IslandPathversion 1.0

IslandPath Analysis: Sinorhizobium medicae WSM419



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.69 STD DEV: 2.82
Sinorhizobium medicae WSM419, complete genome - 1..3781904
3529 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2221	 66.18	+1	2326652..2327476	-	274	150397449	-	Smed_2249	-	pyrroline-5-carboxylate reductase
2222	 58.08	-1	2327478..2327978	-	166	150397450	-	Smed_2250	-	hypothetical protein
2223	 64.60	+1	2328434..2328724	-	96	150397451	-	Smed_2251	-	hypothetical protein
2224	 62.87	0	2328999..2329841	+	280	150397452	-	Smed_2252	-	prolipoprotein diacylglyceryl transferase
2225	 63.32	0	2329853..2330956	+	367	150397453	-	Smed_2253	-	hypothetical protein
2226	 63.77	0	2331084..2331878	+	264	150397454	-	Smed_2254	-	hypothetical protein
2227	 61.89	0	2331880..2333031	+	383	150397455	-	Smed_2255	-	peptidase M24
2228	 65.87	+1	2333289..2334167	+	292	150397456	-	Smed_2256	-	hypothetical protein
2229	 61.31	0	2334452..2335384	+	310	150397457	-	Smed_2257	-	ribose-phosphate pyrophosphokinase
2230	 64.50	0	2335436..2336266	-	276	150397458	-	Smed_2258	-	hypothetical protein
2231	 63.25	0	2336339..2336719	-	126	150397459	-	Smed_2259	-	hypothetical protein
2232	 62.09	0	2336801..2338309	-	502	150397460	-	Smed_2260	-	aldehyde dehydrogenase
2233	 66.88	+1	2338448..2339404	-	318	150397461	-	Smed_2261	-	Fis family transcriptional regulator
2234	 65.45	+1	2339662..2340894	+	410	150397462	-	Smed_2262	-	benzoate transporter
2235	 60.10	0	2341107..2341730	+	207	150397463	-	Smed_2263	-	50S ribosomal protein L25/general stress protein Ctc
2236	 59.84	0	2342028..2342774	+	248	150397464	-	Smed_2264	-	peptidyl-tRNA hydrolase
2237	 58.82	-1	2342797..2343102	-	101	150397465	clpS	Smed_2265	-	ATP-dependent Clp protease adaptor
2238	 61.87	0	2343331..2344434	+	367	150397466	-	Smed_2266	-	translation-associated GTPase
2239	 61.28	0	2344465..2345523	-	352	150397467	-	Smed_2267	-	hypothetical protein
2240	 60.09	0	2345792..2346247	+	151	150397468	-	Smed_2268	-	dehydratase
2241	 63.06	0	2346244..2346714	+	156	150397469	-	Smed_2269	-	dehydratase
2242	 60.22	0	2346736..2347278	-	180	150397470	-	Smed_2270	-	adenine phosphoribosyltransferase
2243	 60.22	0	2347452..2347637	+	61	150397471	-	Smed_2271	-	hypothetical protein
2244	 64.05	0	2347670..2348929	-	419	150397472	-	Smed_2272	-	polynucleotide adenylyltransferase region
2245	 60.66	0	2348926..2349558	-	210	150397473	-	Smed_2273	-	NUDIX hydrolase
2246	 62.98	0	2349555..2350178	-	207	150397474	-	Smed_2274	-	hypothetical protein
2247	 65.38	+1	2350541..2351554	+	337	150397475	-	Smed_2275	-	ATPase
2248	 64.93	+1	2351558..2352478	+	306	150397476	-	Smed_2276	-	hypothetical protein
2249	 65.46	+1	2352475..2355288	+	937	150397477	-	Smed_2277	-	hypothetical protein
2250	 64.54	+1	2355299..2357368	+	689	150397478	-	Smed_2278	-	hypothetical protein
2251	 64.43	0	2357347..2357838	+	163	150397479	-	Smed_2279	-	GCN5-related N-acetyltransferase
2252	 65.95	+1	2357839..2358399	-	186	150397480	-	Smed_2280	-	GCN5-related N-acetyltransferase
2253	 59.42	0	2358655..2359647	+	330	150397481	-	Smed_2281	-	putative glutathione S-transferase
2254	 65.65	+1	2359658..2360149	-	163	150397482	-	Smed_2282	-	NUDIX hydrolase
2255	 63.01	0	2360230..2361132	+	300	150397483	-	Smed_2283	-	metallophosphoesterase
2256	 59.65	0	2361258..2361827	+	189	150397484	-	Smed_2284	-	ECF subfamily RNA polymerase sigma-24 factor
2257	 62.32	0	2361831..2362658	+	275	150397485	-	Smed_2285	-	putative transmembrane anti-sigma factor
2258	 61.11	0	2363011..2363262	-	83	150397486	-	Smed_2286	-	transcription factor
2259	 59.56	0	2363312..2365042	-	576	150397487	-	Smed_2287	-	2-isopropylmalate synthase
2260	 63.51	0	2365059..2365280	-	73	150397488	-	Smed_2288	-	hypothetical protein
2261	 59.18	0	2365456..2366043	-	195	150397489	-	Smed_2289	-	ATP-dependent Clp protease proteolytic subunit
2262	 63.04	0	2366234..2366812	+	192	150397490	-	Smed_2290	-	HupE/UreJ protein
2263	 60.95	0	2366812..2367318	+	168	150397491	-	Smed_2291	-	GCN5-related N-acetyltransferase
2264	 64.11	0	2367285..2368106	-	273	150397492	-	Smed_2292	-	aminoglycoside phosphotransferase
2265	 61.94	0	2368135..2368599	-	154	150397493	-	Smed_2293	-	7-cyano-7-deazaguanine reductase
2266	 63.30	0	2368596..2369516	-	306	150397494	-	Smed_2294	-	cation diffusion facilitator family transporter
2267	 61.96	0	2369676..2371865	-	729	150397495	-	Smed_2295	-	anthranilate synthase
2268	 61.22	0	2372143..2374347	-	734	150397496	-	Smed_2296	-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor
2269	 63.70	0	2374629..2375471	+	280	150397497	-	Smed_2297	-	extensin family protein
2270	 61.33	0	2375519..2377222	-	567	150397498	-	Smed_2298	-	formate--tetrahydrofolate ligase
2271	 62.24	0	2377283..2378503	-	406	150397499	-	Smed_2299	-	hypothetical protein
2272	 58.84	-1	2378507..2379796	-	429	150397500	-	Smed_2300	-	hypothetical protein
2273	 58.05	-1	2379793..2380233	-	146	150397501	-	Smed_2301	-	hypothetical protein
2274	 62.44	0	2380411..2382327	-	638	150397502	-	Smed_2302	-	hypothetical protein
2275	 60.49	0	2382331..2383479	-	382	150397503	-	Smed_2303	-	hypothetical protein
2276	 58.31	-1	2383541..2384629	-	362	150397504	-	Smed_2304	-	hypothetical protein
2277	 60.08	0	2384946..2385902	+	318	150397505	-	Smed_2305	-	substrate-binding region of ABC-type glycine betaine transport system
2278	 61.47	0	2386055..2386900	+	281	150397506	-	Smed_2306	-	binding-protein-dependent transport systems inner membrane component
2279	 60.76	0	2386897..2387946	+	349	150397507	-	Smed_2307	-	ABC transporter related
2280	 63.84	0	2387981..2388724	+	247	150397508	-	Smed_2308	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
2281	 54.20	-2	2388843..2389187	+	114	150397509	-	Smed_2309	-	regulatory protein ArsR
2282	 61.49	0	2389280..2389858	+	192	150397510	-	Smed_2310	-	hypothetical protein
2283	 60.41	0	2389957..2391042	-	361	150397511	-	Smed_2311	-	ABC transporter related
2284	 61.57	0	2391046..2392242	-	398	150397512	-	Smed_2312	-	hypothetical protein
2285	 57.77	-1	2392269..2393111	-	280	150397513	-	Smed_2313	-	binding-protein-dependent transport systems inner membrane component
2286	 59.49	0	2393104..2394036	-	310	150397514	-	Smed_2314	-	binding-protein-dependent transport systems inner membrane component
2287	 62.06	0	2394167..2395534	-	455	150397515	-	Smed_2315	-	extracellular solute-binding protein
2288	 62.39	0	2395596..2396600	-	334	150397516	-	Smed_2316	-	alanine racemase
2289	 61.25	0	2396850..2398178	+	442	150397517	-	Smed_2317	-	beta amino acid--pyruvate transaminase
2290	 62.49	0	2398265..2399962	+	565	150397518	-	Smed_2318	-	adenine deaminase
2291	 57.55	-1	2400098..2400481	-	127	150397519	-	Smed_2319	-	XRE family plasmid maintenance system antidote protein
2292	 62.29	0	2400629..2402272	-	547	150397520	-	Smed_2320	-	alpha amylase catalytic region
2293	 64.20	0	2402407..2403339	+	310	150397521	-	Smed_2321	-	ribokinase-like domain-containing protein
2294	 64.84	+1	2403389..2404156	-	255	150397522	-	Smed_2322	-	ABC transporter related
2295	 62.95	0	2404153..2404986	-	277	150397523	-	Smed_2323	-	ABC transporter related
2296	 66.04	+1	2404983..2405942	-	319	150397524	-	Smed_2324	-	binding-protein-dependent transport systems inner membrane component
2297	 62.16	0	2405939..2406982	-	347	150397525	-	Smed_2325	-	binding-protein-dependent transport systems inner membrane component
2298	 58.99	0	2407024..2408664	-	546	150397526	-	Smed_2326	-	extracellular solute-binding protein
2299	 63.47	0	2408712..2409773	-	353	150397527	-	Smed_2327	-	peptidase M19 renal dipeptidase
2300	 61.11	0	2409962..2410303	-	113	150397528	-	Smed_2328	-	small multidrug resistance protein
2301	 62.75	0	2410347..2410907	-	186	150397529	-	Smed_2329	-	TetR family transcriptional regulator
2302	 63.87	0	2411046..2411438	+	130	150397530	-	Smed_2330	-	globin
2303	 66.94	+1	2411444..2411812	+	122	150397531	-	Smed_2331	-	hypothetical protein
2304	 56.83	-1	2411904..2412218	-	104	150397532	-	Smed_2332	-	antibiotic biosynthesis monooxygenase
2305	 61.86	0	2412223..2412513	-	96	150397533	-	Smed_2333	-	hypothetical protein
2306	 64.55	+1	2412573..2412998	-	141	150397534	-	Smed_2334	-	hypothetical protein
2307	 62.03	0	2413322..2414248	-	308	150397535	-	Smed_2335	-	TonB family protein
2308	 58.39	-1	2414302..2414736	-	144	150397536	-	Smed_2336	-	hypothetical protein
2309	 60.64	0	2414863..2415111	+	82	150397537	-	Smed_2337	-	hemin uptake protein-like protein
2310	 62.17	0	2415116..2416183	+	355	150397538	-	Smed_2338	-	hemin-degrading family protein
2311	 64.56	+1	2416320..2417270	+	316	150397539	-	Smed_2339	-	periplasmic binding protein
2312	 67.29	+1	2417275..2418390	+	371	150397540	-	Smed_2340	-	transport system permease protein
2313	 62.99	0	2418399..2419187	+	262	150397541	-	Smed_2341	-	hemin importer ATP-binding subunit
2314	 63.09	0	2419384..2419746	+	120	150397542	-	Smed_2342	-	hypothetical protein
2315	 65.97	+1	2419789..2420220	+	143	150397543	-	Smed_2343	-	hypothetical protein
2316	 63.07	0	2420305..2421807	-	500	150397544	-	Smed_2344	-	signal transduction histidine kinase
2317	 59.82	0	2422053..2422607	-	184	150397545	-	Smed_2345	-	RNA polymerase sigma factor
2318	 53.33	-2	2422615..2422809	-	64	150397546	-	Smed_2346	-	hypothetical protein
2319	 59.75	0	2422944..2423738	+	264	150397547	-	Smed_2347	-	two-component response regulator
2320	 56.08	-1	2423913..2424488	-	191	150397548	-	Smed_2348	-	hypothetical protein
61.69	MEAN

2.82	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.