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Sinorhizobium medicae WSM419, complete genome - 1..3781904 3529 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2102 62.70 0 2194319..2195704 - 461 150397330 - Smed_2129 - aldehyde dehydrogenase 2103 60.73 0 2195785..2197149 - 454 150397331 - Smed_2130 - glutamine synthetase catalytic region 2104 60.40 0 2197238..2198785 - 515 150397332 - Smed_2131 - amino acid permease-associated region 2105 60.72 0 2198892..2199665 - 257 150397333 - Smed_2132 - N-formylglutamate amidohydrolase 2106 61.21 0 2199873..2200751 + 292 150397334 - Smed_2133 - RpiR family transcriptional regulator 2107 63.01 0 2200942..2202036 + 364 150397335 - Smed_2134 - extracellular solute-binding protein 2108 59.75 0 2202112..2202993 + 293 150397336 - Smed_2135 - binding-protein-dependent transport systems inner membrane component 2109 59.32 0 2202990..2203778 + 262 150397337 - Smed_2136 - binding-protein-dependent transport systems inner membrane component 2110 60.64 0 2203783..2204844 + 353 150397338 - Smed_2137 - ABC transporter related 2111 60.61 0 2205159..2205686 + 175 150397339 - Smed_2138 - riboflavin synthase subunit beta 2112 61.69 0 2205851..2206735 + 294 150397340 - Smed_2139 - helix-turn-helix domain-containing protein 2113 59.38 0 2206897..2209119 + 740 150397341 - Smed_2140 - TonB-dependent siderophore receptor 2114 61.46 0 2209241..2210374 + 377 150397342 - Smed_2141 - peptidase M24 2115 58.74 -1 2210400..2211497 - 365 150397343 - Smed_2142 - ABC transporter related 2116 58.55 -1 2211507..2213453 - 648 150397344 - Smed_2143 - hypothetical protein 2117 56.98 -1 2213481..2214347 - 288 150397345 - Smed_2144 - binding-protein-dependent transport systems inner membrane component 2118 61.16 0 2214344..2215432 - 362 150397346 - Smed_2145 - binding-protein-dependent transport systems inner membrane component 2119 57.99 -1 2215395..2216639 - 414 150397347 - Smed_2146 - extracellular solute-binding protein 2120 58.36 -1 2216810..2217832 + 340 150397348 - Smed_2147 - periplasmic binding protein/LacI transcriptional regulator 2121 61.27 0 2217863..2218510 + 215 150397349 - Smed_2148 - hypothetical protein 2122 61.19 0 2218647..2219084 - 145 150397350 - Smed_2149 - ribose-5-phosphate isomerase B 2123 63.80 0 2219125..2219892 - 255 150397351 tpiA Smed_2150 - triosephosphate isomerase 2124 60.69 0 2219889..2220674 - 261 150397352 - Smed_2151 - DeoR family transcriptional regulator 2125 59.89 0 2220779..2221708 - 309 150397353 - Smed_2152 - xylose isomerase domain-containing protein 2126 63.48 0 2221722..2222567 - 281 150397354 - Smed_2153 - HAD family hydrolase 2127 67.29 +1 2222564..2223847 - 427 150397355 - Smed_2154 - carbohydrate kinase FGGY 2128 64.30 0 2223844..2224899 - 351 150397356 - Smed_2155 - class II aldolase/adducin family protein 2129 63.00 0 2224913..2226466 - 517 150397357 - Smed_2156 - glycerol-3-phosphate dehydrogenase 2130 62.48 0 2226471..2227139 - 222 150397358 - Smed_2157 - class II aldolase/adducin family protein 2131 62.91 0 2227149..2228186 - 345 150397359 - Smed_2158 - D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding 2132 64.45 0 2228183..2229760 - 525 150397360 - Smed_2159 - carbohydrate kinase FGGY 2133 62.04 0 2229760..2230884 - 374 150397361 - Smed_2160 - ABC transporter related 2134 64.34 0 2230881..2231999 - 372 150397362 - Smed_2161 - ABC transporter related 2135 61.89 0 2232004..2232861 - 285 150397363 - Smed_2162 - binding-protein-dependent transport systems inner membrane component 2136 60.61 0 2232873..2233796 - 307 150397364 - Smed_2163 - binding-protein-dependent transport systems inner membrane component 2137 60.30 0 2233979..2235424 - 481 150397365 - Smed_2164 - extracellular solute-binding protein 2138 62.81 0 2235539..2236576 - 345 150397366 - Smed_2165 - DeoR family transcriptional regulator 2139 61.69 0 2236676..2237419 - 247 150397367 - Smed_2166 - response regulator receiver protein 2140 64.81 +1 2237663..2238742 + 359 150397368 - Smed_2167 - spermidine/putrescine ABC transporter ATPase subunit 2141 60.98 0 2238792..2239952 + 386 150397369 - Smed_2168 - putative periplasmic binding ABC transporter protein 2142 62.95 0 2240015..2240929 + 304 150397370 - Smed_2169 - binding-protein-dependent transport systems inner membrane component 2143 62.76 0 2240929..2241747 + 272 150397371 - Smed_2170 - binding-protein-dependent transport systems inner membrane component 2144 64.44 0 2241752..2242513 + 253 150397372 - Smed_2171 - short-chain dehydrogenase/reductase SDR 2145 62.83 0 2242627..2243616 - 329 150397373 - Smed_2172 - helix-turn-helix domain-containing protein 2146 63.01 0 2243708..2244610 + 300 150397374 - Smed_2173 - hypothetical protein 2147 62.98 0 2244802..2246292 + 496 150397375 - Smed_2174 - bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase 2148 62.19 0 2246380..2247540 + 386 150397376 - Smed_2175 - acyl-CoA dehydrogenase domain-containing protein 2149 65.36 +1 2247644..2249707 + 687 150397377 - Smed_2176 - CoA-binding domain-containing protein 2150 63.86 0 2249712..2250494 + 260 150397378 - Smed_2177 - carnitinyl-CoA dehydratase 2151 61.07 0 2250833..2252422 + 529 150397379 - Smed_2178 - extracellular solute-binding protein 2152 62.16 0 2252422..2253531 + 369 150397380 - Smed_2179 - binding-protein-dependent transport systems inner membrane component 2153 62.68 0 2253528..2254355 + 275 150397381 - Smed_2180 - binding-protein-dependent transport systems inner membrane component 2154 62.93 0 2254348..2255979 + 543 150397382 - Smed_2181 - ABC transporter related 2155 61.13 0 2256125..2256919 - 264 150397383 - Smed_2182 - putative transcriptional regulator 2156 61.76 0 2257047..2258636 + 529 150397384 - Smed_2183 - extracellular solute-binding protein 2157 63.71 0 2258719..2260716 + 665 150397385 - Smed_2184 - peptidase S15 2158 66.13 +1 2260768..2261706 - 312 150397386 - Smed_2185 - alpha/beta hydrolase domain-containing protein 2159 64.58 +1 2261833..2262741 + 302 150397387 - Smed_2186 - LysR family transcriptional regulator 2160 60.03 0 2262860..2264020 + 386 150397388 - Smed_2187 - extracellular solute-binding protein 2161 64.06 0 2264202..2265197 + 331 150397389 - Smed_2188 - ABC transporter related 2162 60.25 0 2265194..2266144 + 316 150397390 - Smed_2189 - binding-protein-dependent transport systems inner membrane component 2163 64.22 0 2266134..2266949 + 271 150397391 - Smed_2190 - binding-protein-dependent transport systems inner membrane component 2164 63.31 0 2266976..2268403 + 475 150397392 - Smed_2191 - gamma-aminobutyraldehyde dehydrogenase 2165 58.48 -1 2268614..2270788 + 724 150397393 - Smed_2192 - TonB-dependent siderophore receptor 2166 65.21 +1 2270794..2271549 + 251 150397394 - Smed_2193 - ferric iron reductase 2167 62.96 0 2271552..2272685 + 377 150397395 - Smed_2194 - periplasmic binding protein 2168 63.79 0 2272802..2273323 + 173 150397396 - Smed_2195 - hypothetical protein 2169 64.47 0 2273420..2274967 - 515 150397397 - Smed_2196 - trimethylamine methyltransferase 2170 62.70 0 2275109..2277556 - 815 150397398 - Smed_2197 - FAD dependent oxidoreductase 2171 62.05 0 2277553..2280000 - 815 150397399 - Smed_2198 - FAD dependent oxidoreductase 2172 62.17 0 2280123..2280968 + 281 150397400 - Smed_2199 - LysR family transcriptional regulator 2173 63.51 0 2281006..2282685 - 559 150397401 - Smed_2200 - hypothetical protein 2174 62.23 0 2282883..2284166 + 427 150397402 - Smed_2201 - methionine gamma-lyase 2175 62.29 0 2284287..2284583 - 98 150397403 - Smed_2202 - helix-turn-helix domain-containing protein 2176 59.72 0 2285035..2285394 - 119 150397404 - Smed_2204 - glyoxalase/bleomycin resistance protein/dioxygenase 2177 61.08 0 2285391..2285999 - 202 150397405 - Smed_2205 - TetR family transcriptional regulator 2178 64.27 0 2286083..2286874 + 263 150397406 - Smed_2206 - enoyl-CoA hydratase 2179 62.92 0 2286888..2287367 - 159 150397407 - Smed_2207 - hypothetical protein 2180 64.84 +1 2287417..2288730 - 437 150397408 - Smed_2208 - hypothetical protein 2181 62.39 0 2288962..2289756 + 264 150397409 - Smed_2209 - hypothetical protein 2182 56.76 -1 2289863..2290084 - 73 150397410 - Smed_2210 - hypothetical protein 2183 65.35 +1 2290220..2291434 - 404 150397411 - Smed_2211 - hypothetical protein 2184 57.69 -1 2291431..2291664 - 77 150397412 - Smed_2212 - hypothetical protein 2185 63.02 0 2291664..2293502 - 612 150397413 - Smed_2213 - SARP family transcriptional regulator 2186 61.87 0 2293869..2294660 + 263 150397414 - Smed_2214 - aminoglycoside N(3')-acetyltransferase 2187 58.33 -1 2294701..2294976 - 91 150397415 - Smed_2215 - XRE family transcriptional regulator 2188 62.89 0 2295456..2296250 + 264 150397416 - Smed_2216 - hypothetical protein 2189 68.36 +2 2296443..2296796 - 117 150397417 - Smed_2217 - putative signal peptide protein 2190 62.96 0 2296935..2297339 - 134 150397418 - Smed_2218 - hypothetical protein 2191 62.88 0 2297433..2297855 - 140 150397419 - Smed_2219 - hypothetical protein 2192 60.45 0 2297891..2298244 - 117 150397420 - Smed_2220 - hypothetical protein 2193 61.58 0 2298358..2298927 - 189 150397421 - Smed_2221 - putative transmembrane protein 2194 60.88 0 2299152..2299445 - 97 150397422 - Smed_2222 - GYD family protein 2195 60.49 0 2299716..2301770 - 684 150397423 - Smed_2223 - RNA polymerase sigma factor RpoD 2196 60.10 0 2302218..2303252 - 344 150397424 tdh Smed_2224 - L-threonine 3-dehydrogenase 2197 62.12 0 2303293..2304480 - 395 150397425 - Smed_2225 - 2-amino-3-ketobutyrate coenzyme A ligase 2198 64.09 0 2304702..2306645 - 647 150397426 - Smed_2226 - ATP-dependent DNA helicase RecQ 2199 64.43 0 2306655..2308670 - 671 150397427 dnaG Smed_2227 - DNA primase 2200 60.00 0 2308865..2309314 - 149 150397428 - Smed_2228 - GatB/Yqey domain-containing protein 2201 63.76 0 2309639..2310844 + 401 150397429 - Smed_2229 - carbamoyl phosphate synthase small subunit 61.69 MEAN 2.82 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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