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Sinorhizobium medicae WSM419, complete genome - 1..3781904 3529 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3117 56.74 -1 3302831..3303676 + 281 150398345 - Smed_3153 - amidohydrolase 2 3118 59.59 0 3304167..3305324 - 385 150398346 - Smed_3154 - hypothetical protein 3119 63.67 0 3305503..3314115 - 2870 150398347 - Smed_3155 - glycosyltransferase 36 3120 63.31 0 3314459..3315352 - 297 150398348 - Smed_3156 - LysR family transcriptional regulator 3121 63.50 0 3315466..3316884 + 472 150398349 - Smed_3157 - hypothetical protein 3122 64.14 0 3316895..3318316 + 473 150398350 - Smed_3158 - FAD linked oxidase domain-containing protein 3123 64.51 +1 3318346..3319878 + 510 150398351 - Smed_3159 - aldehyde dehydrogenase 3124 63.18 0 3319895..3321127 + 410 150398352 - Smed_3160 - aminotransferase class I and II 3125 63.39 0 3321247..3321795 - 182 150398353 - Smed_3161 - XRE family transcriptional regulator 3126 65.47 +1 3321941..3323278 + 445 150398354 - Smed_3162 - beta alanine--pyruvate transaminase 3127 68.16 +2 3323368..3324639 - 423 150398355 - Smed_3163 - hydroxypyruvate reductase 3128 63.89 0 3324751..3326406 - 551 150398356 - Smed_3164 - choline dehydrogenase 3129 65.50 +1 3326566..3327339 - 257 150398357 - Smed_3165 - 3-ketoacyl-(acyl-carrier-protein) reductase 3130 62.98 0 3327336..3328856 - 506 150398358 - Smed_3166 - putative dehydrogenase transmembrane protein 3131 62.26 0 3328853..3329965 - 370 150398359 - Smed_3167 - ABC transporter related 3132 59.75 0 3329970..3330851 - 293 150398360 - Smed_3168 - binding-protein-dependent transport systems inner membrane component 3133 58.36 -1 3330851..3331729 - 292 150398361 - Smed_3169 - binding-protein-dependent transport systems inner membrane component 3134 61.61 0 3331901..3333145 - 414 150398362 - Smed_3170 - extracellular solute-binding protein 3135 64.15 0 3333287..3334795 - 502 150398363 - Smed_3171 - aldehyde dehydrogenase 3136 65.13 +1 3334795..3335574 - 259 150398364 - Smed_3172 - enoyl-CoA hydratase/isomerase 3137 62.35 0 3335567..3337186 - 539 150398365 - Smed_3173 - coenzyme A transferase 3138 64.57 +1 3337191..3338192 - 333 150398366 - Smed_3174 - oxidoreductase domain-containing protein 3139 65.04 +1 3338189..3339232 - 347 150398367 - Smed_3175 - periplasmic binding protein/LacI transcriptional regulator 3140 63.42 0 3339534..3340703 + 389 150398368 - Smed_3176 - hypothetical protein 3141 62.06 0 3340859..3342922 - 687 150398369 - Smed_3177 - peptidyl-dipeptidase Dcp 3142 63.88 0 3343230..3344342 + 370 150398370 - Smed_3178 - 3-isopropylmalate dehydrogenase 3143 63.20 0 3344467..3345159 + 230 150398371 - Smed_3179 - phosphoesterase PA-phosphatase related 3144 61.53 0 3345216..3347105 - 629 150398372 - Smed_3180 - major facilitator transporter 3145 59.65 0 3347400..3347570 + 56 150398373 - Smed_3181 - hypothetical protein 3146 58.84 -1 3347683..3348717 + 344 150398374 - Smed_3182 - aspartate-semialdehyde dehydrogenase 3147 64.60 +1 3348875..3349696 + 273 150398375 - Smed_3183 - lytic murein transglycosylase 3148 66.96 +1 3349796..3350140 + 114 150398376 - Smed_3184 - hypothetical protein 3149 60.49 0 3350301..3350948 - 215 150398377 - Smed_3185 - carbonate dehydratase 3150 66.10 +1 3351145..3352026 - 293 150398378 - Smed_3186 - pyridoxamine kinase 3151 63.85 0 3352309..3357096 + 1595 150398379 - Smed_3187 - NAD-glutamate dehydrogenase 3152 64.66 +1 3357221..3358612 + 463 150398380 - Smed_3188 - major facilitator transporter 3153 64.06 0 3358668..3360278 - 536 150398381 purH Smed_3189 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 3154 63.80 0 3360430..3362136 - 568 150398382 - Smed_3190 - heparinase II/III family protein 3155 64.69 +1 3362382..3363794 - 470 150398383 - Smed_3191 - Fmu (Sun) domain-containing protein 3156 62.81 0 3363794..3364753 - 319 150398384 - Smed_3192 - heat shock protein HtpX 3157 64.18 0 3364935..3365135 + 66 150398385 - Smed_3193 - hypothetical protein 3158 61.08 0 3365302..3367251 - 649 150398386 - Smed_3194 - acetyl-CoA synthetase 3159 61.95 0 3367525..3368223 + 232 150398387 - Smed_3195 - hypothetical protein 3160 62.00 0 3368314..3370221 - 635 150398388 - Smed_3196 - AMP-dependent synthetase and ligase 3161 62.12 0 3370334..3370993 - 219 150398389 - Smed_3197 - alanine racemase domain-containing protein 3162 62.79 0 3371250..3373880 + 876 150398390 leuS Smed_3198 - leucyl-tRNA synthetase 3163 63.00 0 3373867..3374412 + 181 150398391 - Smed_3199 - hypothetical protein 3164 62.50 0 3374425..3375456 + 343 150398392 holA Smed_3200 - DNA polymerase III subunit delta 3165 60.83 0 3375491..3376381 - 296 150398393 - Smed_3201 - parB-like partition protein 3166 56.48 -1 3376414..3377208 - 264 150398394 - Smed_3202 - cobyrinic acid ac-diamide synthase 3167 54.67 -2 3377223..3377864 - 213 150398395 gidB Smed_3203 - glucose-inhibited division protein B 3168 58.60 -1 3377873..3379744 - 623 150398396 - Smed_3204 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 3169 60.24 0 3379862..3381184 - 440 150398397 trmE Smed_3205 - tRNA modification GTPase TrmE 3170 58.29 -1 3381576..3382841 - 421 150398398 rho Smed_3206 - transcription termination factor Rho 3171 57.83 -1 3383037..3383579 - 180 150398399 - Smed_3207 - hypothetical protein 3172 63.57 0 3383576..3384607 - 343 150398400 hemE Smed_3208 - uroporphyrinogen decarboxylase 3173 62.04 0 3385013..3385834 + 273 150398401 - Smed_3209 - hypothetical protein 3174 62.17 0 3385891..3386490 + 199 150398402 - Smed_3210 - Maf-like protein 3175 62.60 0 3386483..3387343 + 286 150398403 aroE Smed_3211 - shikimate 5-dehydrogenase 3176 61.20 0 3387340..3387924 + 194 150398404 coaE Smed_3212 - dephospho-CoA kinase 3177 60.49 0 3388060..3388788 + 242 150398405 - Smed_3213 - DNA polymerase III subunit epsilon 3178 62.13 0 3388950..3389456 - 168 150398406 - Smed_3214 - preprotein translocase subunit SecB 3179 62.30 0 3389549..3390097 - 182 150398407 - Smed_3215 - FxsA cytoplasmic membrane protein 3180 56.74 -1 3390232..3390936 + 234 150398408 - Smed_3216 - import inner membrane translocase subunit Tim44 3181 62.73 0 3390954..3392072 + 372 150398409 - Smed_3217 - MltA domain-containing protein 3182 65.10 +1 3392065..3392640 + 191 150398410 - Smed_3218 - Smr protein/MutS2 3183 61.64 0 3392624..3393001 + 125 150398411 - Smed_3219 - XRE family transcriptional regulator 3184 63.01 0 3393136..3395571 + 811 150398412 gyrB Smed_3220 - DNA gyrase subunit B 3185 62.31 0 3395649..3396245 - 198 150398413 - Smed_3221 - nitroreductase 3186 63.02 0 3396441..3397895 + 484 150398414 - Smed_3222 - succinic semialdehyde dehydrogenase 3187 65.79 +1 3398032..3398832 + 266 150398415 - Smed_3223 - 2-dehydro-3-deoxyglucarate aldolase 3188 61.89 0 3398833..3399711 - 292 150398416 - Smed_3224 - GntR family transcriptional regulator 3189 64.67 +1 3399877..3401382 + 501 150398417 - Smed_3225 - Altronate dehydratase 3190 63.43 0 3401447..3402466 + 339 150398418 - Smed_3226 - pyridoxal 4-dehydrogenase 3191 61.01 0 3402576..3403565 + 329 150398419 - Smed_3227 - periplasmic binding protein/LacI transcriptional regulator 3192 62.42 0 3403680..3405233 + 517 150398420 - Smed_3228 - ABC transporter related 3193 62.15 0 3405270..3406244 + 324 150398421 - Smed_3229 - monosaccharide-transporting ATPase 3194 65.09 +1 3406291..3407307 + 338 150398422 - Smed_3230 - alcohol dehydrogenase 3195 61.75 0 3407395..3407679 - 94 150398423 - Smed_3231 - plasmid stabilization system protein 3196 64.72 +1 3407676..3407984 - 102 150398424 - Smed_3232 - addiction module antitoxin 3197 61.80 0 3408216..3409490 + 424 150398425 - Smed_3233 - polyhydroxyalkanoate depolymerase, intracellular 3198 59.86 0 3409681..3410106 + 141 150398426 - Smed_3234 - hypothetical protein 3199 63.36 0 3410229..3410984 + 251 150398427 - Smed_3235 - hypothetical protein 3200 60.03 0 3411141..3411788 + 215 150398428 - Smed_3236 - N-(5'-phosphoribosyl)anthranilate isomerase 3201 62.33 0 3411810..3413030 + 406 150398429 - Smed_3237 - tryptophan synthase subunit beta 3202 64.29 0 3413036..3413875 + 279 150398430 trpA Smed_3238 - tryptophan synthase subunit alpha 3203 60.66 0 3413929..3414843 + 304 150398431 - Smed_3239 - acetyl-CoA carboxylase subunit beta 3204 64.88 +1 3414978..3416321 + 447 150398432 - Smed_3240 - FolC bifunctional protein 3205 56.79 -1 3416463..3416786 - 107 150398433 - Smed_3241 - thioredoxin 3206 65.07 +1 3416868..3420437 - 1189 150398434 - Smed_3242 - double-strand break repair helicase AddA 3207 66.01 +1 3420427..3423606 - 1059 150398435 - Smed_3243 - double-strand break repair protein AddB 3208 62.02 0 3423608..3424339 - 243 150398436 - Smed_3244 - nucleotidyl transferase 3209 62.71 0 3424346..3425860 - 504 150398437 - Smed_3245 - hypothetical protein 3210 63.40 0 3425870..3428350 - 826 150398438 - Smed_3246 - histidine kinase 3211 61.24 0 3428654..3430054 - 466 150398439 - Smed_3247 - S-adenosyl-L-homocysteine hydrolase 3212 61.56 0 3430211..3430504 - 97 150398440 - Smed_3248 - phosphotransferase system, phosphocarrier protein HPr 3213 59.45 0 3430501..3430902 - 133 150398441 - Smed_3249 - PTS system fructose subfamily IIA component 3214 63.99 0 3431067..3431552 - 161 150398442 - Smed_3250 - HPr kinase 3215 63.27 0 3431549..3433285 - 578 150398443 - Smed_3251 - integral membrane sensor signal transduction histidine kinase 3216 61.55 0 3433476..3434198 - 240 150398444 - Smed_3252 - two component transcriptional regulator 61.69 MEAN 2.82 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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