version 1.0
Sinorhizobium medicae WSM419, complete genome - 1..3781904 3529 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2584 59.27 0 2709345..2710250 + 301 150397812 - Smed_2614 - RNA polymerase factor sigma-32 2585 65.36 +1 2710335..2712635 - 766 150397813 - Smed_2615 - hypothetical protein 2586 63.13 0 2712699..2713997 - 432 150397814 - Smed_2616 - adenylosuccinate synthetase 2587 60.12 0 2714117..2715094 + 325 150397815 - Smed_2617 - hypothetical protein 2588 61.90 0 2715154..2716749 - 531 150397816 - Smed_2618 - D-3-phosphoglycerate dehydrogenase 2589 63.70 0 2716829..2718007 - 392 150397817 - Smed_2619 - phosphoserine aminotransferase 2590 62.66 0 2718145..2718942 - 265 150397818 - Smed_2620 - putative heat resistant agglutinin 1 signal peptide protein 2591 59.42 0 2719134..2719961 - 275 150397819 - Smed_2621 - porin opacity type 2592 62.39 0 2720203..2721558 - 451 150397820 - Smed_2622 - phosphoglucosamine mutase 2593 63.26 0 2721994..2723931 - 645 150397821 - Smed_2623 - ATP-dependent metalloprotease FtsH 2594 65.35 +1 2724031..2725392 - 453 150397822 - Smed_2624 - tRNA(Ile)-lysidine synthetase 2595 62.33 0 2725404..2726441 - 345 150397823 - Smed_2625 - Tol-Pal system YbgF 2596 65.91 +1 2726633..2727163 - 176 150397824 - Smed_2626 - peptidoglycan-associated lipoprotein 2597 61.78 0 2727533..2728843 - 436 150397825 tolB Smed_2627 - translocation protein TolB 2598 63.31 0 2728907..2729977 - 356 150397826 - Smed_2628 - putative signal peptide protein 2599 61.33 0 2729986..2730435 - 149 150397827 - Smed_2629 - biopolymer transport TolR 2600 62.78 0 2730463..2731182 - 239 150397828 - Smed_2630 - Tol-Pal system TolQ 2601 62.16 0 2731583..2734180 + 865 150397829 - Smed_2631 - DNA ligase D 2602 61.94 0 2734298..2734741 - 147 150397830 - Smed_2632 - Pol-Pal system-associated acyl-CoA thioesterase 2603 59.30 0 2734869..2736089 + 406 150397831 - Smed_2633 - NAD-dependent epimerase/dehydratase 2604 61.43 0 2736086..2736964 + 292 150397832 - Smed_2634 - glycosyl transferase family protein 2605 65.01 +1 2736961..2737866 + 301 150397833 - Smed_2635 - NAD-dependent epimerase/dehydratase 2606 63.01 0 2737895..2738797 - 300 150397834 - Smed_2636 - metallophosphoesterase 2607 64.94 +1 2738799..2739839 - 346 150397835 ruvB Smed_2637 - Holliday junction DNA helicase B 2608 63.75 0 2740014..2740631 - 205 150397836 ruvA Smed_2638 - Holliday junction DNA helicase motor protein 2609 61.51 0 2740691..2741194 - 167 150397837 ruvC Smed_2639 - Holliday junction resolvase 2610 62.21 0 2741373..2742404 + 343 150397838 - Smed_2640 - luciferase family protein 2611 61.58 0 2742353..2743099 - 248 150397839 - Smed_2641 - hypothetical protein 2612 63.43 0 2743248..2744081 - 277 150397840 - Smed_2642 - hypothetical protein 2613 62.54 0 2744253..2747429 - 1058 150397841 - Smed_2643 - hydrophobe/amphiphile efflux-1 (HAE1) family protein 2614 64.94 +1 2747426..2748583 - 385 150397842 - Smed_2644 - RND family efflux transporter MFP subunit 2615 61.94 0 2748939..2749763 - 274 150397843 - Smed_2645 - metallophosphoesterase 2616 61.86 0 2749871..2750452 - 193 150397844 - Smed_2646 - 5-formyltetrahydrofolate cyclo-ligase 2617 63.10 0 2750954..2751934 + 326 150397845 - Smed_2647 - LysR family transcriptional regulator 2618 60.05 0 2752126..2752503 - 125 150397846 - Smed_2648 - hypothetical protein 2619 60.74 0 2752516..2752785 - 89 150397847 - Smed_2649 - hypothetical protein 2620 63.24 0 2753171..2755126 + 651 150397848 - Smed_2650 - transketolase 2621 61.82 0 2755196..2756206 + 336 150397849 - Smed_2651 - glyceraldehyde-3-phosphate dehydrogenase, type I 2622 64.47 0 2756212..2756802 + 196 150397850 - Smed_2652 - hypothetical protein 2623 64.50 0 2756802..2758001 + 399 150397851 pgk Smed_2653 - phosphoglycerate kinase 2624 64.13 0 2758320..2759345 + 341 150397852 - Smed_2654 - fructose-bisphosphate aldolase 2625 63.94 0 2759579..2760496 + 305 150397853 - Smed_2655 - PhzF family phenazine biosynthesis protein 2626 61.52 0 2760546..2762450 - 634 150397854 - Smed_2656 - adenylyl cyclase class-3/4/guanylyl cyclase 2627 62.82 0 2762625..2762780 - 51 150397855 - Smed_2657 - hypothetical protein 2628 63.13 0 2762955..2764256 + 433 150397856 - Smed_2658 - major facilitator transporter 2629 58.20 -1 2764243..2764431 + 62 150397857 - Smed_2659 - hypothetical protein 2630 59.73 0 2764959..2765477 + 172 150397858 - Smed_2660 - hypothetical protein 2631 61.71 0 2765714..2765935 - 73 150397859 rpmE Smed_2661 - 50S ribosomal protein L31 2632 65.11 +1 2766247..2768040 + 597 150397860 - Smed_2662 - lipid ABC transporter ATPase/inner membrane protein 2633 60.16 0 2768043..2769071 - 342 150397861 - Smed_2663 - hypothetical protein 2634 63.23 0 2769074..2770180 - 368 150397862 - Smed_2664 - hypothetical protein 2635 67.04 +1 2770474..2771274 - 266 150397863 - Smed_2665 - inositol-phosphate phosphatase 2636 63.79 0 2771514..2772659 - 381 150397864 - Smed_2666 - Sel1 domain-containing protein 2637 63.46 0 2772669..2773322 - 217 150397865 - Smed_2667 - thiamine-phosphate pyrophosphorylase 2638 62.58 0 2773423..2774205 + 260 150397866 - Smed_2668 - hypothetical protein 2639 61.69 0 2774303..2774563 + 86 150397867 - Smed_2669 - regulatory protein ArsR 2640 54.60 -2 2774726..2774899 - 57 150397868 - Smed_2670 - hypothetical protein 2641 54.90 -2 2775110..2775313 + 67 150397869 - Smed_2671 - hypothetical protein 2642 66.67 +1 2775365..2775829 + 154 150397870 - Smed_2672 - phosphoribosylaminoimidazole carboxylase, catalytic subunit 2643 66.38 +1 2775826..2776875 + 349 150397871 - Smed_2673 - phosphoribosylaminoimidazole carboxylase ATPase subunit 2644 57.14 -1 2777079..2777204 + 41 150397872 rpmJ Smed_2674 - 50S ribosomal protein L36 2645 61.93 0 2777296..2777907 + 203 150397873 - Smed_2675 - TPR repeat-containing protein 2646 64.24 0 2778092..2779531 - 479 150397874 - Smed_2676 - pyruvate kinase 2647 60.27 0 2779531..2779968 - 145 150397875 - Smed_2677 - hypothetical protein 2648 62.89 0 2780252..2781046 + 264 150397876 - Smed_2678 - N-formylglutamate amidohydrolase 2649 61.11 0 2781066..2781371 + 101 150397877 - Smed_2679 - hypothetical protein 2650 58.97 0 2781476..2781748 + 90 150397878 - Smed_2680 - hypothetical protein 2651 48.39 -2 2782786..2782971 - 61 150397879 - Smed_2681 - hypothetical protein 2652 64.97 +1 2783154..2784980 - 608 150397880 - Smed_2682 - hypothetical protein 2653 62.61 0 2785161..2786810 - 549 150397881 - Smed_2683 - two component, sigma54 specific, Fis family transcriptional regulator 2654 61.94 0 2786895..2788778 + 627 150397882 - Smed_2684 - pepF/M3 family oligoendopeptidase 2655 64.34 0 2788831..2789988 + 385 150397883 - Smed_2685 - para-aminobenzoate synthase component I 2656 66.35 +1 2789985..2790611 + 208 150397884 - Smed_2686 - hypothetical protein 2657 61.20 0 2790576..2791526 - 316 150397885 - Smed_2687 - diguanylate cyclase 2658 61.57 0 2791932..2793383 + 483 150397886 - Smed_2688 - homospermidine synthase 2659 60.70 0 2793693..2794061 + 122 150397887 - Smed_2689 - putative outer membrane lipoprotein 2660 62.79 0 2794291..2796174 + 627 150397888 - Smed_2690 - 5'-nucleotidase domain-containing protein 2661 60.98 0 2796292..2797329 + 345 150397889 hemH Smed_2691 - ferrochelatase 2662 66.37 +1 2797393..2798409 - 338 150397890 - Smed_2692 - NAD-dependent glycerol-3-phosphate dehydrogenase domain-containing protein 2663 62.08 0 2798446..2800494 - 682 150397891 - Smed_2693 - short chain dehydrogenase 2664 62.72 0 2800573..2801637 - 354 150397892 - Smed_2694 - ABC transporter related 2665 63.22 0 2801697..2802422 - 241 150397893 - Smed_2695 - short-chain dehydrogenase/reductase SDR 2666 61.99 0 2802494..2803990 - 498 150397894 - Smed_2696 - extracellular solute-binding protein 2667 61.56 0 2804060..2804941 - 293 150397895 - Smed_2697 - binding-protein-dependent transport systems inner membrane component 2668 61.15 0 2804943..2805830 - 295 150397896 - Smed_2698 - binding-protein-dependent transport systems inner membrane component 2669 64.26 0 2805966..2807501 - 511 150397897 glpD Smed_2699 - glycerol-3-phosphate dehydrogenase 2670 64.33 0 2807498..2808310 - 270 150397898 - Smed_2700 - HAD family hydrolase 2671 64.09 0 2808315..2809670 - 451 150397899 - Smed_2701 - 3-dehydroquinate synthase 2672 62.28 0 2809744..2810769 + 341 150397900 - Smed_2702 - DeoR family transcriptional regulator 2673 65.39 +1 2810824..2812389 + 521 150397901 - Smed_2703 - carbohydrate kinase FGGY 2674 61.26 0 2812499..2813497 + 332 150397902 - Smed_2704 - band 7 protein 2675 67.54 +2 2813494..2813949 + 151 150397903 - Smed_2705 - hypothetical protein 2676 65.03 +1 2814057..2815460 + 467 150397904 - Smed_2706 - hypothetical protein 2677 61.49 0 2815524..2816411 - 295 150397905 - Smed_2707 - UTP-glucose-1-phosphate uridylyltransferase 2678 60.43 0 2816713..2817930 + 405 150397906 - Smed_2708 - lytic murein transglycosylase 2679 62.83 0 2818041..2819291 + 416 150397907 - Smed_2709 - hypothetical protein 2680 63.37 0 2819477..2820934 - 485 150397908 gltD Smed_2710 - glutamate synthase subunit beta 2681 62.90 0 2821036..2825760 - 1574 150397909 - Smed_2711 - glutamate synthase (ferredoxin) 2682 64.37 0 2826338..2827384 + 348 150397910 - Smed_2712 - threonine aldolase 2683 63.95 0 2827417..2828262 - 281 150397911 - Smed_2713 - LysR family transcriptional regulator 61.69 MEAN 2.82 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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