6 domain-containing protein 538 62.12 0 585754..586413 - 219 150395766 - Smed_0542 - HAD family hydrolase 539 66.58 +1 586475..587587 - 370 150395767 - Smed_0543 - A/G-specific adenine glycosylase 540 64.10 0 587706..588212 + 168 150395768 - Smed_0544 - hypothetical protein 541 61.36 0 588323..589132 + 269 150395769 - Smed_0545 - DSBA oxidoreductase 542 61.29 0 589212..589583 + 123 150395770 - Smed_0546 - hypothetical protein 543 66.09 +1 589852..593313 + 1153 150395771 - Smed_0547 - chromosome segregation protein SMC 544 63.00 0 593658..596354 + 898 150395772 - Smed_0548 - pyruvate phosphate dikinase 545 61.04 0 596423..596671 - 82 150395773 - Smed_0549 - hypothetical protein 546 61.79 0 596844..597233 - 129 150395774 - Smed_0550 - hypothetical protein 547 64.80 +1 597547..598455 + 302 150395775 - Smed_0551 - hypothetical protein 548 64.58 +1 598532..599440 - 302 150395776 - Smed_0552 - beta-lactamase domain-containing protein 549 62.21 0 599990..602614 + 874 150395777 - Smed_0553 - MscS mechanosensitive ion channel 550 64.49 0 602813..603226 - 137 150395778 - Smed_0554 - hypothetical protein 551 58.33 -1 603813..603956 + 47 150395779 - Smed_0555 - hypothetical protein 552 58.20 -1 603964..604152 - 62 150395780 - Smed_0556 - XRE family transcriptional regulator 553 64.86 +1 604396..605892 - 498 150395781 - Smed_0557 - sulfate adenylyltransferase, large subunit 554 62.05 0 605892..606845 - 317 150395782 - Smed_0558 - sulfate adenylyltransferase subunit 2 555 63.45 0 606893..607669 - 258 150395783 - Smed_0559 - adenylylsulfate reductase, thioredoxin dependent 556 62.02 0 607947..608333 + 128 150395784 - Smed_0560 - hypothetical protein 557 63.75 0 608333..608812 + 159 150395785 - Smed_0561 - hypothetical protein 558 63.52 0 608815..610464 - 549 150395786 - Smed_0562 - choline dehydrogenase 559 63.87 0 610662..612125 - 487 150395787 - Smed_0563 - betaine aldehyde dehydrogenase 560 62.18 0 612127..613665 - 512 150395788 - Smed_0564 - sulfatase 561 62.89 0 613739..614347 - 202 150395789 - Smed_0565 - transcriptional regulator BetI 562 63.02 0 614491..615039 + 182 150395790 - Smed_0566 - hypothetical protein 563 60.00 0 615148..616947 + 599 150395791 - Smed_0567 - diguanylate cyclase/phosphodiesterase 564 64.17 0 617028..618029 + 333 150395792 - Smed_0568 - quinone oxidoreductase putative PIG3 565 62.58 0 618299..619057 - 252 150395793 - Smed_0569 - hypothetical protein 566 64.59 +1 619108..620118 + 336 150395794 - Smed_0570 - L-asparaginase II 567 60.71 0 620204..620824 + 206 150395795 - Smed_0571 - glutathione S-transferase domain-containing protein 568 66.13 +1 621208..622143 + 311 150395796 - Smed_0572 - LysR family transcriptional regulator 569 62.12 0 622103..622762 - 219 150395797 - Smed_0573 - glutathione S-transferase domain-containing protein 570 61.92 0 622989..625307 + 772 150395798 - Smed_0574 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 571 62.72 0 625670..626353 + 227 150395799 - Smed_0575 - ErfK/YbiS/YcfS/YnhG family protein 572 61.64 0 626381..626857 - 158 150395800 - Smed_0576 - transcriptional regulator, TrmB 573 60.99 0 626965..627387 + 140 150395801 - Smed_0577 - OsmC family protein 574 62.19 0 627547..629109 - 520 150395802 - Smed_0578 - protein of unknown function DUF853 NPT hydrolase putative 575 64.12 0 629400..629792 + 130 150395803 - Smed_0579 - hypothetical protein 576 61.96 0 629884..630711 - 275 150395804 - Smed_0580 - aldo/keto reductase 577 61.76 0 630815..631588 - 257 150395805 - Smed_0581 - trans-aconitate 2-methyltransferase 578 59.28 0 631602..632264 - 220 150395806 - Smed_0582 - haloacid dehalogenase, type II 579 63.59 0 632549..633100 - 183 150395807 - Smed_0583 - hypothetical protein 580 64.65 +1 633195..634235 - 346 150395808 - Smed_0584 - alcohol dehydrogenase 581 63.27 0 634388..635269 + 293 150395809 - Smed_0585 - aminotransferase 582 63.02 0 635289..635699 - 136 150395810 - Smed_0586 - glyoxalase/bleomycin resistance protein/dioxygenase 583 56.22 -1 635936..636538 + 200 150395811 - Smed_0587 - superoxide dismutase 584 64.71 +1 636764..637477 - 237 150395812 - Smed_0588 - helix-turn-helix type 11 domain-containing protein 585 62.28 0 637606..638244 + 212 150395813 - Smed_0589 - lysine exporter protein LysE/YggA 586 60.40 0 638442..638888 + 148 150395814 - Smed_0590 - cytochrome c class II 587 63.60 0 639016..639960 + 314 150395815 - Smed_0591 - gluconate 2-dehydrogenase (acceptor) 588 65.28 +1 639980..640483 - 167 150395816 - Smed_0592 - GCN5-related N-acetyltransferase 589 61.84 0 640675..641088 - 137 150395817 - Smed_0593 - MerR family transcriptional regulator 590 63.64 0 641373..642263 + 296 150395818 - Smed_0594 - Beta-lactamase 591 62.72 0 642324..644654 - 776 150395819 - Smed_0595 - quinoprotein glucose dehydrogenase 592 62.36 0 644934..646487 - 517 150395820 - Smed_0596 - hypothetical protein 593 61.82 0 646566..647534 - 322 150395821 - Smed_0597 - homocysteine S-methyltransferase 594 63.65 0 647681..648211 - 176 150395822 - Smed_0598 - hypothetical protein 595 61.02 0 648224..650332 - 702 150395823 - Smed_0599 - oligopeptidase B 596 63.34 0 650504..651436 - 310 150395824 - Smed_0600 - LysR family transcriptional regulator 597 61.23 0 651566..651841 + 91 150395825 - Smed_0601 - hypothetical protein 598 63.08 0 651880..652770 - 296 150395826 - Smed_0602 - glyoxalase/bleomycin resistance protein/dioxygenase 599 57.17 -1 653060..653554 + 164 150395827 - Smed_0603 - UspA domain-containing protein 600 63.19 0 653610..653954 + 114 150395828 - Smed_0604 - TraR/DksA family transcriptional regulator 601 61.09 0 654254..654916 + 220 150395829 - Smed_0605 - Hly-III family protein 602 60.84 0 654993..655490 - 165 150395830 - Smed_0606 - hypothetical protein 603 62.42 0 655816..658191 + 791 150395831 - Smed_0607 - putative monovalent cation/H+ antiporter subunit A 604 61.67 0 658188..658607 + 139 150395832 - Smed_0608 - putative monovalent cation/H+ antiporter subunit B 605 60.85 0 658607..658984 + 125 150395833 - Smed_0609 - putative monovalent cation/H+ antiporter subunit C 606 62.12 0 658991..660553 + 520 150395834 - Smed_0610 - putative monovalent cation/H+ antiporter subunit D 607 59.33 0 660550..661026 + 158 150395835 - Smed_0611 - putative monovalent cation/H+ antiporter subunit E 608 66.67 +1 661023..661409 + 128 150395836 - Smed_0612 - putative monovalent cation/H+ antiporter subunit F 609 60.11 0 661409..661759 + 116 150395837 - Smed_0613 - putative monovalent cation/H+ antiporter subunit G 610 59.49 0 662165..662596 + 143 150395838 - Smed_0614 - MucR family transcriptional regulator 611 57.45 -1 662694..663116 - 140 150395839 - Smed_0615 - Fe-S metabolism associated SufE 612 61.43 0 663259..663678 - 139 150395840 - Smed_0616 - hypothetical protein 613 62.93 0 664192..665769 + 525 150395841 - Smed_0617 - histidine kinase 614 64.75 +1 665741..666679 + 312 150395842 - Smed_0618 - peptidoglycan binding domain-containing protein 615 62.64 0 666750..667097 + 115 150395843 - Smed_0619 - hypothetical protein 616 62.42 0 667251..668309 - 352 150395844 - Smed_0620 - hypothetical protein 61.69 MEAN 2.82 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0