version 1.0
Sinorhizobium medicae WSM419, complete genome - 1..3781904 3529 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3313 62.98 0 3550348..3551922 + 524 150398541 - Smed_3352 - type II and III secretion system protein 3314 65.16 +1 3551931..3552659 + 242 150398542 - Smed_3353 - pilus biogenesis lipoprotein CpaD 3315 63.71 0 3552684..3553970 + 428 150398543 - Smed_3354 - response regulator receiver protein 3316 63.46 0 3554032..3555498 + 488 150398544 - Smed_3355 - type II secretion system protein E 3317 60.93 0 3555560..3556570 + 336 150398545 - Smed_3356 - type II secretion system protein 3318 61.89 0 3556584..3557567 + 327 150398546 - Smed_3357 - type II secretion system protein 3319 67.03 +1 3557846..3558661 - 271 150398547 - Smed_3358 - tetratricopeptide TPR_4 3320 64.16 0 3558798..3560195 + 465 150398548 - Smed_3359 - leucyl aminopeptidase 3321 60.00 0 3560268..3560612 + 114 150398549 - Smed_3360 - MarR family transcriptional regulator 3322 65.17 +1 3560609..3561475 + 288 150398550 - Smed_3361 - NLP/P60 protein 3323 64.06 0 3561585..3562544 - 319 150398551 - Smed_3362 - D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding 3324 63.54 0 3562556..3564184 - 542 150398552 - Smed_3363 - ABC transporter related 3325 62.07 0 3564193..3565323 - 376 150398553 - Smed_3364 - binding-protein-dependent transport systems inner membrane component 3326 58.45 -1 3565323..3566405 - 360 150398554 - Smed_3365 - binding-protein-dependent transport systems inner membrane component 3327 58.60 -1 3566586..3568445 - 619 150398555 - Smed_3366 - extracellular solute-binding protein 3328 65.17 +1 3568690..3569757 + 355 150398556 mepA Smed_3367 - penicillin-insensitive murein endopeptidase 3329 61.42 0 3570002..3570382 + 126 150398557 mgsA Smed_3368 - methylglyoxal synthase 3330 64.51 0 3570692..3571711 + 339 150398558 glk Smed_3369 - glucokinase 3331 63.62 0 3571820..3573625 + 601 150398559 - Smed_3370 - ABC transporter related 3332 66.54 +1 3573660..3574478 + 272 150398560 - Smed_3371 - dihydrodipicolinate reductase 3333 62.89 0 3574506..3575141 + 211 150398561 - Smed_3372 - phosphoglyceromutase 3334 64.15 0 3575288..3576160 - 290 150398562 - Smed_3373 - methylated-DNA--protein-cysteine methyltransferase 3335 60.64 0 3576240..3576737 - 165 150398563 - Smed_3374 - hypothetical protein 3336 64.28 0 3576850..3577560 + 236 150398564 - Smed_3375 - endonuclease III 3337 65.82 +1 3577621..3578214 - 197 150398565 - Smed_3376 - TetR family transcriptional regulator 3338 58.22 -1 3578283..3578708 + 141 150398566 - Smed_3377 - glyoxalase/bleomycin resistance protein/dioxygenase 3339 62.94 0 3578835..3579827 + 330 150398567 - Smed_3378 - ribokinase-like domain-containing protein 3340 64.31 0 3579975..3580526 - 183 150398568 - Smed_3379 - hypothetical protein 3341 63.04 0 3580661..3581734 + 357 150398569 - Smed_3380 - glyoxylate reductase 3342 62.45 0 3581962..3584976 - 1004 150398570 - Smed_3381 - DNA polymerase I 3343 61.04 0 3585430..3585873 + 147 150398571 - Smed_3382 - MarR family transcriptional regulator 3344 63.36 0 3585956..3587347 + 463 150398572 - Smed_3383 - hypothetical protein 3345 58.86 -1 3587713..3588660 + 315 150398573 - Smed_3384 - hypothetical protein 3346 59.96 0 3588712..3589203 - 163 150398574 - Smed_3385 - putative signal peptide protein 3347 63.06 0 3589318..3590205 - 295 150398575 - Smed_3386 - hypothetical protein 3348 65.51 +1 3590494..3590925 - 143 150398576 - Smed_3387 - pyrimidine dimer DNA glycosylase 3349 65.25 +1 3591205..3593457 + 750 150398577 - Smed_3388 - 1A family penicillin-binding protein 3350 60.38 0 3593690..3595615 + 641 150398578 - Smed_3389 - molecular chaperone DnaK 3351 62.59 0 3595879..3597006 + 375 150398579 - Smed_3390 - chaperone protein DnaJ 3352 63.21 0 3597180..3598046 - 288 150398580 - Smed_3391 - hypothetical protein 3353 62.74 0 3598050..3598685 - 211 150398581 - Smed_3392 - hypothetical protein 3354 61.79 0 3598801..3599805 - 334 150398582 - Smed_3393 - phosphate transporter 3355 61.09 0 3599805..3600449 - 214 150398583 - Smed_3394 - hypothetical protein 3356 66.34 +1 3600571..3601800 + 409 150398584 recF Smed_3395 - recombination protein F 3357 66.28 +1 3601840..3602616 + 258 150398585 - Smed_3396 - molybdopterin biosynthesis protein MoeB 3358 63.83 0 3602662..3603330 - 222 150398586 - Smed_3397 - TetR family transcriptional regulator 3359 63.36 0 3603392..3606538 - 1048 150398587 - Smed_3398 - hydrophobe/amphiphile efflux-1 (HAE1) family protein 3360 63.64 0 3606549..3607769 - 406 150398588 - Smed_3399 - RND family efflux transporter MFP subunit 3361 62.22 0 3608140..3609150 - 336 150398589 - Smed_3400 - ABC transporter related 3362 62.44 0 3609167..3610231 - 354 150398590 - Smed_3401 - oxidoreductase domain-containing protein 3363 61.19 0 3610228..3611067 - 279 150398591 - Smed_3402 - binding-protein-dependent transport systems inner membrane component 3364 60.23 0 3611080..3612027 - 315 150398592 - Smed_3403 - binding-protein-dependent transport systems inner membrane component 3365 67.69 +2 3612045..3612239 - 64 150398593 - Smed_3404 - hypothetical protein 3366 59.84 0 3612265..3613524 - 419 150398594 - Smed_3405 - extracellular solute-binding protein 3367 65.55 +1 3613582..3614478 - 298 150398595 murQ Smed_3406 - N-acetylmuramic acid-6-phosphate etherase 3368 64.75 +1 3614676..3615560 + 294 150398596 - Smed_3407 - ATPase BadF/BadG/BcrA/BcrD type 3369 64.18 0 3615557..3616321 + 254 150398597 - Smed_3408 - GntR family transcriptional regulator 3370 66.28 +1 3616361..3617386 + 341 150398598 - Smed_3409 - glutamine--fructose-6-phosphate transaminase (isomerizing) 3371 65.55 +1 3617383..3618543 + 386 150398599 - Smed_3410 - N-acetylglucosamine-6-phosphate deacetylase 3372 67.89 +2 3618646..3619383 - 245 150398600 - Smed_3411 - CutC family protein 3373 66.12 +1 3619380..3620291 - 303 150398601 - Smed_3412 - ROK family protein 3374 66.45 +1 3620288..3621649 - 453 150398602 - Smed_3413 - hypothetical protein 3375 62.55 0 3621988..3622740 + 250 150398603 - Smed_3414 - CysZ-like protein 3376 61.43 0 3622949..3623158 + 69 150398604 - Smed_3415 - hypothetical protein 3377 60.02 0 3623232..3624224 - 330 150398605 - Smed_3416 - basic membrane lipoprotein 3378 61.77 0 3624476..3625129 - 217 150398606 - Smed_3417 - methionine sulfoxide reductase A 3379 63.84 0 3625188..3625505 - 105 150398607 - Smed_3418 - putative signal peptide protein 3380 67.43 +2 3627958..3628872 + 304 150398608 - Smed_3422 - LysR family transcriptional regulator 3381 58.06 -1 3628907..3629266 - 119 150398609 - Smed_3423 - transport-associated 3382 64.34 0 3629371..3630315 + 314 150398610 - Smed_3424 - auxin efflux carrier 3383 63.48 0 3630346..3631443 - 365 150398611 - Smed_3425 - branched-chain amino acid aminotransferase 3384 66.04 +1 3631742..3632533 - 263 150398612 - Smed_3426 - cytochrome c class I 3385 64.94 +1 3632689..3633441 + 250 150398613 - Smed_3427 - 3-deoxy-manno-octulosonate cytidylyltransferase 3386 61.52 0 3633467..3634321 + 284 150398614 - Smed_3428 - prephenate dehydratase 3387 57.25 -1 3634672..3634809 + 45 150398615 - Smed_3429 - hypothetical protein 3388 64.83 +1 3634952..3635932 - 326 150398616 - Smed_3430 - NUDIX hydrolase 3389 62.72 0 3635935..3636339 - 134 150398617 - Smed_3431 - histidine triad (HIT) protein 3390 64.91 +1 3636635..3638512 + 625 150398618 - Smed_3432 - DNA polymerase III subunits gamma and tau 3391 59.57 0 3638629..3638952 + 107 150398619 - Smed_3433 - hypothetical protein 3392 64.71 +1 3639042..3639653 + 203 150398620 - Smed_3434 - lysine exporter protein LysE/YggA 3393 65.02 +1 3639751..3640356 + 201 150398621 recR Smed_3435 - recombination protein RecR 3394 64.57 +1 3640392..3641630 + 412 150398622 - Smed_3436 - lytic murein transglycosylase 3395 64.37 0 3641836..3643491 - 551 150398623 - Smed_3437 - protein of unknown function DUF894 DitE 3396 61.17 0 3643702..3644319 + 205 150398624 - Smed_3438 - hypothetical protein 3397 61.18 0 3644337..3645995 + 552 150398625 nusA Smed_3439 - transcription elongation factor NusA 3398 63.07 0 3646001..3646723 + 240 150398626 - Smed_3440 - hypothetical protein 3399 65.46 +1 3646829..3649486 + 885 150398627 infB Smed_3441 - translation initiation factor IF-2 3400 61.48 0 3649659..3650063 + 134 150398628 rbfA Smed_3442 - ribosome-binding factor A 3401 63.02 0 3650075..3651007 + 310 150398629 truB Smed_3443 - tRNA pseudouridine synthase B 3402 62.48 0 3651152..3652870 + 572 150398630 - Smed_3444 - signal transduction histidine kinase 3403 57.78 -1 3653110..3653379 + 89 150398631 rpsO Smed_3445 - 30S ribosomal protein S15 3404 61.82 0 3653754..3655898 + 714 150398632 - Smed_3446 - polynucleotide phosphorylase/polyadenylase 3405 64.01 0 3656090..3657106 + 338 150398633 - Smed_3447 - methyltransferase small 3406 63.57 0 3657262..3658068 - 268 150398634 - Smed_3448 - enoyl-(acyl carrier protein) reductase 3407 62.08 0 3658073..3659293 - 406 150398635 - Smed_3449 - 3-oxoacyl-(acyl carrier protein) synthase I 3408 62.02 0 3659342..3659857 - 171 150398636 - Smed_3450 - 3-hydroxydecanoyl-(acyl carrier protein) dehydratase 3409 59.34 0 3660338..3660760 + 140 150398637 - Smed_3451 - ferric uptake regulator family protein 3410 65.09 +1 3660796..3661431 - 211 150398638 - Smed_3452 - hypothetical protein 3411 64.01 0 3661523..3662311 - 262 150398639 - Smed_3453 - hypothetical protein 3412 59.72 0 3662448..3662591 + 47 150398640 - Smed_3454 - hypothetical protein 61.69 MEAN 2.82 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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