IslandPathversion 1.0

IslandPath Analysis: Sinorhizobium medicae WSM419



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.69 STD DEV: 2.82
Sinorhizobium medicae WSM419, complete genome - 1..3781904
3529 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2542	 61.98	0	2668810..2669940	-	376	150397770	-	Smed_2572	-	Serine-type D-Ala-D-Ala carboxypeptidase
2543	 64.00	0	2670146..2671309	+	387	150397771	-	Smed_2573	-	amidohydrolase
2544	 61.29	0	2671333..2671797	+	154	150397772	-	Smed_2574	-	AsnC family transcriptional regulator
2545	 61.88	0	2671821..2672864	-	347	150397773	-	Smed_2575	-	alcohol dehydrogenase
2546	 62.31	0	2673083..2674024	+	313	150397774	-	Smed_2576	-	AraC-like transcriptional regulator
2547	 61.45	0	2674077..2674574	-	165	150397775	-	Smed_2577	-	AsnC family transcriptional regulator
2548	 64.25	0	2674641..2677697	+	1018	150397776	-	Smed_2578	-	hypothetical protein
2549	 63.30	0	2677799..2678809	+	336	150397777	-	Smed_2579	-	extracellular solute-binding protein
2550	 65.27	+1	2678871..2681798	-	975	150397778	-	Smed_2580	-	hypothetical protein
2551	 61.83	0	2681831..2682574	-	247	150397779	-	Smed_2581	-	GntR family transcriptional regulator
2552	 66.08	+1	2682701..2684074	+	457	150397780	-	Smed_2582	-	N-formimino-L-glutamate deiminase
2553	 59.03	0	2684111..2685145	+	344	150397781	-	Smed_2583	-	substrate-binding region of ABC-type glycine betaine transport system
2554	 63.64	0	2685277..2686134	+	285	150397782	-	Smed_2584	-	binding-protein-dependent transport systems inner membrane component
2555	 60.02	0	2686127..2686954	+	275	150397783	-	Smed_2585	-	ABC transporter related
2556	 65.28	+1	2686947..2688461	+	504	150397784	-	Smed_2586	-	histidine ammonia-lyase
2557	 62.14	0	2688482..2689807	+	441	150397785	-	Smed_2587	-	nucleoside recognition domain-containing protein
2558	 63.64	0	2689795..2690388	+	197	150397786	-	Smed_2588	-	hypothetical protein
2559	 63.68	0	2690391..2690624	-	77	150397787	-	Smed_2589	-	hypothetical protein
2560	 57.67	-1	2690747..2690935	-	62	150397788	-	Smed_2590	-	hypothetical protein
2561	 56.22	-1	2691164..2691364	+	66	150397789	-	Smed_2591	-	putative signal peptide protein
2562	 57.21	-1	2691445..2691645	-	66	150397790	-	Smed_2592	-	hypothetical protein
2563	 56.41	-1	2691627..2691860	-	77	150397791	-	Smed_2593	-	hypothetical protein
2564	 61.77	0	2692054..2692380	-	108	150397792	-	Smed_2594	-	putative signal peptide protein
2565	 59.68	0	2692638..2693081	-	147	150397793	-	Smed_2595	-	endoribonuclease L-PSP
2566	 63.05	0	2693314..2694087	+	257	150397794	-	Smed_2596	-	TetR family transcriptional regulator
2567	 60.56	0	2694095..2694994	-	299	150397795	-	Smed_2597	-	beta-lactamase-like protein
2568	 58.42	-1	2695030..2695575	-	181	150397796	-	Smed_2598	-	isochorismatase hydrolase
2569	 56.69	-1	2695628..2696659	+	343	150397797	-	Smed_2599	-	AraC family transcriptional regulator
2570	 65.16	+1	2697759..2698955	-	398	150397798	trmU	Smed_2600	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
2571	 62.10	0	2699229..2699972	-	247	150397799	-	Smed_2601	-	regulatory protein LuxR
2572	 61.23	0	2700351..2700626	+	91	150397800	-	Smed_2602	-	hypothetical protein
2573	 64.18	0	2700827..2701108	+	93	150397801	-	Smed_2603	-	hypothetical protein
2574	 57.55	-1	2701219..2701569	-	116	150397802	-	Smed_2604	-	hypothetical protein
2575	 57.98	-1	2702115..2702816	+	233	150397803	-	Smed_2605	-	two component transcriptional regulator
2576	 56.00	-2	2703008..2703307	+	99	150397804	-	Smed_2606	-	hypothetical protein
2577	 60.06	0	2703353..2703715	-	120	150397805	-	Smed_2607	-	response regulator receiver protein
2578	 62.44	0	2703926..2704588	-	220	150397806	-	Smed_2608	-	hypothetical protein
2579	 62.33	0	2704955..2705554	+	199	150397807	-	Smed_2609	-	hypothetical protein
2580	 63.90	0	2705707..2706789	+	360	150397808	-	Smed_2610	-	hypothetical protein
2581	 66.91	+1	2706857..2707684	-	275	150397809	-	Smed_2611	-	tRNA/rRNA methyltransferase (SpoU)
2582	 65.62	+1	2707689..2708072	-	127	150397810	-	Smed_2612	-	hypothetical protein
2583	 64.15	0	2708116..2709147	+	343	150397811	-	Smed_2613	-	RluA family pseudouridine synthase
2584	 59.27	0	2709345..2710250	+	301	150397812	-	Smed_2614	-	RNA polymerase factor sigma-32
2585	 65.36	+1	2710335..2712635	-	766	150397813	-	Smed_2615	-	hypothetical protein
2586	 63.13	0	2712699..2713997	-	432	150397814	-	Smed_2616	-	adenylosuccinate synthetase
2587	 60.12	0	2714117..2715094	+	325	150397815	-	Smed_2617	-	hypothetical protein
2588	 61.90	0	2715154..2716749	-	531	150397816	-	Smed_2618	-	D-3-phosphoglycerate dehydrogenase
2589	 63.70	0	2716829..2718007	-	392	150397817	-	Smed_2619	-	phosphoserine aminotransferase
2590	 62.66	0	2718145..2718942	-	265	150397818	-	Smed_2620	-	putative heat resistant agglutinin 1 signal peptide protein
2591	 59.42	0	2719134..2719961	-	275	150397819	-	Smed_2621	-	porin opacity type
2592	 62.39	0	2720203..2721558	-	451	150397820	-	Smed_2622	-	phosphoglucosamine mutase
2593	 63.26	0	2721994..2723931	-	645	150397821	-	Smed_2623	-	ATP-dependent metalloprotease FtsH
2594	 65.35	+1	2724031..2725392	-	453	150397822	-	Smed_2624	-	tRNA(Ile)-lysidine synthetase
2595	 62.33	0	2725404..2726441	-	345	150397823	-	Smed_2625	-	Tol-Pal system YbgF
2596	 65.91	+1	2726633..2727163	-	176	150397824	-	Smed_2626	-	peptidoglycan-associated lipoprotein
2597	 61.78	0	2727533..2728843	-	436	150397825	tolB	Smed_2627	-	translocation protein TolB
2598	 63.31	0	2728907..2729977	-	356	150397826	-	Smed_2628	-	putative signal peptide protein
2599	 61.33	0	2729986..2730435	-	149	150397827	-	Smed_2629	-	biopolymer transport TolR
2600	 62.78	0	2730463..2731182	-	239	150397828	-	Smed_2630	-	Tol-Pal system TolQ
2601	 62.16	0	2731583..2734180	+	865	150397829	-	Smed_2631	-	DNA ligase D
2602	 61.94	0	2734298..2734741	-	147	150397830	-	Smed_2632	-	Pol-Pal system-associated acyl-CoA thioesterase
2603	 59.30	0	2734869..2736089	+	406	150397831	-	Smed_2633	-	NAD-dependent epimerase/dehydratase
2604	 61.43	0	2736086..2736964	+	292	150397832	-	Smed_2634	-	glycosyl transferase family protein
2605	 65.01	+1	2736961..2737866	+	301	150397833	-	Smed_2635	-	NAD-dependent epimerase/dehydratase
2606	 63.01	0	2737895..2738797	-	300	150397834	-	Smed_2636	-	metallophosphoesterase
2607	 64.94	+1	2738799..2739839	-	346	150397835	ruvB	Smed_2637	-	Holliday junction DNA helicase B
2608	 63.75	0	2740014..2740631	-	205	150397836	ruvA	Smed_2638	-	Holliday junction DNA helicase motor protein
2609	 61.51	0	2740691..2741194	-	167	150397837	ruvC	Smed_2639	-	Holliday junction resolvase
2610	 62.21	0	2741373..2742404	+	343	150397838	-	Smed_2640	-	luciferase family protein
2611	 61.58	0	2742353..2743099	-	248	150397839	-	Smed_2641	-	hypothetical protein
2612	 63.43	0	2743248..2744081	-	277	150397840	-	Smed_2642	-	hypothetical protein
2613	 62.54	0	2744253..2747429	-	1058	150397841	-	Smed_2643	-	hydrophobe/amphiphile efflux-1 (HAE1) family protein
2614	 64.94	+1	2747426..2748583	-	385	150397842	-	Smed_2644	-	RND family efflux transporter MFP subunit
2615	 61.94	0	2748939..2749763	-	274	150397843	-	Smed_2645	-	metallophosphoesterase
2616	 61.86	0	2749871..2750452	-	193	150397844	-	Smed_2646	-	5-formyltetrahydrofolate cyclo-ligase
2617	 63.10	0	2750954..2751934	+	326	150397845	-	Smed_2647	-	LysR family transcriptional regulator
2618	 60.05	0	2752126..2752503	-	125	150397846	-	Smed_2648	-	hypothetical protein
2619	 60.74	0	2752516..2752785	-	89	150397847	-	Smed_2649	-	hypothetical protein
2620	 63.24	0	2753171..2755126	+	651	150397848	-	Smed_2650	-	transketolase
2621	 61.82	0	2755196..2756206	+	336	150397849	-	Smed_2651	-	glyceraldehyde-3-phosphate dehydrogenase, type I
2622	 64.47	0	2756212..2756802	+	196	150397850	-	Smed_2652	-	hypothetical protein
2623	 64.50	0	2756802..2758001	+	399	150397851	pgk	Smed_2653	-	phosphoglycerate kinase
2624	 64.13	0	2758320..2759345	+	341	150397852	-	Smed_2654	-	fructose-bisphosphate aldolase
2625	 63.94	0	2759579..2760496	+	305	150397853	-	Smed_2655	-	PhzF family phenazine biosynthesis protein
2626	 61.52	0	2760546..2762450	-	634	150397854	-	Smed_2656	-	adenylyl cyclase class-3/4/guanylyl cyclase
2627	 62.82	0	2762625..2762780	-	51	150397855	-	Smed_2657	-	hypothetical protein
2628	 63.13	0	2762955..2764256	+	433	150397856	-	Smed_2658	-	major facilitator transporter
2629	 58.20	-1	2764243..2764431	+	62	150397857	-	Smed_2659	-	hypothetical protein
2630	 59.73	0	2764959..2765477	+	172	150397858	-	Smed_2660	-	hypothetical protein
2631	 61.71	0	2765714..2765935	-	73	150397859	rpmE	Smed_2661	-	50S ribosomal protein L31
2632	 65.11	+1	2766247..2768040	+	597	150397860	-	Smed_2662	-	lipid ABC transporter ATPase/inner membrane protein
2633	 60.16	0	2768043..2769071	-	342	150397861	-	Smed_2663	-	hypothetical protein
2634	 63.23	0	2769074..2770180	-	368	150397862	-	Smed_2664	-	hypothetical protein
2635	 67.04	+1	2770474..2771274	-	266	150397863	-	Smed_2665	-	inositol-phosphate phosphatase
2636	 63.79	0	2771514..2772659	-	381	150397864	-	Smed_2666	-	Sel1 domain-containing protein
2637	 63.46	0	2772669..2773322	-	217	150397865	-	Smed_2667	-	thiamine-phosphate pyrophosphorylase
2638	 62.58	0	2773423..2774205	+	260	150397866	-	Smed_2668	-	hypothetical protein
2639	 61.69	0	2774303..2774563	+	86	150397867	-	Smed_2669	-	regulatory protein ArsR
2640	 54.60	-2	2774726..2774899	-	57	150397868	-	Smed_2670	-	hypothetical protein
2641	 54.90	-2	2775110..2775313	+	67	150397869	-	Smed_2671	-	hypothetical protein
61.69	MEAN

2.82	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.