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Sinorhizobium medicae WSM419, complete genome - 1..3781904 3529 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3076 63.89 0 3256627..3258138 + 503 150398304 - Smed_3110 - peptidase M48 Ste24p 3077 63.78 0 3258437..3259303 - 288 150398305 rpoH2 Smed_3111 - RNA polymerase factor sigma-32 3078 58.60 -1 3259740..3260309 - 189 150398306 - Smed_3112 - CarD family transcriptional regulator 3079 56.34 -1 3260717..3261055 - 112 150398307 - Smed_3113 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 3080 66.91 +1 3261454..3261867 - 137 150398308 - Smed_3114 - RNA-binding S4 domain-containing protein 3081 64.82 +1 3261877..3264957 - 1026 150398309 - Smed_3115 - helicase domain-containing protein 3082 60.33 0 3265713..3266438 - 241 150398310 - Smed_3116 - acetoacetyl-CoA reductase 3083 65.82 +1 3266553..3267734 - 393 150398311 - Smed_3117 - acetyl-CoA acetyltransferase 3084 54.75 -2 3267957..3268535 + 192 150398312 - Smed_3118 - polyhydroxyalkonate synthesis repressor, PhaR 3085 59.68 0 3268617..3268802 - 61 150398313 rpmF Smed_3119 - 50S ribosomal protein L32 3086 63.27 0 3268940..3269587 - 215 150398314 - Smed_3120 - glutathione S-transferase domain-containing protein 3087 64.64 +1 3269666..3270454 - 262 150398315 mtgA Smed_3121 - monofunctional biosynthetic peptidoglycan transglycosylase 3088 65.57 +1 3270606..3271520 + 304 150398316 - Smed_3122 - polyprenyl synthetase 3089 62.12 0 3271524..3272579 + 351 150398317 - Smed_3123 - histidinol-phosphate aminotransferase 3090 60.84 0 3272642..3273430 - 262 150398318 - Smed_3124 - short chain dehydrogenase 3091 63.78 0 3273447..3274934 - 495 150398319 - Smed_3125 - ABC transporter related 3092 62.17 0 3274961..3275893 - 310 150398320 - Smed_3126 - monosaccharide-transporting ATPase 3093 63.08 0 3276019..3276993 - 324 150398321 - Smed_3127 - monosaccharide-transporting ATPase 3094 59.46 0 3277164..3278009 + 281 150398322 - Smed_3128 - transketolase domain-containing protein 3095 65.63 +1 3278009..3278977 + 322 150398323 - Smed_3129 - transketolase domain-containing protein 3096 65.58 +1 3279052..3280521 + 489 150398324 - Smed_3130 - carbohydrate kinase FGGY 3097 62.67 0 3280545..3281495 + 316 150398325 - Smed_3131 - DeoR family transcriptional regulator 3098 62.34 0 3281541..3282326 + 261 150398326 - Smed_3132 - short-chain dehydrogenase/reductase SDR 3099 63.64 0 3282410..3283663 - 417 150398327 ispG Smed_3133 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 3100 62.22 0 3283841..3285031 - 396 150398328 - Smed_3134 - major facilitator transporter 3101 64.54 +1 3285139..3285936 - 265 150398329 - Smed_3135 - DeoR family transcriptional regulator 3102 60.72 0 3286188..3286961 + 257 150398330 - Smed_3136 - extracellular solute-binding protein 3103 63.58 0 3287104..3287784 + 226 150398331 - Smed_3137 - polar amino acid ABC transporter, inner membrane subunit 3104 66.54 +1 3287781..3288542 + 253 150398332 - Smed_3138 - ABC transporter related 3105 63.23 0 3288619..3292173 - 1184 150398333 - Smed_3139 - pyruvate carboxylase 3106 59.11 0 3292227..3292967 - 246 150398334 - Smed_3140 - regulatory protein LuxR 3107 58.64 -1 3293135..3293296 - 53 150398335 - Smed_3141 - hypothetical protein 3108 62.80 0 3293350..3295107 + 585 150398336 - Smed_3142 - cyclic beta-1,2-glucan ABC transporter 3109 57.16 -1 3295999..3296661 + 220 150398337 - Smed_3145 - GntR family transcriptional regulator 3110 60.48 0 3296658..3298127 + 489 150398338 - Smed_3146 - sulfatase 3111 58.55 -1 3298164..3299198 + 344 150398339 - Smed_3147 - aliphatic sulfonate ABC transporter periplasmic ligand-binding protein 3112 58.30 -1 3299209..3300009 + 266 150398340 - Smed_3148 - ABC transporter related 3113 57.49 -1 3300006..3300332 + 108 150398341 - Smed_3149 - hypothetical protein 3114 59.25 0 3300329..3301150 + 273 150398342 - Smed_3150 - binding-protein-dependent transport systems inner membrane component 3115 58.71 -1 3301147..3301938 + 263 150398343 - Smed_3151 - binding-protein-dependent transport systems inner membrane component 3116 62.78 0 3301935..3302834 + 299 150398344 - Smed_3152 - pyridoxal 4-dehydrogenase 3117 56.74 -1 3302831..3303676 + 281 150398345 - Smed_3153 - amidohydrolase 2 3118 59.59 0 3304167..3305324 - 385 150398346 - Smed_3154 - hypothetical protein 3119 63.67 0 3305503..3314115 - 2870 150398347 - Smed_3155 - glycosyltransferase 36 3120 63.31 0 3314459..3315352 - 297 150398348 - Smed_3156 - LysR family transcriptional regulator 3121 63.50 0 3315466..3316884 + 472 150398349 - Smed_3157 - hypothetical protein 3122 64.14 0 3316895..3318316 + 473 150398350 - Smed_3158 - FAD linked oxidase domain-containing protein 3123 64.51 +1 3318346..3319878 + 510 150398351 - Smed_3159 - aldehyde dehydrogenase 3124 63.18 0 3319895..3321127 + 410 150398352 - Smed_3160 - aminotransferase class I and II 3125 63.39 0 3321247..3321795 - 182 150398353 - Smed_3161 - XRE family transcriptional regulator 3126 65.47 +1 3321941..3323278 + 445 150398354 - Smed_3162 - beta alanine--pyruvate transaminase 3127 68.16 +2 3323368..3324639 - 423 150398355 - Smed_3163 - hydroxypyruvate reductase 3128 63.89 0 3324751..3326406 - 551 150398356 - Smed_3164 - choline dehydrogenase 3129 65.50 +1 3326566..3327339 - 257 150398357 - Smed_3165 - 3-ketoacyl-(acyl-carrier-protein) reductase 3130 62.98 0 3327336..3328856 - 506 150398358 - Smed_3166 - putative dehydrogenase transmembrane protein 3131 62.26 0 3328853..3329965 - 370 150398359 - Smed_3167 - ABC transporter related 3132 59.75 0 3329970..3330851 - 293 150398360 - Smed_3168 - binding-protein-dependent transport systems inner membrane component 3133 58.36 -1 3330851..3331729 - 292 150398361 - Smed_3169 - binding-protein-dependent transport systems inner membrane component 3134 61.61 0 3331901..3333145 - 414 150398362 - Smed_3170 - extracellular solute-binding protein 3135 64.15 0 3333287..3334795 - 502 150398363 - Smed_3171 - aldehyde dehydrogenase 3136 65.13 +1 3334795..3335574 - 259 150398364 - Smed_3172 - enoyl-CoA hydratase/isomerase 3137 62.35 0 3335567..3337186 - 539 150398365 - Smed_3173 - coenzyme A transferase 3138 64.57 +1 3337191..3338192 - 333 150398366 - Smed_3174 - oxidoreductase domain-containing protein 3139 65.04 +1 3338189..3339232 - 347 150398367 - Smed_3175 - periplasmic binding protein/LacI transcriptional regulator 3140 63.42 0 3339534..3340703 + 389 150398368 - Smed_3176 - hypothetical protein 3141 62.06 0 3340859..3342922 - 687 150398369 - Smed_3177 - peptidyl-dipeptidase Dcp 3142 63.88 0 3343230..3344342 + 370 150398370 - Smed_3178 - 3-isopropylmalate dehydrogenase 3143 63.20 0 3344467..3345159 + 230 150398371 - Smed_3179 - phosphoesterase PA-phosphatase related 3144 61.53 0 3345216..3347105 - 629 150398372 - Smed_3180 - major facilitator transporter 3145 59.65 0 3347400..3347570 + 56 150398373 - Smed_3181 - hypothetical protein 3146 58.84 -1 3347683..3348717 + 344 150398374 - Smed_3182 - aspartate-semialdehyde dehydrogenase 3147 64.60 +1 3348875..3349696 + 273 150398375 - Smed_3183 - lytic murein transglycosylase 3148 66.96 +1 3349796..3350140 + 114 150398376 - Smed_3184 - hypothetical protein 3149 60.49 0 3350301..3350948 - 215 150398377 - Smed_3185 - carbonate dehydratase 3150 66.10 +1 3351145..3352026 - 293 150398378 - Smed_3186 - pyridoxamine kinase 3151 63.85 0 3352309..3357096 + 1595 150398379 - Smed_3187 - NAD-glutamate dehydrogenase 3152 64.66 +1 3357221..3358612 + 463 150398380 - Smed_3188 - major facilitator transporter 3153 64.06 0 3358668..3360278 - 536 150398381 purH Smed_3189 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 3154 63.80 0 3360430..3362136 - 568 150398382 - Smed_3190 - heparinase II/III family protein 3155 64.69 +1 3362382..3363794 - 470 150398383 - Smed_3191 - Fmu (Sun) domain-containing protein 3156 62.81 0 3363794..3364753 - 319 150398384 - Smed_3192 - heat shock protein HtpX 3157 64.18 0 3364935..3365135 + 66 150398385 - Smed_3193 - hypothetical protein 3158 61.08 0 3365302..3367251 - 649 150398386 - Smed_3194 - acetyl-CoA synthetase 3159 61.95 0 3367525..3368223 + 232 150398387 - Smed_3195 - hypothetical protein 3160 62.00 0 3368314..3370221 - 635 150398388 - Smed_3196 - AMP-dependent synthetase and ligase 3161 62.12 0 3370334..3370993 - 219 150398389 - Smed_3197 - alanine racemase domain-containing protein 3162 62.79 0 3371250..3373880 + 876 150398390 leuS Smed_3198 - leucyl-tRNA synthetase 3163 63.00 0 3373867..3374412 + 181 150398391 - Smed_3199 - hypothetical protein 3164 62.50 0 3374425..3375456 + 343 150398392 holA Smed_3200 - DNA polymerase III subunit delta 3165 60.83 0 3375491..3376381 - 296 150398393 - Smed_3201 - parB-like partition protein 3166 56.48 -1 3376414..3377208 - 264 150398394 - Smed_3202 - cobyrinic acid ac-diamide synthase 3167 54.67 -2 3377223..3377864 - 213 150398395 gidB Smed_3203 - glucose-inhibited division protein B 3168 58.60 -1 3377873..3379744 - 623 150398396 - Smed_3204 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 3169 60.24 0 3379862..3381184 - 440 150398397 trmE Smed_3205 - tRNA modification GTPase TrmE 3170 58.29 -1 3381576..3382841 - 421 150398398 rho Smed_3206 - transcription termination factor Rho 3171 57.83 -1 3383037..3383579 - 180 150398399 - Smed_3207 - hypothetical protein 3172 63.57 0 3383576..3384607 - 343 150398400 hemE Smed_3208 - uroporphyrinogen decarboxylase 3173 62.04 0 3385013..3385834 + 273 150398401 - Smed_3209 - hypothetical protein 3174 62.17 0 3385891..3386490 + 199 150398402 - Smed_3210 - Maf-like protein 3175 62.60 0 3386483..3387343 + 286 150398403 aroE Smed_3211 - shikimate 5-dehydrogenase 61.69 MEAN 2.82 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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