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Sinorhizobium medicae WSM419, complete genome - 1..3781904 3529 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2980 56.69 -1 3161588..3162088 + 166 150398208 - Smed_3013 - iojap-like protein 2981 67.29 +1 3162247..3162729 + 160 150398209 - Smed_3014 - SPOUT methyltransferase superfamily protein 2982 63.81 0 3162955..3164391 + 478 150398210 - Smed_3015 - peptidase M23B 2983 63.34 0 3164381..3165703 + 440 150398211 - Smed_3016 - carboxyl-terminal protease 2984 65.50 +1 3165866..3167065 + 399 150398212 - Smed_3017 - protein of unknown function DUF610 YibQ 2985 62.69 0 3167408..3167935 + 175 150398213 - Smed_3018 - dinucleoside polyphosphate hydrolase 2986 57.41 -1 3168076..3168561 - 161 150398214 - Smed_3019 - bacterioferritin 2987 53.21 -2 3168527..3168838 - 103 150398215 - Smed_3020 - hypothetical protein 2988 61.68 0 3169083..3172433 - 1116 150398216 - Smed_3021 - DNA polymerase III, alpha subunit 2989 66.03 +1 3172430..3173845 - 471 150398217 - Smed_3022 - hypothetical protein 2990 64.99 +1 3173886..3174842 - 318 150398218 - Smed_3023 - hypothetical protein 2991 59.54 0 3175010..3175444 + 144 150398219 - Smed_3024 - hypothetical protein 2992 57.97 -1 3175633..3175839 - 68 150398220 - Smed_3025 - hypothetical protein 2993 64.24 0 3175836..3176741 - 301 150398221 - Smed_3026 - citrate (pro-3S)-lyase 2994 67.84 +2 3176884..3177138 + 84 150398222 - Smed_3027 - hypothetical protein 2995 60.07 0 3177289..3177894 + 201 150398223 leuD Smed_3028 - isopropylmalate isomerase small subunit 2996 60.63 0 3177903..3178283 + 126 150398224 - Smed_3029 - endoribonuclease L-PSP 2997 58.33 -1 3178464..3179435 + 323 150398225 - Smed_3030 - homoserine O-succinyltransferase 2998 61.95 0 3179518..3180534 + 338 150398226 - Smed_3031 - aldose 1-epimerase 2999 60.19 0 3181778..3182533 - 251 150398227 - Smed_3033 - short-chain dehydrogenase/reductase SDR 3000 61.09 0 3182547..3183317 - 256 150398228 - Smed_3034 - short-chain dehydrogenase/reductase SDR 3001 63.62 0 3183314..3184822 - 502 150398229 - Smed_3035 - carbohydrate kinase FGGY 3002 58.93 0 3184858..3185193 - 111 150398230 - Smed_3036 - alkylhydroperoxidase 3003 63.93 0 3185190..3186503 - 437 150398231 - Smed_3037 - branched-chain alpha-keto acid dehydrogenase subunit E2 3004 61.66 0 3186500..3187477 - 325 150398232 - Smed_3038 - transketolase central region 3005 62.29 0 3187474..3188502 - 342 150398233 - Smed_3039 - dehydrogenase E1 component 3006 61.51 0 3188487..3189533 - 348 150398234 - Smed_3040 - monosaccharide-transporting ATPase 3007 62.79 0 3189530..3191077 - 515 150398235 - Smed_3041 - ABC transporter related 3008 60.97 0 3191144..3192091 - 315 150398236 - Smed_3042 - ABC-type sugar transport system periplasmic component-like protein 3009 61.45 0 3192219..3193196 + 325 150398237 - Smed_3043 - DeoR family transcriptional regulator 3010 57.84 -1 3193751..3194260 + 169 150398238 - Smed_3044 - YbaK/prolyl-tRNA synthetase associated region 3011 64.95 +1 3194321..3195313 + 330 150398239 - Smed_3045 - thioredoxin 3012 64.02 0 3195455..3196135 + 226 150398240 - Smed_3046 - peptidase S16 lon domain-containing protein 3013 60.32 0 3196143..3196331 + 62 150398241 - Smed_3047 - hypothetical protein 3014 65.10 +1 3196379..3197593 - 404 150398242 - Smed_3048 - 2-octaprenyl-6-methoxyphenyl hydroxylase 3015 63.95 0 3197678..3198562 + 294 150398243 - Smed_3049 - acyl-CoA thioesterase II 3016 59.00 0 3198799..3199137 + 112 150398244 - Smed_3050 - nitrogen regulatory protein P-II 3017 62.24 0 3199165..3200520 + 451 150398245 - Smed_3051 - ammonium transporter 3018 63.86 0 3200862..3203534 + 890 150398246 - Smed_3052 - cell divisionFtsK/SpoIIIE 3019 60.48 0 3203650..3204312 + 220 150398247 - Smed_3053 - outer membrane lipoprotein carrier protein LolA 3020 61.21 0 3204509..3205315 + 268 150398248 - Smed_3054 - exodeoxyribonuclease III 3021 64.91 +1 3205348..3205803 - 151 150398249 - Smed_3055 - cyclic nucleotide-binding protein 3022 58.40 -1 3205841..3206602 - 253 150398250 - Smed_3056 - two component transcriptional regulator 3023 65.39 +1 3206770..3207318 + 182 150398251 - Smed_3057 - hypothetical protein 3024 65.95 +1 3207399..3207956 - 185 150398252 - Smed_3058 - putative phosphohistidine phosphatase, SixA 3025 62.84 0 3208066..3209475 - 469 150398253 - Smed_3059 - isopropylmalate isomerase large subunit 3026 55.56 -2 3209553..3209705 - 50 150398254 - Smed_3060 - hypothetical protein 3027 62.50 0 3209812..3210291 + 159 150398255 - Smed_3061 - MarR family transcriptional regulator 3028 64.16 0 3210288..3211526 + 412 150398256 - Smed_3062 - Bcr/CflA subfamily drug resistance transporter 3029 60.67 0 3211578..3212795 - 405 150398257 - Smed_3063 - argininosuccinate synthase 3030 61.68 0 3212963..3213604 + 213 150398258 - Smed_3064 - lysine exporter protein LysE/YggA 3031 64.53 +1 3213677..3214471 - 264 150398259 - Smed_3065 - ABC transporter related 3032 62.91 0 3214468..3215346 - 292 150398260 - Smed_3066 - inner-membrane translocator 3033 64.57 +1 3215539..3216492 - 317 150398261 - Smed_3067 - hypothetical protein 3034 61.67 0 3216694..3217935 - 413 150398262 - Smed_3068 - radical SAM protein 3035 57.74 -1 3218214..3218717 - 167 150398263 - Smed_3069 - putative signal peptide protein 3036 62.43 0 3219069..3219446 - 125 150398264 - Smed_3070 - hypothetical protein 3037 59.12 0 3219550..3219867 - 105 150398265 phhB Smed_3071 - pterin-4-alpha-carbinolamine dehydratase 3038 60.88 0 3220102..3220689 - 195 150398266 - Smed_3072 - 2'-5' RNA ligase 3039 59.81 0 3220815..3221456 - 213 150398267 - Smed_3073 - GDSL family lipase 3040 65.83 +1 3221528..3222247 + 239 150398268 - Smed_3074 - ABC transporter related 3041 64.24 0 3222244..3224835 + 863 150398269 - Smed_3075 - hypothetical protein 3042 58.67 -1 3225083..3225820 + 245 150398270 - Smed_3076 - hypothetical protein 3043 63.80 0 3225916..3226473 + 185 150398271 - Smed_3077 - GCN5-related N-acetyltransferase 3044 56.47 -1 3226503..3227120 - 205 150398272 clpP Smed_3078 - ATP-dependent Clp protease proteolytic subunit 3045 59.54 0 3227156..3227506 - 116 150398273 - Smed_3079 - hypothetical protein 3046 60.32 0 3227503..3227817 - 104 150398274 - Smed_3080 - regulatory protein ArsR 3047 57.66 -1 3228016..3228426 - 136 150398275 - Smed_3081 - hypothetical protein 3048 61.72 0 3228754..3229542 - 262 150398276 - Smed_3082 - hypothetical protein 3049 62.10 0 3229730..3232420 - 896 150398277 - Smed_3083 - aconitate hydratase 3050 64.90 +1 3232691..3233314 + 207 150398278 - Smed_3084 - cytochrome c biogenesis protein CcmA 3051 64.55 +1 3233311..3233970 + 219 150398279 - Smed_3085 - heme exporter protein CcmB 3052 64.07 0 3234027..3234797 + 256 150398280 - Smed_3086 - heme exporter protein CcmC 3053 67.23 +1 3234794..3234970 + 58 150398281 - Smed_3087 - Heme exporter protein D (CcmD) 3054 63.17 0 3234967..3235566 + 199 150398282 - Smed_3088 - periplasmic protein thiol--disulphide oxidoreductase DsbE 3055 59.90 0 3235570..3236160 - 196 150398283 - Smed_3089 - hypothetical protein 3056 60.82 0 3236157..3236789 - 210 150398284 - Smed_3090 - intracellular septation protein A 3057 64.56 +1 3236887..3238449 - 520 150398285 - Smed_3091 - signal recognition particle-docking protein FtsY 3058 64.08 0 3238468..3239742 - 424 150398286 - Smed_3092 - MiaB-like tRNA modifying enzyme 3059 64.62 +1 3239739..3240617 - 292 150398287 dapF Smed_3093 - diaminopimelate epimerase 3060 63.41 0 3240738..3241751 - 337 150398288 - Smed_3094 - hypothetical protein 3061 64.92 +1 3242073..3243617 + 514 150398289 - Smed_3095 - signal recognition particle protein 3062 58.63 -1 3243630..3243965 + 111 150398290 - Smed_3096 - chorismate mutase 3063 65.07 +1 3244004..3244378 + 124 150398291 rpsP Smed_3097 - 30S ribosomal protein S16 3064 59.90 0 3244455..3245075 + 206 150398292 rimM Smed_3098 - 16S rRNA-processing protein 3065 65.56 +1 3245086..3245808 + 240 150398293 trmD Smed_3099 - tRNA (guanine-N(1)-)-methyltransferase 3066 64.79 +1 3245790..3246536 - 248 150398294 - Smed_3100 - hypothetical protein 3067 62.73 0 3246849..3247382 + 177 150398295 rplS Smed_3101 - 50S ribosomal protein L19 3068 60.74 0 3247507..3248316 + 269 150398296 - Smed_3102 - extracellular solute-binding protein 3069 61.70 0 3248385..3249209 + 274 150398297 - Smed_3103 - polar amino acid ABC transporter, inner membrane subunit 3070 63.44 0 3249478..3251304 - 608 150398298 - Smed_3104 - ABC transporter related 3071 64.86 +1 3251309..3251971 - 220 150398299 - Smed_3105 - thiamine pyrophosphokinase 3072 67.70 +2 3252036..3252521 - 161 150398300 - Smed_3106 - hypothetical protein 3073 61.22 0 3252828..3253856 + 342 150398301 tbpA Smed_3107 - thiamine transporter substrate binding subunit 3074 65.35 +1 3253909..3255504 + 531 150398302 thiP Smed_3108 - thiamine transporter membrane protein 3075 64.41 0 3255501..3256208 + 235 150398303 - Smed_3109 - ABC transporter ATP-binding protein 3076 63.89 0 3256627..3258138 + 503 150398304 - Smed_3110 - peptidase M48 Ste24p 3077 63.78 0 3258437..3259303 - 288 150398305 rpoH2 Smed_3111 - RNA polymerase factor sigma-32 3078 58.60 -1 3259740..3260309 - 189 150398306 - Smed_3112 - CarD family transcriptional regulator 3079 56.34 -1 3260717..3261055 - 112 150398307 - Smed_3113 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 61.69 MEAN 2.82 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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