version 1.0
Sinorhizobium medicae WSM419, complete genome - 1..3781904 3529 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3138 64.57 +1 3337191..3338192 - 333 150398366 - Smed_3174 - oxidoreductase domain-containing protein 3139 65.04 +1 3338189..3339232 - 347 150398367 - Smed_3175 - periplasmic binding protein/LacI transcriptional regulator 3140 63.42 0 3339534..3340703 + 389 150398368 - Smed_3176 - hypothetical protein 3141 62.06 0 3340859..3342922 - 687 150398369 - Smed_3177 - peptidyl-dipeptidase Dcp 3142 63.88 0 3343230..3344342 + 370 150398370 - Smed_3178 - 3-isopropylmalate dehydrogenase 3143 63.20 0 3344467..3345159 + 230 150398371 - Smed_3179 - phosphoesterase PA-phosphatase related 3144 61.53 0 3345216..3347105 - 629 150398372 - Smed_3180 - major facilitator transporter 3145 59.65 0 3347400..3347570 + 56 150398373 - Smed_3181 - hypothetical protein 3146 58.84 -1 3347683..3348717 + 344 150398374 - Smed_3182 - aspartate-semialdehyde dehydrogenase 3147 64.60 +1 3348875..3349696 + 273 150398375 - Smed_3183 - lytic murein transglycosylase 3148 66.96 +1 3349796..3350140 + 114 150398376 - Smed_3184 - hypothetical protein 3149 60.49 0 3350301..3350948 - 215 150398377 - Smed_3185 - carbonate dehydratase 3150 66.10 +1 3351145..3352026 - 293 150398378 - Smed_3186 - pyridoxamine kinase 3151 63.85 0 3352309..3357096 + 1595 150398379 - Smed_3187 - NAD-glutamate dehydrogenase 3152 64.66 +1 3357221..3358612 + 463 150398380 - Smed_3188 - major facilitator transporter 3153 64.06 0 3358668..3360278 - 536 150398381 purH Smed_3189 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 3154 63.80 0 3360430..3362136 - 568 150398382 - Smed_3190 - heparinase II/III family protein 3155 64.69 +1 3362382..3363794 - 470 150398383 - Smed_3191 - Fmu (Sun) domain-containing protein 3156 62.81 0 3363794..3364753 - 319 150398384 - Smed_3192 - heat shock protein HtpX 3157 64.18 0 3364935..3365135 + 66 150398385 - Smed_3193 - hypothetical protein 3158 61.08 0 3365302..3367251 - 649 150398386 - Smed_3194 - acetyl-CoA synthetase 3159 61.95 0 3367525..3368223 + 232 150398387 - Smed_3195 - hypothetical protein 3160 62.00 0 3368314..3370221 - 635 150398388 - Smed_3196 - AMP-dependent synthetase and ligase 3161 62.12 0 3370334..3370993 - 219 150398389 - Smed_3197 - alanine racemase domain-containing protein 3162 62.79 0 3371250..3373880 + 876 150398390 leuS Smed_3198 - leucyl-tRNA synthetase 3163 63.00 0 3373867..3374412 + 181 150398391 - Smed_3199 - hypothetical protein 3164 62.50 0 3374425..3375456 + 343 150398392 holA Smed_3200 - DNA polymerase III subunit delta 3165 60.83 0 3375491..3376381 - 296 150398393 - Smed_3201 - parB-like partition protein 3166 56.48 -1 3376414..3377208 - 264 150398394 - Smed_3202 - cobyrinic acid ac-diamide synthase 3167 54.67 -2 3377223..3377864 - 213 150398395 gidB Smed_3203 - glucose-inhibited division protein B 3168 58.60 -1 3377873..3379744 - 623 150398396 - Smed_3204 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 3169 60.24 0 3379862..3381184 - 440 150398397 trmE Smed_3205 - tRNA modification GTPase TrmE 3170 58.29 -1 3381576..3382841 - 421 150398398 rho Smed_3206 - transcription termination factor Rho 3171 57.83 -1 3383037..3383579 - 180 150398399 - Smed_3207 - hypothetical protein 3172 63.57 0 3383576..3384607 - 343 150398400 hemE Smed_3208 - uroporphyrinogen decarboxylase 3173 62.04 0 3385013..3385834 + 273 150398401 - Smed_3209 - hypothetical protein 3174 62.17 0 3385891..3386490 + 199 150398402 - Smed_3210 - Maf-like protein 3175 62.60 0 3386483..3387343 + 286 150398403 aroE Smed_3211 - shikimate 5-dehydrogenase 3176 61.20 0 3387340..3387924 + 194 150398404 coaE Smed_3212 - dephospho-CoA kinase 3177 60.49 0 3388060..3388788 + 242 150398405 - Smed_3213 - DNA polymerase III subunit epsilon 3178 62.13 0 3388950..3389456 - 168 150398406 - Smed_3214 - preprotein translocase subunit SecB 3179 62.30 0 3389549..3390097 - 182 150398407 - Smed_3215 - FxsA cytoplasmic membrane protein 3180 56.74 -1 3390232..3390936 + 234 150398408 - Smed_3216 - import inner membrane translocase subunit Tim44 3181 62.73 0 3390954..3392072 + 372 150398409 - Smed_3217 - MltA domain-containing protein 3182 65.10 +1 3392065..3392640 + 191 150398410 - Smed_3218 - Smr protein/MutS2 3183 61.64 0 3392624..3393001 + 125 150398411 - Smed_3219 - XRE family transcriptional regulator 3184 63.01 0 3393136..3395571 + 811 150398412 gyrB Smed_3220 - DNA gyrase subunit B 3185 62.31 0 3395649..3396245 - 198 150398413 - Smed_3221 - nitroreductase 3186 63.02 0 3396441..3397895 + 484 150398414 - Smed_3222 - succinic semialdehyde dehydrogenase 3187 65.79 +1 3398032..3398832 + 266 150398415 - Smed_3223 - 2-dehydro-3-deoxyglucarate aldolase 3188 61.89 0 3398833..3399711 - 292 150398416 - Smed_3224 - GntR family transcriptional regulator 3189 64.67 +1 3399877..3401382 + 501 150398417 - Smed_3225 - Altronate dehydratase 3190 63.43 0 3401447..3402466 + 339 150398418 - Smed_3226 - pyridoxal 4-dehydrogenase 3191 61.01 0 3402576..3403565 + 329 150398419 - Smed_3227 - periplasmic binding protein/LacI transcriptional regulator 3192 62.42 0 3403680..3405233 + 517 150398420 - Smed_3228 - ABC transporter related 3193 62.15 0 3405270..3406244 + 324 150398421 - Smed_3229 - monosaccharide-transporting ATPase 3194 65.09 +1 3406291..3407307 + 338 150398422 - Smed_3230 - alcohol dehydrogenase 3195 61.75 0 3407395..3407679 - 94 150398423 - Smed_3231 - plasmid stabilization system protein 3196 64.72 +1 3407676..3407984 - 102 150398424 - Smed_3232 - addiction module antitoxin 3197 61.80 0 3408216..3409490 + 424 150398425 - Smed_3233 - polyhydroxyalkanoate depolymerase, intracellular 3198 59.86 0 3409681..3410106 + 141 150398426 - Smed_3234 - hypothetical protein 3199 63.36 0 3410229..3410984 + 251 150398427 - Smed_3235 - hypothetical protein 3200 60.03 0 3411141..3411788 + 215 150398428 - Smed_3236 - N-(5'-phosphoribosyl)anthranilate isomerase 3201 62.33 0 3411810..3413030 + 406 150398429 - Smed_3237 - tryptophan synthase subunit beta 3202 64.29 0 3413036..3413875 + 279 150398430 trpA Smed_3238 - tryptophan synthase subunit alpha 3203 60.66 0 3413929..3414843 + 304 150398431 - Smed_3239 - acetyl-CoA carboxylase subunit beta 3204 64.88 +1 3414978..3416321 + 447 150398432 - Smed_3240 - FolC bifunctional protein 3205 56.79 -1 3416463..3416786 - 107 150398433 - Smed_3241 - thioredoxin 3206 65.07 +1 3416868..3420437 - 1189 150398434 - Smed_3242 - double-strand break repair helicase AddA 3207 66.01 +1 3420427..3423606 - 1059 150398435 - Smed_3243 - double-strand break repair protein AddB 3208 62.02 0 3423608..3424339 - 243 150398436 - Smed_3244 - nucleotidyl transferase 3209 62.71 0 3424346..3425860 - 504 150398437 - Smed_3245 - hypothetical protein 3210 63.40 0 3425870..3428350 - 826 150398438 - Smed_3246 - histidine kinase 3211 61.24 0 3428654..3430054 - 466 150398439 - Smed_3247 - S-adenosyl-L-homocysteine hydrolase 3212 61.56 0 3430211..3430504 - 97 150398440 - Smed_3248 - phosphotransferase system, phosphocarrier protein HPr 3213 59.45 0 3430501..3430902 - 133 150398441 - Smed_3249 - PTS system fructose subfamily IIA component 3214 63.99 0 3431067..3431552 - 161 150398442 - Smed_3250 - HPr kinase 3215 63.27 0 3431549..3433285 - 578 150398443 - Smed_3251 - integral membrane sensor signal transduction histidine kinase 3216 61.55 0 3433476..3434198 - 240 150398444 - Smed_3252 - two component transcriptional regulator 3217 62.20 0 3434539..3436149 + 536 150398445 - Smed_3253 - phosphoenolpyruvate carboxykinase 3218 64.37 0 3436255..3436689 + 144 150398446 - Smed_3254 - hypothetical protein 3219 60.34 0 3436779..3437252 + 157 150398447 - Smed_3255 - hypothetical protein 3220 66.01 +1 3437367..3437978 + 203 150398448 - Smed_3256 - 2OG-Fe(II) oxygenase 3221 61.35 0 3438155..3439150 - 331 150398449 - Smed_3257 - pantothenate kinase 3222 59.57 0 3439147..3439470 - 107 150398450 hisE Smed_3258 - phosphoribosyl-ATP pyrophosphatase 3223 63.58 0 3439495..3440271 - 258 150398451 - Smed_3259 - imidazole glycerol phosphate synthase subunit HisF 3224 63.86 0 3440268..3441014 - 248 150398452 - Smed_3260 - 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 3225 63.44 0 3441048..3441698 - 216 150398453 hisH Smed_3261 - imidazole glycerol phosphate synthase subunit HisH 3226 63.31 0 3441698..3442174 - 158 150398454 - Smed_3262 - hypothetical protein 3227 62.40 0 3442201..3442809 - 202 150398455 hisB Smed_3263 - imidazoleglycerol-phosphate dehydratase 3228 62.19 0 3443126..3443683 + 185 150398456 - Smed_3264 - ATP-dependent protease peptidase subunit 3229 61.85 0 3443673..3444191 + 172 150398457 - Smed_3265 - GCN5-related N-acetyltransferase 3230 62.69 0 3444191..3445498 + 435 150398458 hslU Smed_3266 - ATP-dependent protease ATP-binding subunit 3231 62.04 0 3445687..3446637 + 316 150398459 - Smed_3267 - hypothetical protein 3232 63.88 0 3446902..3448302 + 466 150398460 - Smed_3268 - cytochrome P450 3233 66.32 +1 3448396..3450399 + 667 150398461 - Smed_3269 - hydantoinase/oxoprolinase 3234 62.44 0 3450562..3452736 + 724 150398462 - Smed_3270 - malate synthase G 3235 62.07 0 3452834..3453508 - 224 150398463 - Smed_3271 - ErfK/YbiS/YcfS/YnhG family protein 3236 62.29 0 3453704..3454228 + 174 150398464 - Smed_3272 - hypothetical protein 3237 62.56 0 3454265..3454849 - 194 150398465 - Smed_3273 - two component Fis family transcriptional regulator 61.69 MEAN 2.82 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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