version 1.0
Sinorhizobium medicae WSM419, complete genome - 1..3781904 3529 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2486 65.06 +1 2611277..2612518 - 413 150397714 argJ Smed_2516 - bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein 2487 59.42 0 2612691..2613545 - 284 150397715 - Smed_2517 - PpiC-type peptidyl-prolyl cis-trans isomerase 2488 61.28 0 2613792..2616503 + 903 150397716 - Smed_2518 - preprotein translocase subunit SecA 2489 63.92 0 2616683..2617882 + 399 150397717 - Smed_2519 - Bcr/CflA subfamily drug resistance transporter 2490 62.81 0 2618009..2619433 + 474 150397718 - Smed_2520 - polysaccharide biosynthesis protein 2491 63.06 0 2619430..2620704 + 424 150397719 - Smed_2521 - hypothetical protein 2492 64.72 +1 2620720..2622363 - 547 150397720 - Smed_2522 - AMP-dependent synthetase and ligase 2493 63.62 0 2623349..2623873 + 174 150397721 - Smed_2523 - hypothetical protein 2494 56.99 -1 2623891..2624541 - 216 150397722 - Smed_2524 - HNH endonuclease 2495 66.20 +1 2624555..2625202 - 215 150397723 - Smed_2525 - HhH-GPD family protein 2496 63.98 0 2625257..2626150 + 297 150397724 - Smed_2526 - glutamyl-Q tRNA(Asp) synthetase 2497 60.25 0 2626168..2627040 - 290 150397725 - Smed_2527 - putative ribonuclease BN 2498 64.27 0 2627206..2628039 + 277 150397726 - Smed_2528 - short chain dehydrogenase 2499 63.24 0 2628062..2628265 + 67 150397727 - Smed_2529 - hypothetical protein 2500 63.21 0 2628334..2628912 + 192 150397728 - Smed_2530 - ATP--cobalamin adenosyltransferase 2501 60.73 0 2629037..2629828 + 263 150397729 - Smed_2531 - rhomboid family protein 2502 63.20 0 2630141..2630890 + 249 150397730 - Smed_2532 - electron transfer flavoprotein alpha/beta-subunit 2503 64.84 +1 2630914..2631843 + 309 150397731 - Smed_2533 - electron transfer flavoprotein alpha subunit 2504 60.25 0 2631987..2632859 + 290 150397732 - Smed_2534 - 3-hydroxybutyryl-CoA dehydrogenase 2505 65.19 +1 2632897..2633571 - 224 150397733 - Smed_2535 - redoxin domain-containing protein 2506 63.96 0 2633597..2635000 + 467 150397734 - Smed_2536 - argininosuccinate lyase 2507 64.62 +1 2635220..2635414 + 64 150397735 - Smed_2537 - hypothetical protein 2508 61.70 0 2635429..2636697 + 422 150397736 - Smed_2538 - diaminopimelate decarboxylase 2509 64.26 0 2636838..2639492 + 884 150397737 - Smed_2539 - hypothetical protein 2510 62.50 0 2639706..2640065 - 119 150397738 - Smed_2540 - response regulator receiver protein 2511 58.61 -1 2640280..2640825 - 181 150397739 - Smed_2541 - hypoxanthine phosphoribosyltransferase 2512 65.00 +1 2641074..2641493 - 139 150397740 - Smed_2542 - hypothetical protein 2513 61.11 0 2641960..2642643 + 227 150397741 - Smed_2543 - cell division ATP-binding protein FtsE 2514 62.65 0 2642636..2643655 + 339 150397742 - Smed_2544 - hypothetical protein 2515 61.66 0 2643761..2644459 + 232 150397743 - Smed_2545 - hypothetical protein 2516 61.92 0 2644593..2645372 + 259 150397744 - Smed_2546 - phospholipid/glycerol acyltransferase 2517 63.16 0 2645393..2645962 - 189 150397745 - Smed_2547 - ChaC family protein 2518 62.82 0 2646218..2647231 + 337 150397746 - Smed_2548 - hypothetical protein 2519 62.46 0 2647319..2648245 - 308 150397747 - Smed_2549 - cyclohexadienyl dehydrogenase 2520 61.61 0 2648242..2649348 - 368 150397748 - Smed_2550 - histidinol-phosphate aminotransferase 2521 64.14 0 2649454..2650206 - 250 150397749 - Smed_2551 - methyltransferase type 11 2522 60.83 0 2650305..2651075 + 256 150397750 - Smed_2552 - hydroxyacylglutathione hydrolase 2523 66.02 +1 2651075..2651539 + 154 150397751 - Smed_2553 - hypothetical protein 2524 61.95 0 2651603..2652493 - 296 150397752 - Smed_2554 - hypothetical protein 2525 59.72 0 2652630..2653406 - 258 150397753 - Smed_2555 - putative signal peptide protein 2526 63.23 0 2653835..2654125 + 96 150397754 rpmB Smed_2556 - 50S ribosomal protein L28 2527 61.97 0 2654261..2654899 + 212 150397755 - Smed_2557 - hypothetical protein 2528 62.44 0 2654946..2655938 - 330 150397756 - Smed_2558 - putative signal peptide protein 2529 63.77 0 2656021..2657916 - 631 150397757 - Smed_2559 - cobalt chelatase, pCobT subunit 2530 60.54 0 2658056..2659051 - 331 150397758 - Smed_2560 - cobalt chelatase, pCobS small subunit 2531 61.32 0 2659127..2659762 - 211 150397759 - Smed_2561 - heat shock protein DnaJ domain-containing protein 2532 64.18 0 2659903..2660184 + 93 150397760 - Smed_2562 - BolA family protein 2533 59.92 0 2660206..2661510 - 434 150397761 - Smed_2563 - hypothetical protein 2534 63.78 0 2661507..2662649 - 380 150397762 aroB Smed_2564 - 3-dehydroquinate synthase 2535 62.18 0 2662646..2663224 - 192 150397763 - Smed_2565 - shikimate kinase 2536 62.00 0 2663552..2663701 + 49 150397764 - Smed_2566 - putative signal peptide protein 2537 62.95 0 2663698..2664639 + 313 150397765 xerD Smed_2567 - site-specific tyrosine recombinase XerD 2538 60.17 0 2664703..2665656 + 317 150397766 - Smed_2568 - acetyl-CoA carboxylase carboxyltransferase subunit alpha 2539 61.20 0 2665898..2667343 + 481 150397767 - Smed_2569 - hypothetical protein 2540 56.96 -1 2667343..2667579 + 78 150397768 - Smed_2570 - SirA family protein 2541 64.75 +1 2667649..2668797 - 382 150397769 - Smed_2571 - cobalamin synthesis protein P47K 2542 61.98 0 2668810..2669940 - 376 150397770 - Smed_2572 - Serine-type D-Ala-D-Ala carboxypeptidase 2543 64.00 0 2670146..2671309 + 387 150397771 - Smed_2573 - amidohydrolase 2544 61.29 0 2671333..2671797 + 154 150397772 - Smed_2574 - AsnC family transcriptional regulator 2545 61.88 0 2671821..2672864 - 347 150397773 - Smed_2575 - alcohol dehydrogenase 2546 62.31 0 2673083..2674024 + 313 150397774 - Smed_2576 - AraC-like transcriptional regulator 2547 61.45 0 2674077..2674574 - 165 150397775 - Smed_2577 - AsnC family transcriptional regulator 2548 64.25 0 2674641..2677697 + 1018 150397776 - Smed_2578 - hypothetical protein 2549 63.30 0 2677799..2678809 + 336 150397777 - Smed_2579 - extracellular solute-binding protein 2550 65.27 +1 2678871..2681798 - 975 150397778 - Smed_2580 - hypothetical protein 2551 61.83 0 2681831..2682574 - 247 150397779 - Smed_2581 - GntR family transcriptional regulator 2552 66.08 +1 2682701..2684074 + 457 150397780 - Smed_2582 - N-formimino-L-glutamate deiminase 2553 59.03 0 2684111..2685145 + 344 150397781 - Smed_2583 - substrate-binding region of ABC-type glycine betaine transport system 2554 63.64 0 2685277..2686134 + 285 150397782 - Smed_2584 - binding-protein-dependent transport systems inner membrane component 2555 60.02 0 2686127..2686954 + 275 150397783 - Smed_2585 - ABC transporter related 2556 65.28 +1 2686947..2688461 + 504 150397784 - Smed_2586 - histidine ammonia-lyase 2557 62.14 0 2688482..2689807 + 441 150397785 - Smed_2587 - nucleoside recognition domain-containing protein 2558 63.64 0 2689795..2690388 + 197 150397786 - Smed_2588 - hypothetical protein 2559 63.68 0 2690391..2690624 - 77 150397787 - Smed_2589 - hypothetical protein 2560 57.67 -1 2690747..2690935 - 62 150397788 - Smed_2590 - hypothetical protein 2561 56.22 -1 2691164..2691364 + 66 150397789 - Smed_2591 - putative signal peptide protein 2562 57.21 -1 2691445..2691645 - 66 150397790 - Smed_2592 - hypothetical protein 2563 56.41 -1 2691627..2691860 - 77 150397791 - Smed_2593 - hypothetical protein 2564 61.77 0 2692054..2692380 - 108 150397792 - Smed_2594 - putative signal peptide protein 2565 59.68 0 2692638..2693081 - 147 150397793 - Smed_2595 - endoribonuclease L-PSP 2566 63.05 0 2693314..2694087 + 257 150397794 - Smed_2596 - TetR family transcriptional regulator 2567 60.56 0 2694095..2694994 - 299 150397795 - Smed_2597 - beta-lactamase-like protein 2568 58.42 -1 2695030..2695575 - 181 150397796 - Smed_2598 - isochorismatase hydrolase 2569 56.69 -1 2695628..2696659 + 343 150397797 - Smed_2599 - AraC family transcriptional regulator 2570 65.16 +1 2697759..2698955 - 398 150397798 trmU Smed_2600 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 2571 62.10 0 2699229..2699972 - 247 150397799 - Smed_2601 - regulatory protein LuxR 2572 61.23 0 2700351..2700626 + 91 150397800 - Smed_2602 - hypothetical protein 2573 64.18 0 2700827..2701108 + 93 150397801 - Smed_2603 - hypothetical protein 2574 57.55 -1 2701219..2701569 - 116 150397802 - Smed_2604 - hypothetical protein 2575 57.98 -1 2702115..2702816 + 233 150397803 - Smed_2605 - two component transcriptional regulator 2576 56.00 -2 2703008..2703307 + 99 150397804 - Smed_2606 - hypothetical protein 2577 60.06 0 2703353..2703715 - 120 150397805 - Smed_2607 - response regulator receiver protein 2578 62.44 0 2703926..2704588 - 220 150397806 - Smed_2608 - hypothetical protein 2579 62.33 0 2704955..2705554 + 199 150397807 - Smed_2609 - hypothetical protein 2580 63.90 0 2705707..2706789 + 360 150397808 - Smed_2610 - hypothetical protein 2581 66.91 +1 2706857..2707684 - 275 150397809 - Smed_2611 - tRNA/rRNA methyltransferase (SpoU) 2582 65.62 +1 2707689..2708072 - 127 150397810 - Smed_2612 - hypothetical protein 2583 64.15 0 2708116..2709147 + 343 150397811 - Smed_2613 - RluA family pseudouridine synthase 2584 59.27 0 2709345..2710250 + 301 150397812 - Smed_2614 - RNA polymerase factor sigma-32 2585 65.36 +1 2710335..2712635 - 766 150397813 - Smed_2615 - hypothetical protein 61.69 MEAN 2.82 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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