IslandPathversion 1.0

IslandPath Analysis: Sinorhizobium medicae WSM419



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.69 STD DEV: 2.82
Sinorhizobium medicae WSM419, complete genome - 1..3781904
3529 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2597	 61.78	0	2727533..2728843	-	436	150397825	tolB	Smed_2627	-	translocation protein TolB
2598	 63.31	0	2728907..2729977	-	356	150397826	-	Smed_2628	-	putative signal peptide protein
2599	 61.33	0	2729986..2730435	-	149	150397827	-	Smed_2629	-	biopolymer transport TolR
2600	 62.78	0	2730463..2731182	-	239	150397828	-	Smed_2630	-	Tol-Pal system TolQ
2601	 62.16	0	2731583..2734180	+	865	150397829	-	Smed_2631	-	DNA ligase D
2602	 61.94	0	2734298..2734741	-	147	150397830	-	Smed_2632	-	Pol-Pal system-associated acyl-CoA thioesterase
2603	 59.30	0	2734869..2736089	+	406	150397831	-	Smed_2633	-	NAD-dependent epimerase/dehydratase
2604	 61.43	0	2736086..2736964	+	292	150397832	-	Smed_2634	-	glycosyl transferase family protein
2605	 65.01	+1	2736961..2737866	+	301	150397833	-	Smed_2635	-	NAD-dependent epimerase/dehydratase
2606	 63.01	0	2737895..2738797	-	300	150397834	-	Smed_2636	-	metallophosphoesterase
2607	 64.94	+1	2738799..2739839	-	346	150397835	ruvB	Smed_2637	-	Holliday junction DNA helicase B
2608	 63.75	0	2740014..2740631	-	205	150397836	ruvA	Smed_2638	-	Holliday junction DNA helicase motor protein
2609	 61.51	0	2740691..2741194	-	167	150397837	ruvC	Smed_2639	-	Holliday junction resolvase
2610	 62.21	0	2741373..2742404	+	343	150397838	-	Smed_2640	-	luciferase family protein
2611	 61.58	0	2742353..2743099	-	248	150397839	-	Smed_2641	-	hypothetical protein
2612	 63.43	0	2743248..2744081	-	277	150397840	-	Smed_2642	-	hypothetical protein
2613	 62.54	0	2744253..2747429	-	1058	150397841	-	Smed_2643	-	hydrophobe/amphiphile efflux-1 (HAE1) family protein
2614	 64.94	+1	2747426..2748583	-	385	150397842	-	Smed_2644	-	RND family efflux transporter MFP subunit
2615	 61.94	0	2748939..2749763	-	274	150397843	-	Smed_2645	-	metallophosphoesterase
2616	 61.86	0	2749871..2750452	-	193	150397844	-	Smed_2646	-	5-formyltetrahydrofolate cyclo-ligase
2617	 63.10	0	2750954..2751934	+	326	150397845	-	Smed_2647	-	LysR family transcriptional regulator
2618	 60.05	0	2752126..2752503	-	125	150397846	-	Smed_2648	-	hypothetical protein
2619	 60.74	0	2752516..2752785	-	89	150397847	-	Smed_2649	-	hypothetical protein
2620	 63.24	0	2753171..2755126	+	651	150397848	-	Smed_2650	-	transketolase
2621	 61.82	0	2755196..2756206	+	336	150397849	-	Smed_2651	-	glyceraldehyde-3-phosphate dehydrogenase, type I
2622	 64.47	0	2756212..2756802	+	196	150397850	-	Smed_2652	-	hypothetical protein
2623	 64.50	0	2756802..2758001	+	399	150397851	pgk	Smed_2653	-	phosphoglycerate kinase
2624	 64.13	0	2758320..2759345	+	341	150397852	-	Smed_2654	-	fructose-bisphosphate aldolase
2625	 63.94	0	2759579..2760496	+	305	150397853	-	Smed_2655	-	PhzF family phenazine biosynthesis protein
2626	 61.52	0	2760546..2762450	-	634	150397854	-	Smed_2656	-	adenylyl cyclase class-3/4/guanylyl cyclase
2627	 62.82	0	2762625..2762780	-	51	150397855	-	Smed_2657	-	hypothetical protein
2628	 63.13	0	2762955..2764256	+	433	150397856	-	Smed_2658	-	major facilitator transporter
2629	 58.20	-1	2764243..2764431	+	62	150397857	-	Smed_2659	-	hypothetical protein
2630	 59.73	0	2764959..2765477	+	172	150397858	-	Smed_2660	-	hypothetical protein
2631	 61.71	0	2765714..2765935	-	73	150397859	rpmE	Smed_2661	-	50S ribosomal protein L31
2632	 65.11	+1	2766247..2768040	+	597	150397860	-	Smed_2662	-	lipid ABC transporter ATPase/inner membrane protein
2633	 60.16	0	2768043..2769071	-	342	150397861	-	Smed_2663	-	hypothetical protein
2634	 63.23	0	2769074..2770180	-	368	150397862	-	Smed_2664	-	hypothetical protein
2635	 67.04	+1	2770474..2771274	-	266	150397863	-	Smed_2665	-	inositol-phosphate phosphatase
2636	 63.79	0	2771514..2772659	-	381	150397864	-	Smed_2666	-	Sel1 domain-containing protein
2637	 63.46	0	2772669..2773322	-	217	150397865	-	Smed_2667	-	thiamine-phosphate pyrophosphorylase
2638	 62.58	0	2773423..2774205	+	260	150397866	-	Smed_2668	-	hypothetical protein
2639	 61.69	0	2774303..2774563	+	86	150397867	-	Smed_2669	-	regulatory protein ArsR
2640	 54.60	-2	2774726..2774899	-	57	150397868	-	Smed_2670	-	hypothetical protein
2641	 54.90	-2	2775110..2775313	+	67	150397869	-	Smed_2671	-	hypothetical protein
2642	 66.67	+1	2775365..2775829	+	154	150397870	-	Smed_2672	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
2643	 66.38	+1	2775826..2776875	+	349	150397871	-	Smed_2673	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
2644	 57.14	-1	2777079..2777204	+	41	150397872	rpmJ	Smed_2674	-	50S ribosomal protein L36
2645	 61.93	0	2777296..2777907	+	203	150397873	-	Smed_2675	-	TPR repeat-containing protein
2646	 64.24	0	2778092..2779531	-	479	150397874	-	Smed_2676	-	pyruvate kinase
2647	 60.27	0	2779531..2779968	-	145	150397875	-	Smed_2677	-	hypothetical protein
2648	 62.89	0	2780252..2781046	+	264	150397876	-	Smed_2678	-	N-formylglutamate amidohydrolase
2649	 61.11	0	2781066..2781371	+	101	150397877	-	Smed_2679	-	hypothetical protein
2650	 58.97	0	2781476..2781748	+	90	150397878	-	Smed_2680	-	hypothetical protein
2651	 48.39	-2	2782786..2782971	-	61	150397879	-	Smed_2681	-	hypothetical protein
2652	 64.97	+1	2783154..2784980	-	608	150397880	-	Smed_2682	-	hypothetical protein
2653	 62.61	0	2785161..2786810	-	549	150397881	-	Smed_2683	-	two component, sigma54 specific, Fis family transcriptional regulator
2654	 61.94	0	2786895..2788778	+	627	150397882	-	Smed_2684	-	pepF/M3 family oligoendopeptidase
2655	 64.34	0	2788831..2789988	+	385	150397883	-	Smed_2685	-	para-aminobenzoate synthase component I
2656	 66.35	+1	2789985..2790611	+	208	150397884	-	Smed_2686	-	hypothetical protein
2657	 61.20	0	2790576..2791526	-	316	150397885	-	Smed_2687	-	diguanylate cyclase
2658	 61.57	0	2791932..2793383	+	483	150397886	-	Smed_2688	-	homospermidine synthase
2659	 60.70	0	2793693..2794061	+	122	150397887	-	Smed_2689	-	putative outer membrane lipoprotein
2660	 62.79	0	2794291..2796174	+	627	150397888	-	Smed_2690	-	5'-nucleotidase domain-containing protein
2661	 60.98	0	2796292..2797329	+	345	150397889	hemH	Smed_2691	-	ferrochelatase
2662	 66.37	+1	2797393..2798409	-	338	150397890	-	Smed_2692	-	NAD-dependent glycerol-3-phosphate dehydrogenase domain-containing protein
2663	 62.08	0	2798446..2800494	-	682	150397891	-	Smed_2693	-	short chain dehydrogenase
2664	 62.72	0	2800573..2801637	-	354	150397892	-	Smed_2694	-	ABC transporter related
2665	 63.22	0	2801697..2802422	-	241	150397893	-	Smed_2695	-	short-chain dehydrogenase/reductase SDR
2666	 61.99	0	2802494..2803990	-	498	150397894	-	Smed_2696	-	extracellular solute-binding protein
2667	 61.56	0	2804060..2804941	-	293	150397895	-	Smed_2697	-	binding-protein-dependent transport systems inner membrane component
2668	 61.15	0	2804943..2805830	-	295	150397896	-	Smed_2698	-	binding-protein-dependent transport systems inner membrane component
2669	 64.26	0	2805966..2807501	-	511	150397897	glpD	Smed_2699	-	glycerol-3-phosphate dehydrogenase
2670	 64.33	0	2807498..2808310	-	270	150397898	-	Smed_2700	-	HAD family hydrolase
2671	 64.09	0	2808315..2809670	-	451	150397899	-	Smed_2701	-	3-dehydroquinate synthase
2672	 62.28	0	2809744..2810769	+	341	150397900	-	Smed_2702	-	DeoR family transcriptional regulator
2673	 65.39	+1	2810824..2812389	+	521	150397901	-	Smed_2703	-	carbohydrate kinase FGGY
2674	 61.26	0	2812499..2813497	+	332	150397902	-	Smed_2704	-	band 7 protein
2675	 67.54	+2	2813494..2813949	+	151	150397903	-	Smed_2705	-	hypothetical protein
2676	 65.03	+1	2814057..2815460	+	467	150397904	-	Smed_2706	-	hypothetical protein
2677	 61.49	0	2815524..2816411	-	295	150397905	-	Smed_2707	-	UTP-glucose-1-phosphate uridylyltransferase
2678	 60.43	0	2816713..2817930	+	405	150397906	-	Smed_2708	-	lytic murein transglycosylase
2679	 62.83	0	2818041..2819291	+	416	150397907	-	Smed_2709	-	hypothetical protein
2680	 63.37	0	2819477..2820934	-	485	150397908	gltD	Smed_2710	-	glutamate synthase subunit beta
2681	 62.90	0	2821036..2825760	-	1574	150397909	-	Smed_2711	-	glutamate synthase (ferredoxin)
2682	 64.37	0	2826338..2827384	+	348	150397910	-	Smed_2712	-	threonine aldolase
2683	 63.95	0	2827417..2828262	-	281	150397911	-	Smed_2713	-	LysR family transcriptional regulator
2684	 62.95	0	2828354..2829349	+	331	150397912	-	Smed_2714	-	bile acid:sodium symporter
2685	 58.23	-1	2829411..2829872	-	153	150397913	-	Smed_2715	-	heat shock protein Hsp20
2686	 64.10	0	2830247..2831260	+	337	150397914	-	Smed_2716	-	alpha/beta hydrolase fold
2687	 62.86	0	2831287..2832153	-	288	150397915	-	Smed_2717	-	histidinol-phosphate phosphatase, putative
2688	 62.24	0	2832368..2833249	-	293	150397916	-	Smed_2718	-	N-formylglutamate amidohydrolase
2689	 58.40	-1	2833438..2833800	+	120	150397917	-	Smed_2719	-	response regulator receiver protein
2690	 60.42	0	2834218..2834457	-	79	150397918	-	Smed_2720	-	HicB family protein
2691	 60.72	0	2835011..2835397	+	128	150397919	-	Smed_2721	-	Sel1 domain-containing protein
2692	 61.82	0	2835699..2835863	+	54	150397920	-	Smed_2722	-	hypothetical protein
2693	 64.17	0	2835974..2837812	+	612	150397921	-	Smed_2723	-	dihydroxy-acid dehydratase
2694	 57.78	-1	2837880..2838284	-	134	150397922	-	Smed_2724	-	glutathione-dependent formaldehyde-activating GFA
2695	 63.25	0	2838386..2838853	+	155	150397923	-	Smed_2725	-	MarR family transcriptional regulator
2696	 58.11	-1	2839003..2839446	-	147	150397924	-	Smed_2726	-	pseudoazurin
61.69	MEAN

2.82	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.