version 1.0
Sinorhizobium medicae WSM419, complete genome - 1..3781904 3529 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 293 61.77 0 312923..314065 + 380 150395521 - Smed_0294 - binding-protein-dependent transport systems inner membrane component 294 60.39 0 314094..315749 + 551 150395522 - Smed_0295 - alpha amylase catalytic region 295 62.53 0 315769..316857 + 362 150395523 - Smed_0296 - ABC transporter related 296 58.74 -1 316945..317373 + 142 150395524 - Smed_0297 - hypothetical protein 297 64.31 0 317540..319360 - 606 150395525 - Smed_0298 - phosphogluconate dehydratase 298 64.22 0 319461..320156 - 231 150395526 - Smed_0299 - 6-phosphogluconolactonase 299 61.04 0 320165..321640 - 491 150395527 - Smed_0300 - glucose-6-phosphate 1-dehydrogenase 300 63.16 0 321846..323156 - 436 150395528 - Smed_0301 - FAD dependent oxidoreductase 301 60.19 0 323149..324585 - 478 150395529 - Smed_0302 - glutamate--putrescine ligase 302 63.71 0 324710..325894 + 394 150395530 - Smed_0303 - hypothetical protein 303 59.57 0 326166..326306 + 46 150395531 - Smed_0304 - hypothetical protein 304 62.07 0 326610..329135 + 841 150395532 - Smed_0305 - methyl-accepting chemotaxis sensory transducer 305 65.98 +1 329484..330359 + 291 150395533 - Smed_0306 - LysR family transcriptional regulator 306 62.50 0 330550..330789 - 79 150395534 - Smed_0307 - hypothetical protein 307 61.16 0 330900..332189 - 429 150395535 - Smed_0308 - isocitrate lyase 308 65.32 +1 332417..333829 + 470 150395536 - Smed_0309 - hypothetical protein 309 56.89 -1 334002..335096 + 364 150395537 - Smed_0310 - extracellular solute-binding protein 310 59.58 0 335252..336394 + 380 150395538 - Smed_0311 - spermidine/putrescine ABC transporter ATPase subunit 311 58.33 -1 336399..337310 + 303 150395539 - Smed_0312 - binding-protein-dependent transport systems inner membrane component 312 62.29 0 337314..338135 + 273 150395540 - Smed_0313 - ornithine carbamoyltransferase 313 65.30 +1 338140..339966 - 608 150395541 - Smed_0314 - AsmA family protein 314 62.52 0 340138..342090 + 650 150395542 - Smed_0315 - acetoacetyl-CoA synthetase 315 63.98 0 342410..344122 - 570 150395543 - Smed_0317 - binding-protein-dependent transport systems inner membrane component 316 64.68 +1 344380..347796 - 1138 150395544 - Smed_0318 - PAS/PAC sensor signal transduction histidine kinase 317 60.85 0 348029..348475 + 148 150395545 - Smed_0319 - phasin 318 57.73 -1 348806..349633 - 275 150395546 - Smed_0320 - response regulator receiver protein 319 63.54 0 349836..350603 + 255 150395547 - Smed_0321 - short-chain dehydrogenase/reductase SDR 320 59.81 0 350614..351852 + 412 150395548 - Smed_0322 - FAD-linked oxidoreductase 321 63.38 0 351889..352770 - 293 150395549 - Smed_0323 - LysR family transcriptional regulator 322 62.86 0 352885..354381 + 498 150395550 - Smed_0324 - methylmalonate-semialdehyde dehydrogenase 323 62.02 0 354591..355709 + 372 150395551 - Smed_0325 - hypothetical protein 324 65.16 +1 355699..356760 + 353 150395552 - Smed_0326 - peptidase M48 Ste24p 325 60.04 0 356839..357879 - 346 150395553 - Smed_0327 - extracellular solute-binding protein 326 62.37 0 358069..358533 + 154 150395554 rirA Smed_0328 - iron-responsive transcriptional regulator 327 60.09 0 358968..360563 + 531 150395555 - Smed_0329 - extracellular solute-binding protein 328 62.39 0 360668..361672 + 334 150395556 - Smed_0330 - nickel-transporting ATPase 329 63.48 0 361683..362591 + 302 150395557 - Smed_0331 - binding-protein-dependent transport systems inner membrane component 330 61.05 0 362593..363447 + 284 150395558 - Smed_0332 - ABC transporter related 331 61.47 0 363444..364271 + 275 150395559 - Smed_0333 - ABC transporter related 332 62.32 0 364338..364682 + 114 150395560 - Smed_0334 - endoribonuclease L-PSP 333 59.65 0 364834..365004 + 56 150395561 - Smed_0335 - hypothetical protein 334 61.98 0 365106..366236 + 376 150395562 - Smed_0336 - hypothetical protein 335 59.52 0 366319..367116 - 265 150395563 - Smed_0337 - two-component response regulator 336 62.05 0 367354..367548 + 64 150395564 - Smed_0338 - hypothetical protein 337 63.45 0 367744..367992 - 82 150395565 - Smed_0339 - 17 kDa surface antigen 338 49.23 -2 368390..368584 + 64 150395566 - Smed_0340 - hypothetical protein 339 57.58 -1 368700..368864 + 54 150395567 - Smed_0341 - hypothetical protein 340 64.11 0 369055..370308 + 417 150395568 - Smed_0342 - FAD dependent oxidoreductase 341 62.71 0 370334..371293 - 319 150395569 - Smed_0343 - periplasmic binding protein/LacI transcriptional regulator 342 61.78 0 371323..372366 - 347 150395570 - Smed_0344 - monosaccharide-transporting ATPase 343 62.50 0 372363..373178 - 271 150395571 - Smed_0345 - ABC transporter related 344 64.51 0 373223..374566 - 447 150395572 - Smed_0346 - acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase 345 63.45 0 375017..375265 + 82 150395573 - Smed_0347 - hypothetical protein 346 61.65 0 375292..375849 - 185 150395574 - Smed_0348 - MgtC/SapB transporter 347 68.69 +2 375961..376404 - 147 150395575 - Smed_0349 - hypothetical protein 348 61.52 0 376714..377373 + 219 150395576 - Smed_0350 - hypothetical protein 349 62.36 0 377410..377850 + 146 150395577 - Smed_0351 - hypothetical protein 350 64.58 +1 377865..378104 - 79 150395578 - Smed_0352 - putative transmembrane protein 351 62.50 0 378111..378878 - 255 150395579 - Smed_0353 - protein of unknown function DUF899 thioredoxin family protein 352 69.24 +2 379000..380241 + 413 150395580 - Smed_0354 - hypothetical protein 353 62.64 0 380277..380921 + 214 150395581 - Smed_0355 - hypothetical protein 354 60.98 0 381192..381560 + 122 150395582 - Smed_0356 - hypothetical protein 355 58.23 -1 381902..382363 - 153 150395583 - Smed_0357 - hypothetical protein 356 58.11 -1 382662..383105 + 147 150395584 - Smed_0358 - S-isoprenylcysteine methyltransferase-like protein 357 59.28 0 383109..383690 + 193 150395585 - Smed_0359 - TetR family transcriptional regulator 358 60.49 0 384863..385834 + 323 150395586 - Smed_0361 - hypothetical protein 359 58.23 -1 385890..386363 + 157 150395587 - Smed_0362 - putative tricarboxylic transport membrane protein 360 60.20 0 386374..387873 + 499 150395588 - Smed_0363 - hypothetical protein 361 56.78 -1 388023..388841 + 272 150395589 - Smed_0364 - GntR domain-containing protein 362 60.25 0 388975..391593 + 872 150395590 acnA Smed_0365 - aconitate hydratase 363 59.09 0 391945..392841 - 298 150395591 - Smed_0366 - LysR family transcriptional regulator 364 56.39 -1 392937..393257 + 106 150395592 - Smed_0367 - hypothetical protein 365 60.38 0 393257..394036 + 259 150395593 - Smed_0368 - short chain dehydrogenase 366 58.12 -1 394056..394523 - 155 150395594 - Smed_0369 - MarR family transcriptional regulator 367 57.98 -1 394667..395449 + 260 150395595 - Smed_0370 - hypothetical protein 368 58.81 -1 395655..397283 + 542 150395596 - Smed_0371 - glucose-methanol-choline oxidoreductase 369 67.78 +2 398129..399658 + 509 150395597 - Smed_0372 - Ppx/GppA phosphatase 370 63.55 0 399655..400392 + 245 150395598 - Smed_0373 - ribosomal RNA methyltransferase RrmJ/FtsJ 371 66.15 +1 400396..400779 + 127 150395599 - Smed_0374 - glyoxalase/bleomycin resistance protein/dioxygenase 372 60.02 0 401023..401955 - 310 150395600 - Smed_0375 - transposase IS116/IS110/IS902 family protein 373 63.64 0 402469..403326 + 285 150395601 - Smed_0376 - transposase IS116/IS110/IS902 family protein 374 64.26 0 403375..404787 - 470 150395602 - Smed_0377 - EmrB/QacA family drug resistance transporter 375 60.65 0 405136..406116 + 326 150395603 - Smed_0378 - beta-lactamase domain-containing protein 376 65.54 +1 406307..407809 + 500 150395604 - Smed_0379 - inositol-5-monophosphate dehydrogenase 377 61.15 0 407887..408303 + 138 150395605 - Smed_0380 - hypothetical protein 378 61.53 0 408389..409264 + 291 150395606 - Smed_0381 - carboxymethylenebutenolidase 379 62.26 0 409265..410218 - 317 150395607 - Smed_0382 - LysR family transcriptional regulator 380 61.01 0 410335..411819 + 494 150395608 - Smed_0383 - catalase 381 63.09 0 411903..412853 - 316 150395609 - Smed_0384 - LysR family transcriptional regulator 382 61.62 0 413060..413356 + 98 150395610 - Smed_0385 - hypothetical protein 383 60.76 0 413660..414505 - 281 150395611 - Smed_0386 - hypothetical protein 384 61.57 0 414615..415988 - 457 150395612 - Smed_0387 - glutamate--cysteine ligase 385 63.14 0 416148..416885 - 245 150395613 - Smed_0388 - hypothetical protein 386 63.55 0 416904..418409 - 501 150395614 - Smed_0389 - phosphate transporter 387 61.34 0 418612..419118 - 168 150395615 - Smed_0390 - NUDIX hydrolase 388 65.73 +1 419392..420249 - 285 150395616 - Smed_0391 - GntR domain-containing protein 389 65.25 +1 420394..421662 + 422 150395617 - Smed_0392 - hypothetical protein 390 62.76 0 421682..422578 - 298 150395618 - Smed_0393 - LysR family transcriptional regulator 391 60.83 0 422685..424124 + 479 150395619 - Smed_0394 - D-lactate dehydrogenase (cytochrome) 392 66.75 +1 424121..425338 + 405 150395620 - Smed_0395 - FAD linked oxidase domain-containing protein 61.69 MEAN 2.82 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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