IslandPathversion 1.0

IslandPath Analysis: Sinorhizobium medicae WSM419



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.69 STD DEV: 2.82
Sinorhizobium medicae WSM419, complete genome - 1..3781904
3529 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2643	 66.38	+1	2775826..2776875	+	349	150397871	-	Smed_2673	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
2644	 57.14	-1	2777079..2777204	+	41	150397872	rpmJ	Smed_2674	-	50S ribosomal protein L36
2645	 61.93	0	2777296..2777907	+	203	150397873	-	Smed_2675	-	TPR repeat-containing protein
2646	 64.24	0	2778092..2779531	-	479	150397874	-	Smed_2676	-	pyruvate kinase
2647	 60.27	0	2779531..2779968	-	145	150397875	-	Smed_2677	-	hypothetical protein
2648	 62.89	0	2780252..2781046	+	264	150397876	-	Smed_2678	-	N-formylglutamate amidohydrolase
2649	 61.11	0	2781066..2781371	+	101	150397877	-	Smed_2679	-	hypothetical protein
2650	 58.97	0	2781476..2781748	+	90	150397878	-	Smed_2680	-	hypothetical protein
2651	 48.39	-2	2782786..2782971	-	61	150397879	-	Smed_2681	-	hypothetical protein
2652	 64.97	+1	2783154..2784980	-	608	150397880	-	Smed_2682	-	hypothetical protein
2653	 62.61	0	2785161..2786810	-	549	150397881	-	Smed_2683	-	two component, sigma54 specific, Fis family transcriptional regulator
2654	 61.94	0	2786895..2788778	+	627	150397882	-	Smed_2684	-	pepF/M3 family oligoendopeptidase
2655	 64.34	0	2788831..2789988	+	385	150397883	-	Smed_2685	-	para-aminobenzoate synthase component I
2656	 66.35	+1	2789985..2790611	+	208	150397884	-	Smed_2686	-	hypothetical protein
2657	 61.20	0	2790576..2791526	-	316	150397885	-	Smed_2687	-	diguanylate cyclase
2658	 61.57	0	2791932..2793383	+	483	150397886	-	Smed_2688	-	homospermidine synthase
2659	 60.70	0	2793693..2794061	+	122	150397887	-	Smed_2689	-	putative outer membrane lipoprotein
2660	 62.79	0	2794291..2796174	+	627	150397888	-	Smed_2690	-	5'-nucleotidase domain-containing protein
2661	 60.98	0	2796292..2797329	+	345	150397889	hemH	Smed_2691	-	ferrochelatase
2662	 66.37	+1	2797393..2798409	-	338	150397890	-	Smed_2692	-	NAD-dependent glycerol-3-phosphate dehydrogenase domain-containing protein
2663	 62.08	0	2798446..2800494	-	682	150397891	-	Smed_2693	-	short chain dehydrogenase
2664	 62.72	0	2800573..2801637	-	354	150397892	-	Smed_2694	-	ABC transporter related
2665	 63.22	0	2801697..2802422	-	241	150397893	-	Smed_2695	-	short-chain dehydrogenase/reductase SDR
2666	 61.99	0	2802494..2803990	-	498	150397894	-	Smed_2696	-	extracellular solute-binding protein
2667	 61.56	0	2804060..2804941	-	293	150397895	-	Smed_2697	-	binding-protein-dependent transport systems inner membrane component
2668	 61.15	0	2804943..2805830	-	295	150397896	-	Smed_2698	-	binding-protein-dependent transport systems inner membrane component
2669	 64.26	0	2805966..2807501	-	511	150397897	glpD	Smed_2699	-	glycerol-3-phosphate dehydrogenase
2670	 64.33	0	2807498..2808310	-	270	150397898	-	Smed_2700	-	HAD family hydrolase
2671	 64.09	0	2808315..2809670	-	451	150397899	-	Smed_2701	-	3-dehydroquinate synthase
2672	 62.28	0	2809744..2810769	+	341	150397900	-	Smed_2702	-	DeoR family transcriptional regulator
2673	 65.39	+1	2810824..2812389	+	521	150397901	-	Smed_2703	-	carbohydrate kinase FGGY
2674	 61.26	0	2812499..2813497	+	332	150397902	-	Smed_2704	-	band 7 protein
2675	 67.54	+2	2813494..2813949	+	151	150397903	-	Smed_2705	-	hypothetical protein
2676	 65.03	+1	2814057..2815460	+	467	150397904	-	Smed_2706	-	hypothetical protein
2677	 61.49	0	2815524..2816411	-	295	150397905	-	Smed_2707	-	UTP-glucose-1-phosphate uridylyltransferase
2678	 60.43	0	2816713..2817930	+	405	150397906	-	Smed_2708	-	lytic murein transglycosylase
2679	 62.83	0	2818041..2819291	+	416	150397907	-	Smed_2709	-	hypothetical protein
2680	 63.37	0	2819477..2820934	-	485	150397908	gltD	Smed_2710	-	glutamate synthase subunit beta
2681	 62.90	0	2821036..2825760	-	1574	150397909	-	Smed_2711	-	glutamate synthase (ferredoxin)
2682	 64.37	0	2826338..2827384	+	348	150397910	-	Smed_2712	-	threonine aldolase
2683	 63.95	0	2827417..2828262	-	281	150397911	-	Smed_2713	-	LysR family transcriptional regulator
2684	 62.95	0	2828354..2829349	+	331	150397912	-	Smed_2714	-	bile acid:sodium symporter
2685	 58.23	-1	2829411..2829872	-	153	150397913	-	Smed_2715	-	heat shock protein Hsp20
2686	 64.10	0	2830247..2831260	+	337	150397914	-	Smed_2716	-	alpha/beta hydrolase fold
2687	 62.86	0	2831287..2832153	-	288	150397915	-	Smed_2717	-	histidinol-phosphate phosphatase, putative
2688	 62.24	0	2832368..2833249	-	293	150397916	-	Smed_2718	-	N-formylglutamate amidohydrolase
2689	 58.40	-1	2833438..2833800	+	120	150397917	-	Smed_2719	-	response regulator receiver protein
2690	 60.42	0	2834218..2834457	-	79	150397918	-	Smed_2720	-	HicB family protein
2691	 60.72	0	2835011..2835397	+	128	150397919	-	Smed_2721	-	Sel1 domain-containing protein
2692	 61.82	0	2835699..2835863	+	54	150397920	-	Smed_2722	-	hypothetical protein
2693	 64.17	0	2835974..2837812	+	612	150397921	-	Smed_2723	-	dihydroxy-acid dehydratase
2694	 57.78	-1	2837880..2838284	-	134	150397922	-	Smed_2724	-	glutathione-dependent formaldehyde-activating GFA
2695	 63.25	0	2838386..2838853	+	155	150397923	-	Smed_2725	-	MarR family transcriptional regulator
2696	 58.11	-1	2839003..2839446	-	147	150397924	-	Smed_2726	-	pseudoazurin
2697	 61.99	0	2839490..2839831	-	113	150397925	-	Smed_2727	-	putative cytochrome c protein
2698	 61.38	0	2839910..2841139	-	409	150397926	-	Smed_2728	-	oxidoreductase molybdopterin binding
2699	 65.49	+1	2841299..2842060	-	253	150397927	-	Smed_2729	-	putative transmembrane anti-sigma factor
2700	 63.24	0	2842057..2842581	-	174	150397928	-	Smed_2730	-	ECF subfamily RNA polymerase sigma-24 factor
2701	 65.32	+1	2842761..2843207	-	148	150397929	-	Smed_2731	-	MarR family transcriptional regulator
2702	 58.65	-1	2843353..2843826	+	157	150397930	-	Smed_2732	-	hypothetical protein
2703	 61.55	0	2844055..2844816	+	253	150397931	-	Smed_2733	-	glyoxalase/bleomycin resistance protein/dioxygenase
2704	 66.34	+1	2844864..2845775	-	303	150397932	-	Smed_2734	-	LysR family transcriptional regulator
2705	 63.29	0	2845880..2846914	+	344	150397933	-	Smed_2735	-	aldo/keto reductase
2706	 63.55	0	2847135..2849543	+	802	150397934	-	Smed_2736	-	hypothetical protein
2707	 63.37	0	2849558..2850436	+	292	150397935	-	Smed_2737	-	transglutaminase domain-containing protein
2708	 62.14	0	2850614..2851873	+	419	150397936	-	Smed_2738	-	von Willebrand factor type A
2709	 61.23	0	2852081..2854546	+	821	150397937	-	Smed_2739	-	glycogen/starch/alpha-glucan phosphorylase
2710	 62.10	0	2854543..2856753	+	736	150397938	-	Smed_2740	-	glycogen branching enzyme
2711	 61.27	0	2856865..2858124	+	419	150397939	glgC	Smed_2741	-	glucose-1-phosphate adenylyltransferase
2712	 62.65	0	2858131..2859573	+	480	150397940	glgA	Smed_2742	-	glycogen synthase
2713	 62.12	0	2859579..2861207	+	542	150397941	-	Smed_2743	-	phosphoglucomutase
2714	 63.82	0	2861322..2863286	+	654	150397942	-	Smed_2744	-	glycogen debranching enzyme GlgX
2715	 58.49	-1	2863361..2863849	+	162	150397943	-	Smed_2745	-	dehydratase
2716	 64.89	+1	2863842..2864909	+	355	150397944	-	Smed_2746	-	hypothetical protein
2717	 64.69	+1	2864933..2866144	-	403	150397945	-	Smed_2747	-	alcohol dehydrogenase
2718	 53.27	-2	2866281..2866952	+	223	150397946	-	Smed_2748	-	hypothetical protein
2719	 68.29	+2	2867095..2867649	-	184	150397947	-	Smed_2749	-	sarcosine oxidase gamma subunit family protein
2720	 63.89	0	2867642..2870635	-	997	150397948	-	Smed_2750	-	sarcosine oxidase alpha subunit family protein
2721	 57.02	-1	2870632..2870973	-	113	150397949	-	Smed_2751	-	sarcosine oxidase delta subunit family protein
2722	 62.28	0	2871093..2872346	-	417	150397950	-	Smed_2752	-	sarcosine oxidase beta subunit family protein
2723	 60.65	0	2872653..2872868	+	71	150397951	rpsU	Smed_2753	-	30S ribosomal protein S21
2724	 62.73	0	2873062..2873949	+	295	150397952	-	Smed_2754	-	TPR repeat-containing protein
2725	 62.66	0	2874085..2874558	+	157	150397953	-	Smed_2755	-	hypothetical protein
2726	 60.03	0	2874835..2876055	+	406	150397954	-	Smed_2756	-	putative adenylate/guanylate cyclase
2727	 61.75	0	2876187..2877590	-	467	150397955	-	Smed_2757	-	NAD(P)(+) transhydrogenase (AB-specific)
2728	 62.53	0	2877600..2878010	-	136	150397956	-	Smed_2758	-	putative NAD(P) transhydrogenase subunit alpha PART 2 transmembrane protein
2729	 64.23	0	2878011..2879159	-	382	150397957	-	Smed_2759	-	NAD(P) transhydrogenase subunit alpha
2730	 52.00	-2	2879471..2879695	-	74	150397958	-	Smed_2760	-	aa3 type cytochrome c oxidase subunit IV
2731	 60.12	0	2879906..2882272	-	788	150397959	-	Smed_2761	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
2732	 64.95	+1	2882653..2883408	+	251	150397960	-	Smed_2762	-	peptidase C26
2733	 63.15	0	2883405..2884370	-	321	150397961	-	Smed_2763	-	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
2734	 62.66	0	2884444..2885466	-	340	150397962	-	Smed_2764	-	alanine racemase
2735	 64.29	0	2885558..2886061	-	167	150397963	-	Smed_2765	-	MarR family transcriptional regulator
2736	 63.76	0	2886175..2886966	+	263	150397964	-	Smed_2766	-	creatininase
2737	 60.36	0	2887097..2888206	+	369	150397965	-	Smed_2767	-	cobalamin synthesis protein P47K
2738	 65.96	+1	2888271..2889260	+	329	150397966	-	Smed_2768	-	WD-40 repeat-containing protein
2739	 59.96	0	2889341..2889787	-	148	150397967	-	Smed_2769	-	hypothetical protein
2740	 62.68	0	2889978..2890679	+	233	150397968	-	Smed_2770	-	lysine exporter protein LysE/YggA
2741	 67.85	+2	2890698..2891288	-	196	150397969	-	Smed_2771	-	GCN5-related N-acetyltransferase
2742	 62.79	0	2891376..2892509	-	377	150397970	-	Smed_2772	-	Orn/DAP/Arg decarboxylase 2
61.69	MEAN

2.82	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.