IslandPathversion 1.0

IslandPath Analysis: Sinorhizobium medicae WSM419



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.69 STD DEV: 2.82
Sinorhizobium medicae WSM419, complete genome - 1..3781904
3529 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2452	 58.21	-1	2563919..2564923	-	334	150397680	-	Smed_2480	-	TRAP dicarboxylate transporter, DctP subunit
2453	 60.09	0	2564962..2566239	-	425	150397681	-	Smed_2481	-	TRAP dicarboxylate transporter, DctM subunit
2454	 58.24	-1	2566239..2566772	-	177	150397682	-	Smed_2482	-	tripartite ATP-independent periplasmic transporter DctQ
2455	 61.83	0	2566791..2567969	-	392	150397683	-	Smed_2483	-	hypothetical protein
2456	 61.65	0	2568133..2568849	-	238	150397684	-	Smed_2484	-	GntR domain-containing protein
2457	 61.32	0	2568934..2570373	-	479	150397685	-	Smed_2485	-	FAD linked oxidase domain-containing protein
2458	 62.91	0	2570565..2571548	+	327	150397686	-	Smed_2486	-	NAD-dependent epimerase/dehydratase
2459	 65.40	+1	2571560..2572426	+	288	150397687	-	Smed_2487	-	2-hydroxy-3-oxopropionate reductase
2460	 63.35	0	2572435..2574213	+	592	150397688	-	Smed_2488	-	dihydroxy-acid dehydratase
2461	 61.50	0	2574943..2575329	+	128	150397689	-	Smed_2490	-	putative peptide synthetase protein
2462	 56.47	-1	2575326..2576276	+	316	150397690	-	Smed_2491	-	periplasmic binding protein
2463	 58.94	0	2576278..2577300	+	340	150397691	-	Smed_2492	-	transport system permease protein
2464	 59.82	0	2577300..2578277	+	325	150397692	-	Smed_2493	-	transport system permease protein
2465	 57.62	-1	2578270..2579076	+	268	150397693	-	Smed_2494	-	ABC transporter related
2466	 56.52	-1	2579143..2581281	-	712	150397694	-	Smed_2495	-	TonB-dependent receptor
2467	 56.29	-1	2581432..2582433	-	333	150397695	-	Smed_2496	-	siderophore-interacting protein
2468	 62.34	0	2590558..2592498	+	646	150397696	-	Smed_2498	-	peptidase M23B
2469	 62.06	0	2592576..2595182	-	868	150397697	-	Smed_2499	-	ATPase
2470	 65.15	+1	2595468..2596127	-	219	150397698	-	Smed_2500	-	hypothetical protein
2471	 62.23	0	2596562..2597440	-	292	150397699	-	Smed_2501	-	HemK family modification methylase
2472	 62.42	0	2597447..2598529	-	360	150397700	prfA	Smed_2502	-	peptide chain release factor 1
2473	 62.96	0	2598598..2600865	-	755	150397701	-	Smed_2503	-	phosphoenolpyruvate-protein phosphotransferase PtsP
2474	 61.10	0	2601055..2602329	-	424	150397702	-	Smed_2504	-	aspartate kinase
2475	 61.21	0	2602890..2604410	+	506	150397703	-	Smed_2505	-	ABC transporter related
2476	 61.85	0	2604673..2605419	+	248	150397704	-	Smed_2506	-	3-demethylubiquinone-9 3-methyltransferase
2477	 60.61	0	2605432..2605860	-	142	150397705	-	Smed_2507	-	hypothetical protein
2478	 63.64	0	2605857..2606714	-	285	150397706	-	Smed_2508	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
2479	 57.75	-1	2606815..2607072	-	85	150397707	-	Smed_2509	-	glutaredoxin 3
2480	 63.45	0	2607124..2607900	-	258	150397708	-	Smed_2510	-	phosphoribosyltransferase
2481	 64.44	0	2608061..2608960	+	299	150397709	-	Smed_2511	-	hypothetical protein
2482	 59.77	0	2608970..2609143	-	57	150397710	-	Smed_2512	-	Flp/Fap pilin component
2483	 59.19	0	2609237..2609557	-	106	150397711	-	Smed_2513	-	hypothetical protein
2484	 64.22	0	2609970..2610377	-	135	150397712	-	Smed_2514	-	NUDIX hydrolase
2485	 62.73	0	2610383..2611195	-	270	150397713	-	Smed_2515	-	GCN5-related N-acetyltransferase
2486	 65.06	+1	2611277..2612518	-	413	150397714	argJ	Smed_2516	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
2487	 59.42	0	2612691..2613545	-	284	150397715	-	Smed_2517	-	PpiC-type peptidyl-prolyl cis-trans isomerase
2488	 61.28	0	2613792..2616503	+	903	150397716	-	Smed_2518	-	preprotein translocase subunit SecA
2489	 63.92	0	2616683..2617882	+	399	150397717	-	Smed_2519	-	Bcr/CflA subfamily drug resistance transporter
2490	 62.81	0	2618009..2619433	+	474	150397718	-	Smed_2520	-	polysaccharide biosynthesis protein
2491	 63.06	0	2619430..2620704	+	424	150397719	-	Smed_2521	-	hypothetical protein
2492	 64.72	+1	2620720..2622363	-	547	150397720	-	Smed_2522	-	AMP-dependent synthetase and ligase
2493	 63.62	0	2623349..2623873	+	174	150397721	-	Smed_2523	-	hypothetical protein
2494	 56.99	-1	2623891..2624541	-	216	150397722	-	Smed_2524	-	HNH endonuclease
2495	 66.20	+1	2624555..2625202	-	215	150397723	-	Smed_2525	-	HhH-GPD family protein
2496	 63.98	0	2625257..2626150	+	297	150397724	-	Smed_2526	-	glutamyl-Q tRNA(Asp) synthetase
2497	 60.25	0	2626168..2627040	-	290	150397725	-	Smed_2527	-	putative ribonuclease BN
2498	 64.27	0	2627206..2628039	+	277	150397726	-	Smed_2528	-	short chain dehydrogenase
2499	 63.24	0	2628062..2628265	+	67	150397727	-	Smed_2529	-	hypothetical protein
2500	 63.21	0	2628334..2628912	+	192	150397728	-	Smed_2530	-	ATP--cobalamin adenosyltransferase
2501	 60.73	0	2629037..2629828	+	263	150397729	-	Smed_2531	-	rhomboid family protein
2502	 63.20	0	2630141..2630890	+	249	150397730	-	Smed_2532	-	electron transfer flavoprotein alpha/beta-subunit
2503	 64.84	+1	2630914..2631843	+	309	150397731	-	Smed_2533	-	electron transfer flavoprotein alpha subunit
2504	 60.25	0	2631987..2632859	+	290	150397732	-	Smed_2534	-	3-hydroxybutyryl-CoA dehydrogenase
2505	 65.19	+1	2632897..2633571	-	224	150397733	-	Smed_2535	-	redoxin domain-containing protein
2506	 63.96	0	2633597..2635000	+	467	150397734	-	Smed_2536	-	argininosuccinate lyase
2507	 64.62	+1	2635220..2635414	+	64	150397735	-	Smed_2537	-	hypothetical protein
2508	 61.70	0	2635429..2636697	+	422	150397736	-	Smed_2538	-	diaminopimelate decarboxylase
2509	 64.26	0	2636838..2639492	+	884	150397737	-	Smed_2539	-	hypothetical protein
2510	 62.50	0	2639706..2640065	-	119	150397738	-	Smed_2540	-	response regulator receiver protein
2511	 58.61	-1	2640280..2640825	-	181	150397739	-	Smed_2541	-	hypoxanthine phosphoribosyltransferase
2512	 65.00	+1	2641074..2641493	-	139	150397740	-	Smed_2542	-	hypothetical protein
2513	 61.11	0	2641960..2642643	+	227	150397741	-	Smed_2543	-	cell division ATP-binding protein FtsE
2514	 62.65	0	2642636..2643655	+	339	150397742	-	Smed_2544	-	hypothetical protein
2515	 61.66	0	2643761..2644459	+	232	150397743	-	Smed_2545	-	hypothetical protein
2516	 61.92	0	2644593..2645372	+	259	150397744	-	Smed_2546	-	phospholipid/glycerol acyltransferase
2517	 63.16	0	2645393..2645962	-	189	150397745	-	Smed_2547	-	ChaC family protein
2518	 62.82	0	2646218..2647231	+	337	150397746	-	Smed_2548	-	hypothetical protein
2519	 62.46	0	2647319..2648245	-	308	150397747	-	Smed_2549	-	cyclohexadienyl dehydrogenase
2520	 61.61	0	2648242..2649348	-	368	150397748	-	Smed_2550	-	histidinol-phosphate aminotransferase
2521	 64.14	0	2649454..2650206	-	250	150397749	-	Smed_2551	-	methyltransferase type 11
2522	 60.83	0	2650305..2651075	+	256	150397750	-	Smed_2552	-	hydroxyacylglutathione hydrolase
2523	 66.02	+1	2651075..2651539	+	154	150397751	-	Smed_2553	-	hypothetical protein
2524	 61.95	0	2651603..2652493	-	296	150397752	-	Smed_2554	-	hypothetical protein
2525	 59.72	0	2652630..2653406	-	258	150397753	-	Smed_2555	-	putative signal peptide protein
2526	 63.23	0	2653835..2654125	+	96	150397754	rpmB	Smed_2556	-	50S ribosomal protein L28
2527	 61.97	0	2654261..2654899	+	212	150397755	-	Smed_2557	-	hypothetical protein
2528	 62.44	0	2654946..2655938	-	330	150397756	-	Smed_2558	-	putative signal peptide protein
2529	 63.77	0	2656021..2657916	-	631	150397757	-	Smed_2559	-	cobalt chelatase, pCobT subunit
2530	 60.54	0	2658056..2659051	-	331	150397758	-	Smed_2560	-	cobalt chelatase, pCobS small subunit
2531	 61.32	0	2659127..2659762	-	211	150397759	-	Smed_2561	-	heat shock protein DnaJ domain-containing protein
2532	 64.18	0	2659903..2660184	+	93	150397760	-	Smed_2562	-	BolA family protein
2533	 59.92	0	2660206..2661510	-	434	150397761	-	Smed_2563	-	hypothetical protein
2534	 63.78	0	2661507..2662649	-	380	150397762	aroB	Smed_2564	-	3-dehydroquinate synthase
2535	 62.18	0	2662646..2663224	-	192	150397763	-	Smed_2565	-	shikimate kinase
2536	 62.00	0	2663552..2663701	+	49	150397764	-	Smed_2566	-	putative signal peptide protein
2537	 62.95	0	2663698..2664639	+	313	150397765	xerD	Smed_2567	-	site-specific tyrosine recombinase XerD
2538	 60.17	0	2664703..2665656	+	317	150397766	-	Smed_2568	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
2539	 61.20	0	2665898..2667343	+	481	150397767	-	Smed_2569	-	hypothetical protein
2540	 56.96	-1	2667343..2667579	+	78	150397768	-	Smed_2570	-	SirA family protein
2541	 64.75	+1	2667649..2668797	-	382	150397769	-	Smed_2571	-	cobalamin synthesis protein P47K
2542	 61.98	0	2668810..2669940	-	376	150397770	-	Smed_2572	-	Serine-type D-Ala-D-Ala carboxypeptidase
2543	 64.00	0	2670146..2671309	+	387	150397771	-	Smed_2573	-	amidohydrolase
2544	 61.29	0	2671333..2671797	+	154	150397772	-	Smed_2574	-	AsnC family transcriptional regulator
2545	 61.88	0	2671821..2672864	-	347	150397773	-	Smed_2575	-	alcohol dehydrogenase
2546	 62.31	0	2673083..2674024	+	313	150397774	-	Smed_2576	-	AraC-like transcriptional regulator
2547	 61.45	0	2674077..2674574	-	165	150397775	-	Smed_2577	-	AsnC family transcriptional regulator
2548	 64.25	0	2674641..2677697	+	1018	150397776	-	Smed_2578	-	hypothetical protein
2549	 63.30	0	2677799..2678809	+	336	150397777	-	Smed_2579	-	extracellular solute-binding protein
2550	 65.27	+1	2678871..2681798	-	975	150397778	-	Smed_2580	-	hypothetical protein
2551	 61.83	0	2681831..2682574	-	247	150397779	-	Smed_2581	-	GntR family transcriptional regulator
61.69	MEAN

2.82	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.