version 1.0
Sinorhizobium medicae WSM419, complete genome - 1..3781904 3529 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 328 62.39 0 360668..361672 + 334 150395556 - Smed_0330 - nickel-transporting ATPase 329 63.48 0 361683..362591 + 302 150395557 - Smed_0331 - binding-protein-dependent transport systems inner membrane component 330 61.05 0 362593..363447 + 284 150395558 - Smed_0332 - ABC transporter related 331 61.47 0 363444..364271 + 275 150395559 - Smed_0333 - ABC transporter related 332 62.32 0 364338..364682 + 114 150395560 - Smed_0334 - endoribonuclease L-PSP 333 59.65 0 364834..365004 + 56 150395561 - Smed_0335 - hypothetical protein 334 61.98 0 365106..366236 + 376 150395562 - Smed_0336 - hypothetical protein 335 59.52 0 366319..367116 - 265 150395563 - Smed_0337 - two-component response regulator 336 62.05 0 367354..367548 + 64 150395564 - Smed_0338 - hypothetical protein 337 63.45 0 367744..367992 - 82 150395565 - Smed_0339 - 17 kDa surface antigen 338 49.23 -2 368390..368584 + 64 150395566 - Smed_0340 - hypothetical protein 339 57.58 -1 368700..368864 + 54 150395567 - Smed_0341 - hypothetical protein 340 64.11 0 369055..370308 + 417 150395568 - Smed_0342 - FAD dependent oxidoreductase 341 62.71 0 370334..371293 - 319 150395569 - Smed_0343 - periplasmic binding protein/LacI transcriptional regulator 342 61.78 0 371323..372366 - 347 150395570 - Smed_0344 - monosaccharide-transporting ATPase 343 62.50 0 372363..373178 - 271 150395571 - Smed_0345 - ABC transporter related 344 64.51 0 373223..374566 - 447 150395572 - Smed_0346 - acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase 345 63.45 0 375017..375265 + 82 150395573 - Smed_0347 - hypothetical protein 346 61.65 0 375292..375849 - 185 150395574 - Smed_0348 - MgtC/SapB transporter 347 68.69 +2 375961..376404 - 147 150395575 - Smed_0349 - hypothetical protein 348 61.52 0 376714..377373 + 219 150395576 - Smed_0350 - hypothetical protein 349 62.36 0 377410..377850 + 146 150395577 - Smed_0351 - hypothetical protein 350 64.58 +1 377865..378104 - 79 150395578 - Smed_0352 - putative transmembrane protein 351 62.50 0 378111..378878 - 255 150395579 - Smed_0353 - protein of unknown function DUF899 thioredoxin family protein 352 69.24 +2 379000..380241 + 413 150395580 - Smed_0354 - hypothetical protein 353 62.64 0 380277..380921 + 214 150395581 - Smed_0355 - hypothetical protein 354 60.98 0 381192..381560 + 122 150395582 - Smed_0356 - hypothetical protein 355 58.23 -1 381902..382363 - 153 150395583 - Smed_0357 - hypothetical protein 356 58.11 -1 382662..383105 + 147 150395584 - Smed_0358 - S-isoprenylcysteine methyltransferase-like protein 357 59.28 0 383109..383690 + 193 150395585 - Smed_0359 - TetR family transcriptional regulator 358 60.49 0 384863..385834 + 323 150395586 - Smed_0361 - hypothetical protein 359 58.23 -1 385890..386363 + 157 150395587 - Smed_0362 - putative tricarboxylic transport membrane protein 360 60.20 0 386374..387873 + 499 150395588 - Smed_0363 - hypothetical protein 361 56.78 -1 388023..388841 + 272 150395589 - Smed_0364 - GntR domain-containing protein 362 60.25 0 388975..391593 + 872 150395590 acnA Smed_0365 - aconitate hydratase 363 59.09 0 391945..392841 - 298 150395591 - Smed_0366 - LysR family transcriptional regulator 364 56.39 -1 392937..393257 + 106 150395592 - Smed_0367 - hypothetical protein 365 60.38 0 393257..394036 + 259 150395593 - Smed_0368 - short chain dehydrogenase 366 58.12 -1 394056..394523 - 155 150395594 - Smed_0369 - MarR family transcriptional regulator 367 57.98 -1 394667..395449 + 260 150395595 - Smed_0370 - hypothetical protein 368 58.81 -1 395655..397283 + 542 150395596 - Smed_0371 - glucose-methanol-choline oxidoreductase 369 67.78 +2 398129..399658 + 509 150395597 - Smed_0372 - Ppx/GppA phosphatase 370 63.55 0 399655..400392 + 245 150395598 - Smed_0373 - ribosomal RNA methyltransferase RrmJ/FtsJ 371 66.15 +1 400396..400779 + 127 150395599 - Smed_0374 - glyoxalase/bleomycin resistance protein/dioxygenase 372 60.02 0 401023..401955 - 310 150395600 - Smed_0375 - transposase IS116/IS110/IS902 family protein 373 63.64 0 402469..403326 + 285 150395601 - Smed_0376 - transposase IS116/IS110/IS902 family protein 374 64.26 0 403375..404787 - 470 150395602 - Smed_0377 - EmrB/QacA family drug resistance transporter 375 60.65 0 405136..406116 + 326 150395603 - Smed_0378 - beta-lactamase domain-containing protein 376 65.54 +1 406307..407809 + 500 150395604 - Smed_0379 - inositol-5-monophosphate dehydrogenase 377 61.15 0 407887..408303 + 138 150395605 - Smed_0380 - hypothetical protein 378 61.53 0 408389..409264 + 291 150395606 - Smed_0381 - carboxymethylenebutenolidase 379 62.26 0 409265..410218 - 317 150395607 - Smed_0382 - LysR family transcriptional regulator 380 61.01 0 410335..411819 + 494 150395608 - Smed_0383 - catalase 381 63.09 0 411903..412853 - 316 150395609 - Smed_0384 - LysR family transcriptional regulator 382 61.62 0 413060..413356 + 98 150395610 - Smed_0385 - hypothetical protein 383 60.76 0 413660..414505 - 281 150395611 - Smed_0386 - hypothetical protein 384 61.57 0 414615..415988 - 457 150395612 - Smed_0387 - glutamate--cysteine ligase 385 63.14 0 416148..416885 - 245 150395613 - Smed_0388 - hypothetical protein 386 63.55 0 416904..418409 - 501 150395614 - Smed_0389 - phosphate transporter 387 61.34 0 418612..419118 - 168 150395615 - Smed_0390 - NUDIX hydrolase 388 65.73 +1 419392..420249 - 285 150395616 - Smed_0391 - GntR domain-containing protein 389 65.25 +1 420394..421662 + 422 150395617 - Smed_0392 - hypothetical protein 390 62.76 0 421682..422578 - 298 150395618 - Smed_0393 - LysR family transcriptional regulator 391 60.83 0 422685..424124 + 479 150395619 - Smed_0394 - D-lactate dehydrogenase (cytochrome) 392 66.75 +1 424121..425338 + 405 150395620 - Smed_0395 - FAD linked oxidase domain-containing protein 393 64.11 0 425463..426755 + 430 150395621 - Smed_0396 - hypothetical protein 394 62.74 0 426880..427566 - 228 150395622 - Smed_0397 - ErfK/YbiS/YcfS/YnhG family protein 395 62.35 0 427756..428496 - 246 150395623 - Smed_0398 - ErfK/YbiS/YcfS/YnhG family protein 396 60.85 0 428776..429411 + 211 150395624 - Smed_0399 - DNA-3-methyladenine glycosylase I 397 60.33 0 429481..430932 - 483 150395625 - Smed_0400 - permease for cytosine/purines uracil thiamine allantoin 398 58.53 -1 431188..431568 - 126 150395626 - Smed_0401 - hypothetical protein 399 61.50 0 432104..432529 - 141 150395627 - Smed_0402 - hypothetical protein 400 62.34 0 432749..434272 + 507 150395628 hisS Smed_0403 - histidyl-tRNA synthetase 401 65.78 +1 434278..435411 + 377 150395629 hisZ Smed_0404 - ATP phosphoribosyltransferase regulatory subunit 402 62.64 0 435408..436103 + 231 150395630 hisG Smed_0405 - ATP phosphoribosyltransferase catalytic subunit 403 59.18 0 436224..436931 + 235 150395631 - Smed_0406 - glutathione S-transferase domain-containing protein 404 63.62 0 436959..438239 + 426 150395632 - Smed_0407 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase 405 61.11 0 438560..440197 - 545 150395633 groEL Smed_0408 - chaperonin GroEL 406 59.60 0 440275..440571 - 98 150395634 groES Smed_0409 - co-chaperonin GroES 407 61.60 0 440876..441724 + 282 150395635 - Smed_0410 - HAD family hydrolase 408 63.31 0 441738..442721 + 327 150395636 - Smed_0411 - bifunctional riboflavin kinase/FMN adenylyltransferase 409 61.65 0 443003..445912 + 969 150395637 ileS Smed_0412 - isoleucyl-tRNA synthetase 410 64.73 +1 446046..446666 + 206 150395638 - Smed_0413 - hypothetical protein 411 62.92 0 446739..447218 + 159 150395639 - Smed_0414 - GCN5-related N-acetyltransferase 412 64.67 +1 447715..448164 - 149 150395640 - Smed_0415 - CMP/dCMP deaminase zinc-binding 413 67.36 +2 448238..449968 + 576 150395641 - Smed_0416 - pseudouridine synthase 414 65.95 +1 449975..450535 + 186 150395642 - Smed_0417 - putative methyltransferase 415 62.94 0 450625..451509 + 294 150395643 - Smed_0418 - patatin 416 58.85 -1 451719..452396 - 225 150395644 - Smed_0419 - porin 417 62.75 0 452990..454855 - 621 150395645 - Smed_0420 - potassium efflux system protein 418 64.81 +1 454976..456322 + 448 150395646 - Smed_0421 - peptidase U62 modulator of DNA gyrase 419 64.22 0 456479..457297 + 272 150395647 - Smed_0422 - inositol monophosphatase 420 56.96 -1 457358..457594 + 78 150395648 - Smed_0423 - hypothetical protein 421 63.11 0 457632..458951 + 439 150395649 - Smed_0424 - 3-deoxy-D-manno-octulosonic-acid transferase 422 61.40 0 458976..459677 + 233 150395650 - Smed_0425 - HAD family hydrolase 423 64.55 +1 459818..460858 + 346 150395651 lpxK Smed_0426 - tetraacyldisaccharide 4'-kinase 424 63.68 0 460962..461195 - 77 150395652 - Smed_0427 - hypothetical protein 425 66.23 +1 461286..463103 - 605 150395653 mutL Smed_0428 - DNA mismatch repair protein 426 62.87 0 463541..465280 + 579 150395654 - Smed_0429 - putative PAS/PAC sensor protein 427 62.00 0 465277..466626 + 449 150395655 - Smed_0430 - diguanylate cyclase/phosphodiesterase 61.69 MEAN 2.82 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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