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Sinorhizobium medicae WSM419, complete genome - 1..3781904 3529 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2804 62.96 0 2959713..2960171 + 152 150398032 - Smed_2834 - MarR family transcriptional regulator 2805 61.08 0 2960158..2960676 - 172 150398033 - Smed_2835 - AsnC family transcriptional regulator 2806 59.39 0 2960806..2961918 + 370 150398034 - Smed_2836 - 4-hydroxyphenylpyruvate dioxygenase 2807 57.79 -1 2961997..2962785 - 262 150398035 - Smed_2837 - response regulator receiver protein 2808 56.70 -1 2963705..2964226 + 173 150398036 - Smed_2838 - hypothetical protein 2809 56.97 -1 2964420..2964914 + 164 150398037 - Smed_2839 - hypothetical protein 2810 60.33 0 2965056..2966318 + 420 150398038 - Smed_2840 - tetratricopeptide TPR_4 2811 55.36 -2 2966343..2967386 - 347 150398039 - Smed_2841 - hypothetical protein 2812 59.21 0 2967709..2969694 + 661 150398040 - Smed_2842 - diguanylate cyclase/phosphodiesterase 2813 60.93 0 2969759..2970490 - 243 150398041 - Smed_2843 - GntR family transcriptional regulator 2814 61.14 0 2970719..2971732 + 337 150398042 - Smed_2844 - sugar isomerase (SIS) 2815 65.07 +1 2971817..2972629 + 270 150398043 - Smed_2845 - ribokinase-like domain-containing protein 2816 62.04 0 2972988..2973743 - 251 150398044 - Smed_2846 - ABC transporter related 2817 65.31 +1 2973759..2974640 - 293 150398045 - Smed_2847 - hypothetical protein 2818 59.05 0 2974630..2975601 - 323 150398046 - Smed_2848 - polar amino acid ABC transporter, inner membrane subunit 2819 62.53 0 2975619..2976899 - 426 150398047 - Smed_2849 - FAD dependent oxidoreductase 2820 60.75 0 2976966..2977793 - 275 150398048 - Smed_2850 - extracellular solute-binding protein 2821 61.62 0 2978142..2979092 - 316 150398049 - Smed_2851 - xylose isomerase domain-containing protein 2822 61.98 0 2979125..2979892 - 255 150398050 - Smed_2852 - glycerophosphoryl diester phosphodiesterase 2823 63.15 0 2979899..2980780 - 293 150398051 - Smed_2853 - binding-protein-dependent transport systems inner membrane component 2824 62.24 0 2980900..2981826 - 308 150398052 - Smed_2854 - binding-protein-dependent transport systems inner membrane component 2825 65.37 +1 2981823..2982821 - 332 150398053 - Smed_2855 - oligopeptide/dipeptide ABC transporter, ATPase subunit 2826 64.11 0 2982818..2983834 - 338 150398054 - Smed_2856 - oligopeptide/dipeptide ABC transporter, ATPase subunit 2827 62.12 0 2983926..2985554 - 542 150398055 - Smed_2857 - extracellular solute-binding protein 2828 61.52 0 2985871..2986803 + 310 150398056 - Smed_2858 - DeoR family transcriptional regulator 2829 55.72 -2 2986873..2987283 - 136 150398057 - Smed_2859 - PilT domain-containing protein 2830 62.90 0 2987370..2988299 - 309 150398058 - Smed_2860 - integrase catalytic region 2831 55.81 -2 2988293..2988559 - 88 150398059 - Smed_2861 - transposase IS3/IS911 family protein 2832 59.55 0 2988713..2988979 - 88 150398060 - Smed_2862 - hypothetical protein 2833 61.39 0 2995617..2996564 - 315 150398061 - Smed_2863 - LysR family transcriptional regulator 2834 60.86 0 2996806..2998011 + 401 150398062 - Smed_2864 - putative periplasmic binding ABC transporter protein 2835 65.14 +1 2998023..2998808 + 261 150398063 - Smed_2865 - ABC transporter related 2836 62.82 0 2998808..2999509 + 233 150398064 - Smed_2866 - ABC transporter related 2837 61.04 0 2999513..3000400 + 295 150398065 - Smed_2867 - inner-membrane translocator 2838 60.02 0 3000402..3001394 + 330 150398066 - Smed_2868 - inner-membrane translocator 2839 63.78 0 3001539..3003134 + 531 150398067 - Smed_2869 - glucose-methanol-choline oxidoreductase 2840 62.98 0 3003180..3006953 - 1257 150398068 metH Smed_2870 - B12-dependent methionine synthase 2841 64.66 +1 3007133..3008281 - 382 150398069 - Smed_2871 - mannose-6-phosphate isomerase 2842 61.41 0 3008298..3008792 - 164 150398070 - Smed_2872 - hypothetical protein 2843 63.21 0 3008857..3009753 - 298 150398071 - Smed_2873 - ROK family protein 2844 56.52 -1 3010234..3010440 - 68 150398072 - Smed_2874 - cold-shock DNA-binding domain-containing protein 2845 58.78 -1 3010605..3010883 - 92 150398073 - Smed_2875 - hypothetical protein 2846 55.28 -2 3011121..3011489 + 122 150398074 - Smed_2876 - PRC-barrel domain-containing protein 2847 56.41 -1 3011621..3011815 - 64 150398075 - Smed_2877 - putative transmembrane protein 2848 61.71 0 3011926..3012651 - 241 150398076 - Smed_2878 - protein of unknown function DUF306 Meta and HslJ 2849 65.48 +1 3012811..3013986 + 391 150398077 - Smed_2879 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase 2850 61.34 0 3014115..3015335 - 406 150398078 - Smed_2880 - 5-aminolevulinate synthase 2851 63.41 0 3015678..3016475 - 265 150398079 - Smed_2881 - carbon-monoxide dehydrogenase (acceptor) 2852 62.92 0 3016491..3018836 - 781 150398080 - Smed_2882 - aldehyde oxidase and xanthine dehydrogenase molybdopterin binding 2853 63.19 0 3018936..3019424 - 162 150398081 - Smed_2883 - 2Fe-2S iron-sulfur cluster binding domain-containing protein 2854 61.80 0 3019690..3020100 + 136 150398082 - Smed_2884 - 17 kDa surface antigen 2855 60.84 0 3020272..3022038 - 588 150398083 - Smed_2885 - adenylyl cyclase class-3/4/guanylyl cyclase 2856 60.60 0 3022256..3023128 + 290 150398084 - Smed_2886 - alpha/beta hydrolase fold 2857 63.74 0 3023390..3025303 + 637 150398085 - Smed_2887 - surface antigen (D15) 2858 64.92 +1 3025440..3031049 + 1869 150398086 - Smed_2888 - hypothetical protein 2859 65.42 +1 3031174..3031653 - 159 150398087 - Smed_2889 - glyoxalase/bleomycin resistance protein/dioxygenase 2860 62.07 0 3031856..3032290 - 144 150398088 - Smed_2890 - AsnC family transcriptional regulator 2861 64.07 0 3032444..3033367 + 307 150398089 - Smed_2891 - arginase 2862 60.00 0 3033587..3034066 + 159 150398090 - Smed_2892 - putative CheW protein 2863 62.54 0 3034164..3035933 + 589 150398091 - Smed_2893 - methyl-accepting chemotaxis sensory transducer 2864 60.02 0 3036010..3036942 - 310 150398092 - Smed_2894 - transposase IS116/IS110/IS902 family protein 2865 57.58 -1 3037230..3037460 - 76 150398093 - Smed_2895 - putative NAD-dependent formate dehydrogenase delta subunit protein 2866 66.34 +1 3037478..3038386 - 302 150398094 - Smed_2896 - formate dehydrogenase accessory protein 2867 63.54 0 3038395..3041274 - 959 150398095 - Smed_2897 - formate dehydrogenase, alpha subunit 2868 63.84 0 3041357..3042913 - 518 150398096 - Smed_2898 - NADH dehydrogenase (quinone) 2869 64.79 +1 3042910..3043389 - 159 150398097 - Smed_2899 - formate dehydrogenase subunit gamma 2870 59.31 0 3043566..3044462 - 298 150398098 - Smed_2900 - LysR family transcriptional regulator 2871 63.81 0 3044552..3045322 - 256 150398099 - Smed_2901 - short-chain dehydrogenase/reductase SDR 2872 58.30 -1 3045500..3046264 + 254 150398100 - Smed_2902 - DeoR family transcriptional regulator 2873 62.30 0 3046392..3047903 + 503 150398101 glpD Smed_2903 - glycerol-3-phosphate dehydrogenase 2874 62.75 0 3047945..3049015 + 356 150398102 - Smed_2904 - ABC transporter related 2875 61.62 0 3049038..3050108 + 356 150398103 - Smed_2905 - ABC transporter related 2876 58.82 -1 3050110..3050976 + 288 150398104 - Smed_2906 - binding-protein-dependent transport systems inner membrane component 2877 60.00 0 3050997..3051821 + 274 150398105 - Smed_2907 - binding-protein-dependent transport systems inner membrane component 2878 65.48 +1 3051835..3052254 + 139 150398106 - Smed_2908 - hypothetical protein 2879 60.70 0 3052335..3054059 + 574 150398107 - Smed_2909 - extracellular solute-binding protein 2880 62.76 0 3055977..3057461 + 494 150398108 - Smed_2911 - uracil-xanthine permease 2881 62.91 0 3057589..3058494 + 301 150398109 - Smed_2912 - hypothetical protein 2882 61.77 0 3058500..3058928 - 142 150398110 - Smed_2913 - ferric uptake regulator family protein 2883 59.93 0 3059050..3059955 + 301 150398111 - Smed_2914 - periplasmic solute binding protein 2884 63.25 0 3059952..3060887 + 311 150398112 - Smed_2915 - ABC transporter related 2885 60.84 0 3060884..3061741 + 285 150398113 - Smed_2916 - ABC-3 protein 2886 62.00 0 3061738..3062595 + 285 150398114 - Smed_2917 - ABC-3 protein 2887 63.24 0 3062723..3063568 + 281 150398115 - Smed_2918 - hypothetical protein 2888 63.01 0 3063580..3064044 - 154 150398116 - Smed_2919 - AsnC family transcriptional regulator 2889 61.41 0 3064138..3065241 + 367 150398117 - Smed_2920 - saccharopine dehydrogenase 2890 63.46 0 3065506..3065910 - 134 150398118 atpC Smed_2921 - F0F1 ATP synthase subunit epsilon 2891 62.75 0 3066033..3067562 - 509 150398119 - Smed_2922 - F0F1 ATP synthase subunit beta 2892 60.84 0 3067587..3068462 - 291 150398120 - Smed_2923 - F0F1 ATP synthase subunit gamma 2893 62.09 0 3068490..3070019 - 509 150398121 - Smed_2924 - F0F1 ATP synthase subunit alpha 2894 60.14 0 3070019..3070585 - 188 150398122 - Smed_2925 - F0F1 ATP synthase subunit delta 2895 64.60 +1 3070823..3071209 - 128 150398123 - Smed_2926 - hypothetical protein 2896 67.44 +2 3071332..3073536 - 734 150398124 - Smed_2927 - primosome assembly protein PriA 2897 62.39 0 3073712..3074365 + 217 150398125 - Smed_2928 - putative translaldolase 2898 59.17 0 3074440..3075906 - 488 150398126 - Smed_2929 - hypothetical protein 2899 56.18 -1 3076102..3077169 + 355 150398127 - Smed_2930 - hypothetical protein 2900 64.32 0 3077230..3078378 - 382 150398128 - Smed_2931 - hypothetical protein 2901 61.53 0 3078445..3079359 - 304 150398129 - Smed_2932 - phospholipid/glycerol acyltransferase 2902 65.29 +1 3079559..3080500 + 313 150398130 xerC Smed_2933 - site-specific tyrosine recombinase XerC 2903 62.45 0 3080586..3081677 + 363 150398131 - Smed_2934 - GumN family protein 61.69 MEAN 2.82 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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