version 1.0
Sinorhizobium medicae WSM419, complete genome - 1..3781904 3529 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 469 60.52 0 508946..511174 - 742 150395697 - Smed_0472 - diguanylate cyclase/phosphodiesterase 470 60.69 0 511313..512350 - 345 150395698 - Smed_0473 - extracellular solute-binding protein 471 62.49 0 512451..513647 - 398 150395699 - Smed_0474 - major facilitator transporter 472 62.38 0 513759..514574 + 271 150395700 - Smed_0475 - AraC family transcriptional regulator 473 61.09 0 514953..515759 + 268 150395701 - Smed_0476 - MltA-interacting MipA family protein 474 62.01 0 515828..516793 + 321 150395702 ubiA Smed_0477 - prenyltransferase 475 62.96 0 517158..517724 - 188 150395703 - Smed_0478 - hypothetical protein 476 57.88 -1 517934..520402 + 822 150395704 - Smed_0479 - hypothetical protein 477 64.02 0 520440..521873 - 477 150395705 - Smed_0480 - FAD linked oxidase domain-containing protein 478 66.05 +1 521921..522895 - 324 150395706 - Smed_0481 - Sua5/YciO/YrdC/YwlC family protein 479 61.64 0 522993..523589 - 198 150395707 - Smed_0482 - hypothetical protein 480 60.24 0 524224..525468 + 414 150395708 - Smed_0483 - Rieske (2Fe-2S) domain-containing protein 481 63.38 0 525471..526565 + 364 150395709 - Smed_0484 - ferredoxin 482 61.10 0 526567..527787 - 406 150395710 - Smed_0485 - glycoside hydrolase family protein 483 59.90 0 527886..528299 + 137 150395711 - Smed_0486 - BA14K family protein 484 64.20 0 528649..530430 + 593 150395712 - Smed_0487 - acyl-CoA dehydrogenase domain-containing protein 485 64.94 +1 530441..531193 + 250 150395713 - Smed_0488 - enoyl-CoA hydratase 486 62.95 0 531702..533798 + 698 150395714 - Smed_0489 - methyl-accepting chemotaxis sensory transducer 487 64.77 +1 533878..535140 - 420 150395715 - Smed_0490 - (Uracil-5)-methyltransferase 488 64.95 +1 535137..535892 - 251 150395716 - Smed_0491 - hemolysin A 489 63.38 0 536006..537919 - 637 150395717 - Smed_0492 - 1-deoxy-D-xylulose-5-phosphate synthase 490 62.34 0 538133..539056 - 307 150395718 - Smed_0493 - pirin domain-containing protein 491 61.90 0 539445..539696 - 83 150395719 - Smed_0495 - exodeoxyribonuclease VII small subunit 492 62.47 0 539700..540629 - 309 150395720 - Smed_0496 - histone deacetylase superfamily protein 493 65.84 +1 540693..541661 - 322 150395721 - Smed_0497 - alcohol dehydrogenase 494 62.19 0 541675..542076 + 133 150395722 - Smed_0498 - thioesterase superfamily protein 495 67.09 +1 542064..543257 - 397 150395723 - Smed_0499 - acetyl-CoA acetyltransferase 496 65.66 +1 543241..544737 - 498 150395724 - Smed_0500 - AMP-dependent synthetase and ligase 497 65.96 +1 544742..545305 - 187 150395725 - Smed_0501 - BioY protein 498 62.38 0 545337..545942 - 201 150395726 - Smed_0502 - cobalt transport protein 499 61.67 0 545936..546616 - 226 150395727 - Smed_0503 - ABC transporter related 500 61.75 0 546739..547938 + 399 150395728 - Smed_0504 - hypothetical protein 501 64.41 0 548041..549456 + 471 150395729 - Smed_0505 - peptidase U62 modulator of DNA gyrase 502 66.50 +1 549494..550711 - 405 150395730 - Smed_0506 - Serine-type D-Ala-D-Ala carboxypeptidase 503 64.49 0 550909..551967 + 352 150395731 - Smed_0507 - polysaccharide deacetylase 504 62.79 0 552143..553456 + 437 150395732 - Smed_0508 - hypothetical protein 505 60.23 0 553495..554115 - 206 150395733 - Smed_0509 - pyridoxamine 5'-phosphate oxidase 506 61.15 0 554223..554711 + 162 150395734 - Smed_0510 - hypothetical protein 507 62.61 0 554913..555971 + 352 150395735 - Smed_0511 - heat shock protein DnaJ domain-containing protein 508 59.58 0 556171..556989 + 272 150395736 - Smed_0512 - enoyl-(acyl carrier protein) reductase 509 62.05 0 557206..557790 + 194 150395737 - Smed_0513 - phosphoglycerate mutase 510 54.13 -2 557852..558154 - 100 150395738 - Smed_0514 - hypothetical protein 511 62.93 0 558536..559633 + 365 150395739 - Smed_0515 - chorismate synthase 512 61.85 0 559679..560779 + 366 150395740 - Smed_0516 - 3,4-dihydroxy-2-butanone 4-phosphate synthase 513 64.60 +1 560845..561375 - 176 150395741 - Smed_0517 - invasion associated locus B family protein 514 58.87 0 561807..562691 + 294 150395742 - Smed_0518 - cytochrome c oxidase subunit II 515 60.27 0 562711..564399 + 562 150395743 - Smed_0519 - cytochrome c oxidase subunit I type 516 60.67 0 564498..565448 + 316 150395744 - Smed_0520 - protoheme IX farnesyltransferase 517 59.57 0 565448..565588 + 46 150395745 - Smed_0521 - hypothetical protein 518 59.80 0 565600..566196 + 198 150395746 - Smed_0522 - cytochrome C oxidase assembly protein 519 62.00 0 566258..567136 + 292 150395747 - Smed_0523 - cytochrome c oxidase subunit III 520 56.72 -1 567175..567717 + 180 150395748 - Smed_0524 - hypothetical protein 521 60.16 0 567734..568117 + 127 150395749 - Smed_0525 - hypothetical protein 522 62.90 0 568110..568853 + 247 150395750 - Smed_0526 - Surfeit locus 1 family protein 523 62.22 0 568944..569954 + 336 150395751 ispH Smed_0527 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 524 62.59 0 570058..571038 + 326 150395752 - Smed_0528 - homoserine kinase 525 60.82 0 571035..571496 + 153 150395753 rnhA Smed_0529 - ribonuclease H 526 60.70 0 571618..572103 - 161 150395754 - Smed_0530 - redoxin domain-containing protein 527 62.19 0 572155..573003 - 282 150395755 - Smed_0531 - hypothetical protein 528 61.72 0 573231..573836 + 201 150395756 - Smed_0532 - hypothetical protein 529 61.76 0 573936..576848 - 970 150395757 - Smed_0533 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 530 58.33 -1 576848..577459 - 203 150395758 - Smed_0534 - GCN5-related N-acetyltransferase 531 62.53 0 577734..579038 - 434 150395759 - Smed_0535 - processing peptidase 532 59.59 0 579053..580450 - 465 150395760 - Smed_0536 - threonine synthase 533 64.07 0 580800..581339 + 179 150395761 - Smed_0537 - hypothetical protein 534 63.69 0 581506..582612 - 368 150395762 - Smed_0538 - extracellular ligand-binding receptor 535 60.63 0 582755..583450 - 231 150395763 - Smed_0539 - HAD family hydrolase 536 64.04 0 583643..584326 - 227 150395764 - Smed_0540 - regulatory protein ArsR 537 60.74 0 584422..585618 + 398 150395765 - Smed_0541 - DNA methylase N-4/N-6 domain-containing protein 538 62.12 0 585754..586413 - 219 150395766 - Smed_0542 - HAD family hydrolase 539 66.58 +1 586475..587587 - 370 150395767 - Smed_0543 - A/G-specific adenine glycosylase 540 64.10 0 587706..588212 + 168 150395768 - Smed_0544 - hypothetical protein 541 61.36 0 588323..589132 + 269 150395769 - Smed_0545 - DSBA oxidoreductase 542 61.29 0 589212..589583 + 123 150395770 - Smed_0546 - hypothetical protein 543 66.09 +1 589852..593313 + 1153 150395771 - Smed_0547 - chromosome segregation protein SMC 544 63.00 0 593658..596354 + 898 150395772 - Smed_0548 - pyruvate phosphate dikinase 545 61.04 0 596423..596671 - 82 150395773 - Smed_0549 - hypothetical protein 546 61.79 0 596844..597233 - 129 150395774 - Smed_0550 - hypothetical protein 547 64.80 +1 597547..598455 + 302 150395775 - Smed_0551 - hypothetical protein 548 64.58 +1 598532..599440 - 302 150395776 - Smed_0552 - beta-lactamase domain-containing protein 549 62.21 0 599990..602614 + 874 150395777 - Smed_0553 - MscS mechanosensitive ion channel 550 64.49 0 602813..603226 - 137 150395778 - Smed_0554 - hypothetical protein 551 58.33 -1 603813..603956 + 47 150395779 - Smed_0555 - hypothetical protein 552 58.20 -1 603964..604152 - 62 150395780 - Smed_0556 - XRE family transcriptional regulator 553 64.86 +1 604396..605892 - 498 150395781 - Smed_0557 - sulfate adenylyltransferase, large subunit 554 62.05 0 605892..606845 - 317 150395782 - Smed_0558 - sulfate adenylyltransferase subunit 2 555 63.45 0 606893..607669 - 258 150395783 - Smed_0559 - adenylylsulfate reductase, thioredoxin dependent 556 62.02 0 607947..608333 + 128 150395784 - Smed_0560 - hypothetical protein 557 63.75 0 608333..608812 + 159 150395785 - Smed_0561 - hypothetical protein 558 63.52 0 608815..610464 - 549 150395786 - Smed_0562 - choline dehydrogenase 559 63.87 0 610662..612125 - 487 150395787 - Smed_0563 - betaine aldehyde dehydrogenase 560 62.18 0 612127..613665 - 512 150395788 - Smed_0564 - sulfatase 561 62.89 0 613739..614347 - 202 150395789 - Smed_0565 - transcriptional regulator BetI 562 63.02 0 614491..615039 + 182 150395790 - Smed_0566 - hypothetical protein 563 60.00 0 615148..616947 + 599 150395791 - Smed_0567 - diguanylate cyclase/phosphodiesterase 564 64.17 0 617028..618029 + 333 150395792 - Smed_0568 - quinone oxidoreductase putative PIG3 565 62.58 0 618299..619057 - 252 150395793 - Smed_0569 - hypothetical protein 566 64.59 +1 619108..620118 + 336 150395794 - Smed_0570 - L-asparaginase II 567 60.71 0 620204..620824 + 206 150395795 - Smed_0571 - glutathione S-transferase domain-containing protein 568 66.13 +1 621208..622143 + 311 150395796 - Smed_0572 - LysR family transcriptional regulator 61.69 MEAN 2.82 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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