version 1.0
Sinorhizobium medicae WSM419, complete genome - 1..3781904 3529 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2857 63.74 0 3023390..3025303 + 637 150398085 - Smed_2887 - surface antigen (D15) 2858 64.92 +1 3025440..3031049 + 1869 150398086 - Smed_2888 - hypothetical protein 2859 65.42 +1 3031174..3031653 - 159 150398087 - Smed_2889 - glyoxalase/bleomycin resistance protein/dioxygenase 2860 62.07 0 3031856..3032290 - 144 150398088 - Smed_2890 - AsnC family transcriptional regulator 2861 64.07 0 3032444..3033367 + 307 150398089 - Smed_2891 - arginase 2862 60.00 0 3033587..3034066 + 159 150398090 - Smed_2892 - putative CheW protein 2863 62.54 0 3034164..3035933 + 589 150398091 - Smed_2893 - methyl-accepting chemotaxis sensory transducer 2864 60.02 0 3036010..3036942 - 310 150398092 - Smed_2894 - transposase IS116/IS110/IS902 family protein 2865 57.58 -1 3037230..3037460 - 76 150398093 - Smed_2895 - putative NAD-dependent formate dehydrogenase delta subunit protein 2866 66.34 +1 3037478..3038386 - 302 150398094 - Smed_2896 - formate dehydrogenase accessory protein 2867 63.54 0 3038395..3041274 - 959 150398095 - Smed_2897 - formate dehydrogenase, alpha subunit 2868 63.84 0 3041357..3042913 - 518 150398096 - Smed_2898 - NADH dehydrogenase (quinone) 2869 64.79 +1 3042910..3043389 - 159 150398097 - Smed_2899 - formate dehydrogenase subunit gamma 2870 59.31 0 3043566..3044462 - 298 150398098 - Smed_2900 - LysR family transcriptional regulator 2871 63.81 0 3044552..3045322 - 256 150398099 - Smed_2901 - short-chain dehydrogenase/reductase SDR 2872 58.30 -1 3045500..3046264 + 254 150398100 - Smed_2902 - DeoR family transcriptional regulator 2873 62.30 0 3046392..3047903 + 503 150398101 glpD Smed_2903 - glycerol-3-phosphate dehydrogenase 2874 62.75 0 3047945..3049015 + 356 150398102 - Smed_2904 - ABC transporter related 2875 61.62 0 3049038..3050108 + 356 150398103 - Smed_2905 - ABC transporter related 2876 58.82 -1 3050110..3050976 + 288 150398104 - Smed_2906 - binding-protein-dependent transport systems inner membrane component 2877 60.00 0 3050997..3051821 + 274 150398105 - Smed_2907 - binding-protein-dependent transport systems inner membrane component 2878 65.48 +1 3051835..3052254 + 139 150398106 - Smed_2908 - hypothetical protein 2879 60.70 0 3052335..3054059 + 574 150398107 - Smed_2909 - extracellular solute-binding protein 2880 62.76 0 3055977..3057461 + 494 150398108 - Smed_2911 - uracil-xanthine permease 2881 62.91 0 3057589..3058494 + 301 150398109 - Smed_2912 - hypothetical protein 2882 61.77 0 3058500..3058928 - 142 150398110 - Smed_2913 - ferric uptake regulator family protein 2883 59.93 0 3059050..3059955 + 301 150398111 - Smed_2914 - periplasmic solute binding protein 2884 63.25 0 3059952..3060887 + 311 150398112 - Smed_2915 - ABC transporter related 2885 60.84 0 3060884..3061741 + 285 150398113 - Smed_2916 - ABC-3 protein 2886 62.00 0 3061738..3062595 + 285 150398114 - Smed_2917 - ABC-3 protein 2887 63.24 0 3062723..3063568 + 281 150398115 - Smed_2918 - hypothetical protein 2888 63.01 0 3063580..3064044 - 154 150398116 - Smed_2919 - AsnC family transcriptional regulator 2889 61.41 0 3064138..3065241 + 367 150398117 - Smed_2920 - saccharopine dehydrogenase 2890 63.46 0 3065506..3065910 - 134 150398118 atpC Smed_2921 - F0F1 ATP synthase subunit epsilon 2891 62.75 0 3066033..3067562 - 509 150398119 - Smed_2922 - F0F1 ATP synthase subunit beta 2892 60.84 0 3067587..3068462 - 291 150398120 - Smed_2923 - F0F1 ATP synthase subunit gamma 2893 62.09 0 3068490..3070019 - 509 150398121 - Smed_2924 - F0F1 ATP synthase subunit alpha 2894 60.14 0 3070019..3070585 - 188 150398122 - Smed_2925 - F0F1 ATP synthase subunit delta 2895 64.60 +1 3070823..3071209 - 128 150398123 - Smed_2926 - hypothetical protein 2896 67.44 +2 3071332..3073536 - 734 150398124 - Smed_2927 - primosome assembly protein PriA 2897 62.39 0 3073712..3074365 + 217 150398125 - Smed_2928 - putative translaldolase 2898 59.17 0 3074440..3075906 - 488 150398126 - Smed_2929 - hypothetical protein 2899 56.18 -1 3076102..3077169 + 355 150398127 - Smed_2930 - hypothetical protein 2900 64.32 0 3077230..3078378 - 382 150398128 - Smed_2931 - hypothetical protein 2901 61.53 0 3078445..3079359 - 304 150398129 - Smed_2932 - phospholipid/glycerol acyltransferase 2902 65.29 +1 3079559..3080500 + 313 150398130 xerC Smed_2933 - site-specific tyrosine recombinase XerC 2903 62.45 0 3080586..3081677 + 363 150398131 - Smed_2934 - GumN family protein 2904 65.86 +1 3081661..3082155 - 164 150398132 - Smed_2935 - hypothetical protein 2905 63.04 0 3082285..3083691 - 468 150398133 - Smed_2936 - dihydrolipoamide dehydrogenase 2906 66.93 +1 3083742..3084494 - 250 150398134 - Smed_2937 - short-chain dehydrogenase/reductase SDR 2907 64.67 +1 3084491..3084991 - 166 150398135 - Smed_2938 - putative signal peptide protein 2908 59.53 0 3084991..3085635 - 214 150398136 - Smed_2939 - lysine exporter protein LysE/YggA 2909 64.26 0 3085800..3087047 - 415 150398137 - Smed_2940 - dihydrolipoamide acetyltransferase 2910 62.10 0 3087097..3090093 - 998 150398138 kgd Smed_2941 - alpha-ketoglutarate decarboxylase 2911 63.90 0 3090374..3091276 - 300 150398139 - Smed_2942 - succinyl-CoA synthetase subunit alpha 2912 61.15 0 3091283..3092479 - 398 150398140 sucC Smed_2943 - succinyl-CoA synthetase subunit beta 2913 62.62 0 3092513..3093475 - 320 150398141 - Smed_2944 - malate dehydrogenase 2914 63.90 0 3093659..3094888 - 409 150398142 - Smed_2945 - AFG1 family ATPase 2915 68.89 +2 3094931..3095470 - 179 150398143 - Smed_2946 - outer membrane lipoprotein omp19 2916 63.77 0 3095639..3096709 - 356 150398144 - Smed_2947 - ABC transporter related 2917 58.89 0 3096750..3097598 - 282 150398145 - Smed_2948 - binding-protein-dependent transport systems inner membrane component 2918 61.72 0 3097591..3098499 - 302 150398146 - Smed_2949 - binding-protein-dependent transport systems inner membrane component 2919 61.85 0 3098606..3099913 - 435 150398147 - Smed_2950 - extracellular solute-binding protein 2920 64.76 +1 3100121..3101326 + 401 150398148 - Smed_2951 - ROK family protein 2921 63.94 0 3101367..3102467 + 366 150398149 - Smed_2952 - oxidoreductase domain-containing protein 2922 60.28 0 3102488..3103129 + 213 150398150 - Smed_2953 - hypothetical protein 2923 59.93 0 3103290..3103556 - 88 150398151 - Smed_2954 - hypothetical protein 2924 64.66 +1 3103659..3104255 - 198 150398152 - Smed_2955 - peptide methionine sulfoxide reductase 2925 60.13 0 3104405..3105184 - 259 150398153 sdhB Smed_2956 - succinate dehydrogenase iron-sulfur subunit 2926 64.17 0 3105203..3107044 - 613 150398154 sdhA Smed_2957 - succinate dehydrogenase flavoprotein subunit 2927 58.53 -1 3107052..3107432 - 126 150398155 - Smed_2958 - succinate dehydrogenase hydrophobic membrane anchor 2928 57.76 -1 3107444..3107836 - 130 150398156 - Smed_2959 - succinate dehydrogenase cytochrome b556 subunit 2929 62.96 0 3108137..3108757 + 206 150398157 - Smed_2960 - hypothetical protein 2930 64.99 +1 3108787..3109443 - 218 150398158 - Smed_2961 - hypothetical protein 2931 60.42 0 3109457..3109888 - 143 150398159 - Smed_2962 - hypothetical protein 2932 61.56 0 3109895..3110188 - 97 150398160 - Smed_2963 - YciI-like protein 2933 66.47 +1 3110205..3111200 - 331 150398161 - Smed_2964 - glycerol-3-phosphate dehydrogenase (NAD(P)(+)) 2934 66.94 +1 3111205..3112287 - 360 150398162 - Smed_2965 - O-sialoglycoprotein endopeptidase 2935 64.95 +1 3112412..3113404 + 330 150398163 hemC Smed_2966 - porphobilinogen deaminase 2936 66.95 +1 3113520..3114236 + 238 150398164 - Smed_2967 - uroporphyrinogen-III synthase 2937 66.45 +1 3114373..3115761 + 462 150398165 - Smed_2968 - hypothetical protein 2938 65.34 +1 3115874..3117529 + 551 150398166 - Smed_2969 - HemY domain-containing protein 2939 59.17 0 3117555..3118034 + 159 150398167 - Smed_2970 - hypothetical protein 2940 61.85 0 3118037..3118783 + 248 150398168 - Smed_2971 - glutamine amidotransferase 2941 63.62 0 3118942..3120189 - 415 150398169 - Smed_2972 - major facilitator transporter 2942 55.25 -2 3120393..3120716 + 107 150398170 - Smed_2973 - protein of unknown function YGGT 2943 56.33 -1 3120881..3121480 - 199 150398171 - Smed_2974 - inorganic pyrophosphatase 2944 61.93 0 3121893..3122399 - 168 150398172 - Smed_2975 - GCN5-related N-acetyltransferase 2945 61.69 0 3122613..3124439 - 608 150398173 - Smed_2976 - GTP-binding protein TypA 2946 63.98 0 3124575..3126137 - 520 150398174 - Smed_2977 - alkaline phosphatase 2947 60.58 0 3126291..3126980 - 229 150398175 - Smed_2978 - GntR domain-containing protein 2948 60.28 0 3127146..3127943 + 265 150398176 - Smed_2979 - extracellular solute-binding protein 2949 59.52 0 3128048..3128719 + 223 150398177 - Smed_2980 - polar amino acid ABC transporter, inner membrane subunit 2950 59.89 0 3128719..3129456 + 245 150398178 - Smed_2981 - ABC transporter related 2951 60.49 0 3129485..3130762 + 425 150398179 - Smed_2982 - cysteine desulfurase family protein 2952 61.58 0 3130780..3132213 + 477 150398180 - Smed_2983 - dihydropyrimidinase 2953 67.97 +2 3132426..3133733 + 435 150398181 - Smed_2984 - amidase 2954 58.02 -1 3133738..3133899 - 53 150398182 - Smed_2985 - hypothetical protein 2955 67.06 +1 3134179..3134685 + 168 150398183 - Smed_2986 - hypothetical protein 2956 59.97 0 3134784..3135440 - 218 150398184 - Smed_2987 - hypothetical protein 61.69 MEAN 2.82 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0