IslandPathversion 1.0

IslandPath Analysis: Sinorhizobium medicae WSM419



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.69 STD DEV: 2.82
Sinorhizobium medicae WSM419, complete genome - 1..3781904
3529 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2005	 63.45	0	2080474..2080908	+	144	150397233	-	Smed_2032	-	hypothetical protein
2006	 62.87	0	2080945..2084079	-	1044	150397234	-	Smed_2033	-	acriflavin resistance protein
2007	 65.10	+1	2084076..2085287	-	403	150397235	-	Smed_2034	-	RND family efflux transporter MFP subunit
2008	 64.36	0	2085609..2086430	+	273	150397236	-	Smed_2035	-	cyclase family protein
2009	 59.03	0	2086450..2086881	+	143	150397237	-	Smed_2036	-	alkylhydroperoxidase
2010	 63.34	0	2086986..2089538	+	850	150397238	-	Smed_2037	-	UvrD/REP helicase
2011	 60.72	0	2089642..2090751	-	369	150397239	-	Smed_2038	-	oxidoreductase domain-containing protein
2012	 64.84	+1	2091126..2092163	+	345	150397240	-	Smed_2039	-	regulatory protein LacI
2013	 63.70	0	2092186..2093262	+	358	150397241	-	Smed_2040	-	hypothetical protein
2014	 58.20	-1	2093525..2094469	+	314	150397242	-	Smed_2041	-	ABC transporter binding protein
2015	 58.66	-1	2094538..2095524	+	328	150397243	-	Smed_2042	-	monosaccharide-transporting ATPase
2016	 59.51	0	2095527..2096294	+	255	150397244	-	Smed_2043	-	ABC transporter related
2017	 59.52	0	2096440..2096901	-	153	150397245	-	Smed_2044	-	GCN5-related N-acetyltransferase
2018	 63.24	0	2096979..2097650	-	223	150397246	-	Smed_2045	-	phosphoribosyltransferase
2019	 63.10	0	2097741..2099057	+	438	150397247	-	Smed_2046	-	diguanylate cyclase
2020	 57.43	-1	2099167..2099664	+	165	150397248	-	Smed_2047	-	CreA family protein
2021	 58.06	-1	2099865..2100224	-	119	150397249	-	Smed_2048	-	putative signal peptide protein
2022	 60.90	0	2100466..2100864	-	132	150397250	-	Smed_2049	-	putative signal peptide protein
2023	 59.35	0	2101188..2101652	-	154	150397251	-	Smed_2050	-	putative CheW protein
2024	 63.32	0	2101655..2103808	-	717	150397252	-	Smed_2051	-	methyl-accepting chemotaxis sensory transducer
2025	 59.75	0	2103990..2104148	+	52	150397253	-	Smed_2052	-	putative signal peptide protein
2026	 57.83	-1	2104296..2104895	+	199	150397254	-	Smed_2053	-	electron transport protein SCO1/SenC
2027	 61.52	0	2105039..2105932	+	297	150397255	prmA	Smed_2054	-	ribosomal protein L11 methyltransferase
2028	 64.54	+1	2106475..2108310	+	611	150397256	-	Smed_2055	-	peptidase M24
2029	 60.00	0	2108593..2108832	-	79	150397257	-	Smed_2056	-	putative signal peptide protein
2030	 61.81	0	2108947..2109255	-	102	150397258	-	Smed_2057	-	branched-chain amino acid transport
2031	 60.39	0	2109259..2109975	-	238	150397259	-	Smed_2058	-	AzlC family protein
2032	 63.50	0	2110193..2111014	-	273	150397260	panB	Smed_2059	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
2033	 62.44	0	2111017..2111892	-	291	150397261	panC	Smed_2060	-	pantoate--beta-alanine ligase
2034	 58.77	-1	2112254..2112658	+	134	150397262	-	Smed_2061	-	glyoxalase/bleomycin resistance protein/dioxygenase
2035	 56.36	-1	2112943..2113854	+	303	150397263	-	Smed_2062	-	binding-protein-dependent transport systems inner membrane component
2036	 59.64	0	2113851..2114732	+	293	150397264	-	Smed_2063	-	binding-protein-dependent transport systems inner membrane component
2037	 61.11	0	2114764..2116113	+	449	150397265	-	Smed_2064	-	extracellular solute-binding protein
2038	 60.47	0	2116263..2117891	+	542	150397266	-	Smed_2065	-	sulfatase
2039	 58.95	0	2117962..2119011	+	349	150397267	-	Smed_2066	-	ABC transporter related
2040	 59.70	0	2118992..2119393	+	133	150397268	-	Smed_2067	-	RpiR family transcriptional regulator
2041	 56.64	-1	2119512..2120987	-	491	150397269	-	Smed_2068	-	sulfatase
2042	 56.88	-1	2121042..2122022	+	326	150397270	-	Smed_2069	-	LysR family transcriptional regulator
2043	 63.56	0	2122076..2124229	-	717	150397271	ligA	Smed_2070	-	NAD-dependent DNA ligase LigA
2044	 64.46	0	2124395..2126068	-	557	150397272	-	Smed_2071	-	DNA repair protein RecN
2045	 58.59	-1	2126104..2126970	-	288	150397273	-	Smed_2072	-	hypothetical protein
2046	 59.96	0	2127249..2128202	-	317	150397274	lpxC	Smed_2073	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
2047	 65.43	+1	2128628..2130400	-	590	150397275	-	Smed_2074	-	cell division protein FtsZ
2048	 64.79	+1	2130495..2131823	-	442	150397276	-	Smed_2075	-	cell division protein FtsA
2049	 63.55	0	2131820..2132749	-	309	150397277	-	Smed_2076	-	cell division protein FtsQ
2050	 59.44	0	2132737..2133663	-	308	150397278	ddl	Smed_2077	-	D-alanine--D-alanine ligase
2051	 64.05	0	2133977..2134663	-	228	150397279	-	Smed_2078	-	aquaporin Z
2052	 62.93	0	2135064..2136374	+	436	150397280	-	Smed_2079	-	major facilitator superfamily metabolite/H(+) symporter
2053	 60.82	0	2136445..2137419	-	324	150397281	murB	Smed_2080	-	UDP-N-acetylenolpyruvoylglucosamine reductase
2054	 60.88	0	2137416..2138831	-	471	150397282	murC	Smed_2081	-	UDP-N-acetylmuramate--L-alanine ligase
2055	 64.27	0	2138828..2139952	-	374	150397283	murG	Smed_2082	-	N-acetylglucosaminyl transferase
2056	 61.56	0	2139970..2141124	-	384	150397284	-	Smed_2083	-	cell division protein FtsW
2057	 64.08	0	2141181..2142572	-	463	150397285	murD	Smed_2084	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
2058	 59.95	0	2142578..2143678	-	366	150397286	mraY	Smed_2085	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
2059	 63.46	0	2143909..2145342	-	477	150397287	-	Smed_2086	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
2060	 64.89	+1	2145344..2146804	-	486	150397288	murE	Smed_2087	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
2061	 61.46	0	2146974..2148722	-	582	150397289	-	Smed_2088	-	peptidoglycan glycosyltransferase
2062	 59.90	0	2148722..2149120	-	132	150397290	-	Smed_2089	-	hypothetical protein
2063	 62.17	0	2149127..2150215	-	362	150397291	mraW	Smed_2090	-	S-adenosyl-methyltransferase MraW
2064	 61.90	0	2150269..2150709	-	146	150397292	-	Smed_2091	-	cell division protein MraZ
2065	 61.32	0	2151601..2152929	-	442	150397293	-	Smed_2092	-	D-serine dehydratase
2066	 64.51	0	2152980..2154230	-	416	150397294	-	Smed_2093	-	D-amino acid dehydrogenase small subunit
2067	 59.75	0	2154290..2155186	-	298	150397295	purU	Smed_2094	-	formyltetrahydrofolate deformylase
2068	 62.64	0	2155208..2156101	-	297	150397296	-	Smed_2095	-	methenyltetrahydrofolate cyclohydrolase
2069	 61.42	0	2156225..2157502	-	425	150397297	-	Smed_2096	-	glycine hydroxymethyltransferase
2070	 60.48	0	2157638..2158558	+	306	150397298	-	Smed_2097	-	LysR family transcriptional regulator
2071	 59.69	0	2158833..2159864	+	343	150397299	-	Smed_2098	-	extracellular solute-binding protein
2072	 60.38	0	2159934..2161142	+	402	150397300	-	Smed_2099	-	binding-protein-dependent transport systems inner membrane component
2073	 61.27	0	2161142..2162272	+	376	150397301	-	Smed_2100	-	polar amino acid ABC transporter, inner membrane subunit
2074	 58.50	-1	2162302..2163060	+	252	150397302	-	Smed_2101	-	ABC transporter related
2075	 64.73	+1	2163188..2164375	-	395	150397303	-	Smed_2102	-	FAD dependent oxidoreductase
2076	 56.67	-1	2164510..2165049	-	179	150397304	-	Smed_2103	-	lytic transglycosylase catalytic
2077	 61.05	0	2165276..2166040	-	254	150397305	-	Smed_2104	-	N-acetylmuramoyl-L-alanine amidase
2078	 59.32	0	2166037..2166744	-	235	150397306	-	Smed_2105	-	heat shock protein DnaJ domain-containing protein
2079	 62.30	0	2167101..2168315	+	404	150397307	-	Smed_2106	-	pyrophosphate--fructose-6-phosphate 1-phosphotransferase
2080	 61.77	0	2168451..2169083	+	210	150397308	-	Smed_2107	-	lysine exporter protein LysE/YggA
2081	 61.78	0	2169202..2170203	+	333	150397309	-	Smed_2108	-	lytic transglycosylase catalytic
2082	 63.22	0	2170245..2171606	-	453	150397310	-	Smed_2109	-	beta-lactamase
2083	 61.92	0	2171811..2173073	+	420	150397311	-	Smed_2110	-	hypothetical protein
2084	 62.37	0	2173070..2173744	+	224	150397312	-	Smed_2111	-	methyltransferase type 11
2085	 59.54	0	2173945..2174730	+	261	150397313	-	Smed_2112	-	glycoside hydrolase family protein
2086	 64.45	0	2174863..2176080	+	405	150397314	-	Smed_2113	-	lytic murein transglycosylase
2087	 63.07	0	2176299..2177243	+	314	150397315	-	Smed_2114	-	hypothetical protein
2088	 62.10	0	2177773..2178714	-	313	150397316	-	Smed_2115	-	5,10-methylenetetrahydrofolate reductase
2089	 63.54	0	2178717..2179739	-	340	150397317	-	Smed_2116	-	methyltransferase type 11
2090	 61.39	0	2180219..2181868	-	549	150397318	-	Smed_2117	-	putative ABC transporter ATP-binding protein
2091	 62.26	0	2181993..2182763	-	256	150397319	-	Smed_2118	-	putative ribonuclease protein
2092	 64.23	0	2182964..2183908	+	314	150397320	-	Smed_2119	-	hypothetical protein
2093	 61.22	0	2183905..2184858	+	317	150397321	-	Smed_2120	-	hypothetical protein
2094	 65.63	+1	2184895..2186541	+	548	150397322	-	Smed_2121	-	acetolactate synthase 2 catalytic subunit
2095	 59.91	0	2186879..2187811	+	310	150397323	-	Smed_2122	-	transposase IS116/IS110/IS902 family protein
2096	 63.42	0	2187984..2188322	-	112	150397324	-	Smed_2123	-	hypothetical protein
2097	 65.70	+1	2188394..2189323	-	309	150397325	-	Smed_2124	-	hypothetical protein
2098	 62.50	0	2189393..2190784	+	463	150397326	-	Smed_2125	-	ErfK/YbiS/YcfS/YnhG family protein
2099	 64.81	+1	2190938..2192227	+	429	150397327	-	Smed_2126	-	FAD dependent oxidoreductase
2100	 63.74	0	2192252..2192968	-	238	150397328	-	Smed_2127	-	cobyrinic acid ac-diamide synthase
2101	 64.14	0	2193177..2194322	-	381	150397329	-	Smed_2128	-	iron-containing alcohol dehydrogenase
2102	 62.70	0	2194319..2195704	-	461	150397330	-	Smed_2129	-	aldehyde dehydrogenase
2103	 60.73	0	2195785..2197149	-	454	150397331	-	Smed_2130	-	glutamine synthetase catalytic region
2104	 60.40	0	2197238..2198785	-	515	150397332	-	Smed_2131	-	amino acid permease-associated region
61.69	MEAN

2.82	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.