version 1.0
Sinorhizobium medicae WSM419, complete genome - 1..3781904 3529 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2531 61.32 0 2659127..2659762 - 211 150397759 - Smed_2561 - heat shock protein DnaJ domain-containing protein 2532 64.18 0 2659903..2660184 + 93 150397760 - Smed_2562 - BolA family protein 2533 59.92 0 2660206..2661510 - 434 150397761 - Smed_2563 - hypothetical protein 2534 63.78 0 2661507..2662649 - 380 150397762 aroB Smed_2564 - 3-dehydroquinate synthase 2535 62.18 0 2662646..2663224 - 192 150397763 - Smed_2565 - shikimate kinase 2536 62.00 0 2663552..2663701 + 49 150397764 - Smed_2566 - putative signal peptide protein 2537 62.95 0 2663698..2664639 + 313 150397765 xerD Smed_2567 - site-specific tyrosine recombinase XerD 2538 60.17 0 2664703..2665656 + 317 150397766 - Smed_2568 - acetyl-CoA carboxylase carboxyltransferase subunit alpha 2539 61.20 0 2665898..2667343 + 481 150397767 - Smed_2569 - hypothetical protein 2540 56.96 -1 2667343..2667579 + 78 150397768 - Smed_2570 - SirA family protein 2541 64.75 +1 2667649..2668797 - 382 150397769 - Smed_2571 - cobalamin synthesis protein P47K 2542 61.98 0 2668810..2669940 - 376 150397770 - Smed_2572 - Serine-type D-Ala-D-Ala carboxypeptidase 2543 64.00 0 2670146..2671309 + 387 150397771 - Smed_2573 - amidohydrolase 2544 61.29 0 2671333..2671797 + 154 150397772 - Smed_2574 - AsnC family transcriptional regulator 2545 61.88 0 2671821..2672864 - 347 150397773 - Smed_2575 - alcohol dehydrogenase 2546 62.31 0 2673083..2674024 + 313 150397774 - Smed_2576 - AraC-like transcriptional regulator 2547 61.45 0 2674077..2674574 - 165 150397775 - Smed_2577 - AsnC family transcriptional regulator 2548 64.25 0 2674641..2677697 + 1018 150397776 - Smed_2578 - hypothetical protein 2549 63.30 0 2677799..2678809 + 336 150397777 - Smed_2579 - extracellular solute-binding protein 2550 65.27 +1 2678871..2681798 - 975 150397778 - Smed_2580 - hypothetical protein 2551 61.83 0 2681831..2682574 - 247 150397779 - Smed_2581 - GntR family transcriptional regulator 2552 66.08 +1 2682701..2684074 + 457 150397780 - Smed_2582 - N-formimino-L-glutamate deiminase 2553 59.03 0 2684111..2685145 + 344 150397781 - Smed_2583 - substrate-binding region of ABC-type glycine betaine transport system 2554 63.64 0 2685277..2686134 + 285 150397782 - Smed_2584 - binding-protein-dependent transport systems inner membrane component 2555 60.02 0 2686127..2686954 + 275 150397783 - Smed_2585 - ABC transporter related 2556 65.28 +1 2686947..2688461 + 504 150397784 - Smed_2586 - histidine ammonia-lyase 2557 62.14 0 2688482..2689807 + 441 150397785 - Smed_2587 - nucleoside recognition domain-containing protein 2558 63.64 0 2689795..2690388 + 197 150397786 - Smed_2588 - hypothetical protein 2559 63.68 0 2690391..2690624 - 77 150397787 - Smed_2589 - hypothetical protein 2560 57.67 -1 2690747..2690935 - 62 150397788 - Smed_2590 - hypothetical protein 2561 56.22 -1 2691164..2691364 + 66 150397789 - Smed_2591 - putative signal peptide protein 2562 57.21 -1 2691445..2691645 - 66 150397790 - Smed_2592 - hypothetical protein 2563 56.41 -1 2691627..2691860 - 77 150397791 - Smed_2593 - hypothetical protein 2564 61.77 0 2692054..2692380 - 108 150397792 - Smed_2594 - putative signal peptide protein 2565 59.68 0 2692638..2693081 - 147 150397793 - Smed_2595 - endoribonuclease L-PSP 2566 63.05 0 2693314..2694087 + 257 150397794 - Smed_2596 - TetR family transcriptional regulator 2567 60.56 0 2694095..2694994 - 299 150397795 - Smed_2597 - beta-lactamase-like protein 2568 58.42 -1 2695030..2695575 - 181 150397796 - Smed_2598 - isochorismatase hydrolase 2569 56.69 -1 2695628..2696659 + 343 150397797 - Smed_2599 - AraC family transcriptional regulator 2570 65.16 +1 2697759..2698955 - 398 150397798 trmU Smed_2600 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 2571 62.10 0 2699229..2699972 - 247 150397799 - Smed_2601 - regulatory protein LuxR 2572 61.23 0 2700351..2700626 + 91 150397800 - Smed_2602 - hypothetical protein 2573 64.18 0 2700827..2701108 + 93 150397801 - Smed_2603 - hypothetical protein 2574 57.55 -1 2701219..2701569 - 116 150397802 - Smed_2604 - hypothetical protein 2575 57.98 -1 2702115..2702816 + 233 150397803 - Smed_2605 - two component transcriptional regulator 2576 56.00 -2 2703008..2703307 + 99 150397804 - Smed_2606 - hypothetical protein 2577 60.06 0 2703353..2703715 - 120 150397805 - Smed_2607 - response regulator receiver protein 2578 62.44 0 2703926..2704588 - 220 150397806 - Smed_2608 - hypothetical protein 2579 62.33 0 2704955..2705554 + 199 150397807 - Smed_2609 - hypothetical protein 2580 63.90 0 2705707..2706789 + 360 150397808 - Smed_2610 - hypothetical protein 2581 66.91 +1 2706857..2707684 - 275 150397809 - Smed_2611 - tRNA/rRNA methyltransferase (SpoU) 2582 65.62 +1 2707689..2708072 - 127 150397810 - Smed_2612 - hypothetical protein 2583 64.15 0 2708116..2709147 + 343 150397811 - Smed_2613 - RluA family pseudouridine synthase 2584 59.27 0 2709345..2710250 + 301 150397812 - Smed_2614 - RNA polymerase factor sigma-32 2585 65.36 +1 2710335..2712635 - 766 150397813 - Smed_2615 - hypothetical protein 2586 63.13 0 2712699..2713997 - 432 150397814 - Smed_2616 - adenylosuccinate synthetase 2587 60.12 0 2714117..2715094 + 325 150397815 - Smed_2617 - hypothetical protein 2588 61.90 0 2715154..2716749 - 531 150397816 - Smed_2618 - D-3-phosphoglycerate dehydrogenase 2589 63.70 0 2716829..2718007 - 392 150397817 - Smed_2619 - phosphoserine aminotransferase 2590 62.66 0 2718145..2718942 - 265 150397818 - Smed_2620 - putative heat resistant agglutinin 1 signal peptide protein 2591 59.42 0 2719134..2719961 - 275 150397819 - Smed_2621 - porin opacity type 2592 62.39 0 2720203..2721558 - 451 150397820 - Smed_2622 - phosphoglucosamine mutase 2593 63.26 0 2721994..2723931 - 645 150397821 - Smed_2623 - ATP-dependent metalloprotease FtsH 2594 65.35 +1 2724031..2725392 - 453 150397822 - Smed_2624 - tRNA(Ile)-lysidine synthetase 2595 62.33 0 2725404..2726441 - 345 150397823 - Smed_2625 - Tol-Pal system YbgF 2596 65.91 +1 2726633..2727163 - 176 150397824 - Smed_2626 - peptidoglycan-associated lipoprotein 2597 61.78 0 2727533..2728843 - 436 150397825 tolB Smed_2627 - translocation protein TolB 2598 63.31 0 2728907..2729977 - 356 150397826 - Smed_2628 - putative signal peptide protein 2599 61.33 0 2729986..2730435 - 149 150397827 - Smed_2629 - biopolymer transport TolR 2600 62.78 0 2730463..2731182 - 239 150397828 - Smed_2630 - Tol-Pal system TolQ 2601 62.16 0 2731583..2734180 + 865 150397829 - Smed_2631 - DNA ligase D 2602 61.94 0 2734298..2734741 - 147 150397830 - Smed_2632 - Pol-Pal system-associated acyl-CoA thioesterase 2603 59.30 0 2734869..2736089 + 406 150397831 - Smed_2633 - NAD-dependent epimerase/dehydratase 2604 61.43 0 2736086..2736964 + 292 150397832 - Smed_2634 - glycosyl transferase family protein 2605 65.01 +1 2736961..2737866 + 301 150397833 - Smed_2635 - NAD-dependent epimerase/dehydratase 2606 63.01 0 2737895..2738797 - 300 150397834 - Smed_2636 - metallophosphoesterase 2607 64.94 +1 2738799..2739839 - 346 150397835 ruvB Smed_2637 - Holliday junction DNA helicase B 2608 63.75 0 2740014..2740631 - 205 150397836 ruvA Smed_2638 - Holliday junction DNA helicase motor protein 2609 61.51 0 2740691..2741194 - 167 150397837 ruvC Smed_2639 - Holliday junction resolvase 2610 62.21 0 2741373..2742404 + 343 150397838 - Smed_2640 - luciferase family protein 2611 61.58 0 2742353..2743099 - 248 150397839 - Smed_2641 - hypothetical protein 2612 63.43 0 2743248..2744081 - 277 150397840 - Smed_2642 - hypothetical protein 2613 62.54 0 2744253..2747429 - 1058 150397841 - Smed_2643 - hydrophobe/amphiphile efflux-1 (HAE1) family protein 2614 64.94 +1 2747426..2748583 - 385 150397842 - Smed_2644 - RND family efflux transporter MFP subunit 2615 61.94 0 2748939..2749763 - 274 150397843 - Smed_2645 - metallophosphoesterase 2616 61.86 0 2749871..2750452 - 193 150397844 - Smed_2646 - 5-formyltetrahydrofolate cyclo-ligase 2617 63.10 0 2750954..2751934 + 326 150397845 - Smed_2647 - LysR family transcriptional regulator 2618 60.05 0 2752126..2752503 - 125 150397846 - Smed_2648 - hypothetical protein 2619 60.74 0 2752516..2752785 - 89 150397847 - Smed_2649 - hypothetical protein 2620 63.24 0 2753171..2755126 + 651 150397848 - Smed_2650 - transketolase 2621 61.82 0 2755196..2756206 + 336 150397849 - Smed_2651 - glyceraldehyde-3-phosphate dehydrogenase, type I 2622 64.47 0 2756212..2756802 + 196 150397850 - Smed_2652 - hypothetical protein 2623 64.50 0 2756802..2758001 + 399 150397851 pgk Smed_2653 - phosphoglycerate kinase 2624 64.13 0 2758320..2759345 + 341 150397852 - Smed_2654 - fructose-bisphosphate aldolase 2625 63.94 0 2759579..2760496 + 305 150397853 - Smed_2655 - PhzF family phenazine biosynthesis protein 2626 61.52 0 2760546..2762450 - 634 150397854 - Smed_2656 - adenylyl cyclase class-3/4/guanylyl cyclase 2627 62.82 0 2762625..2762780 - 51 150397855 - Smed_2657 - hypothetical protein 2628 63.13 0 2762955..2764256 + 433 150397856 - Smed_2658 - major facilitator transporter 2629 58.20 -1 2764243..2764431 + 62 150397857 - Smed_2659 - hypothetical protein 2630 59.73 0 2764959..2765477 + 172 150397858 - Smed_2660 - hypothetical protein 61.69 MEAN 2.82 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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