IslandPathversion 1.0

IslandPath Analysis: Sinorhizobium medicae WSM419



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.69 STD DEV: 2.82
Sinorhizobium medicae WSM419, complete genome - 1..3781904
3529 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1772	 58.94	0	1880912..1881571	+	219	150397000	-	Smed_1797	-	deaminase-reductase domain-containing protein
1773	 59.85	0	1881683..1881946	-	87	150397001	-	Smed_1798	-	putative signal peptide protein
1774	 61.19	0	1882263..1882901	+	212	150397002	-	Smed_1799	-	integral membrane protein TerC
1775	 60.62	0	1883047..1885626	-	859	150397003	-	Smed_1800	-	MscS mechanosensitive ion channel
1776	 58.44	-1	1885756..1886217	-	153	150397004	-	Smed_1801	-	glutathione-dependent formaldehyde-activating GFA
1777	 59.04	0	1886411..1886974	-	187	150397005	-	Smed_1802	-	hypothetical protein
1778	 62.73	0	1887117..1888892	-	591	150397006	-	Smed_1803	-	TrkA domain-containing protein
1779	 58.87	0	1889425..1889706	+	93	150397007	-	Smed_1804	-	putative transmembrane protein
1780	 63.86	0	1889744..1890028	+	94	150397008	-	Smed_1805	-	putative transmembrane protein
1781	 62.24	0	1890139..1890477	-	112	150397009	-	Smed_1806	-	hypothetical protein
1782	 62.93	0	1890470..1890763	-	97	150397010	-	Smed_1807	-	hypothetical protein
1783	 64.81	+1	1890841..1891650	-	269	150397011	-	Smed_1808	-	putative transmembrane protein
1784	 49.72	-2	1892013..1892714	-	233	150397012	-	Smed_1809	-	FkbM family methyltransferase
1785	 58.51	-1	1892794..1893345	-	183	150397013	-	Smed_1810	-	hypothetical protein
1786	 53.09	-2	1893332..1893493	-	53	150397014	-	Smed_1811	-	hypothetical protein
1787	 55.28	-2	1893940..1894554	+	204	150397015	-	Smed_1812	-	hypothetical protein
1788	 55.04	-2	1894543..1895058	-	171	150397016	-	Smed_1813	-	hypothetical protein
1789	 60.73	0	1895059..1896558	-	499	150397017	-	Smed_1814	-	hypothetical protein
1790	 67.21	+1	1896639..1897745	-	368	150397018	-	Smed_1815	-	hypothetical protein
1791	 65.54	+1	1897745..1898098	-	117	150397019	-	Smed_1816	-	hypothetical protein
1792	 61.10	0	1898095..1899693	-	532	150397020	-	Smed_1817	-	hypothetical protein
1793	 62.12	0	1899697..1900158	-	153	150397021	-	Smed_1818	-	hypothetical protein
1794	 63.57	0	1900158..1901774	-	538	150397022	-	Smed_1819	-	hypothetical protein
1795	 63.18	0	1901771..1902373	-	200	150397023	-	Smed_1820	-	hypothetical protein
1796	 60.35	0	1902370..1903731	-	453	150397024	-	Smed_1821	-	hypothetical protein
1797	 64.01	0	1903728..1904330	-	200	150397025	-	Smed_1822	-	hypothetical protein
1798	 59.88	0	1904327..1904650	-	107	150397026	-	Smed_1823	-	hypothetical protein
1799	 62.87	0	1904647..1905015	-	122	150397027	-	Smed_1824	-	hypothetical protein
1800	 56.85	-1	1905096..1905839	+	247	150397028	-	Smed_1825	-	hypothetical protein
1801	 59.06	0	1906331..1906777	+	148	150397029	-	Smed_1826	-	hypothetical protein
1802	 55.46	-2	1906844..1907530	-	228	150397030	-	Smed_1827	-	hypothetical protein
1803	 58.03	-1	1907668..1908327	-	219	150397031	-	Smed_1828	-	hypothetical protein
1804	 57.84	-1	1908615..1909328	-	237	150397032	-	Smed_1829	-	hypothetical protein
1805	 60.84	0	1909594..1910589	-	331	150397033	-	Smed_1830	-	hypothetical protein
1806	 61.30	0	1910674..1911642	-	322	150397034	-	Smed_1831	-	hypothetical protein
1807	 62.08	0	1911767..1912006	-	79	150397035	-	Smed_1832	-	hypothetical protein
1808	 51.75	-2	1912116..1912229	-	37	150397036	-	Smed_1833	-	hypothetical protein
1809	 51.16	-2	1912483..1912914	-	143	150397037	-	Smed_1834	-	hypothetical protein
1810	 60.03	0	1912911..1913603	-	230	150397038	-	Smed_1835	-	hypothetical protein
1811	 41.12	-2	1913678..1914088	-	136	150397039	-	Smed_1836	-	hypothetical protein
1812	 54.92	-2	1914448..1915077	-	209	150397040	-	Smed_1837	-	hypothetical protein
1813	 63.99	0	1915074..1917125	-	683	150397041	-	Smed_1838	-	hypothetical protein
1814	 64.02	0	1917125..1918558	-	477	150397042	-	Smed_1839	-	hypothetical protein
1815	 60.23	0	1918701..1919042	+	113	150397043	-	Smed_1840	-	glutathione-dependent formaldehyde-activating GFA
1816	 57.69	-1	1919070..1919225	-	51	150397044	-	Smed_1841	-	hypothetical protein
1817	 55.63	-2	1919514..1919966	+	150	150397045	-	Smed_1842	-	putative signal peptide protein
1818	 66.67	+1	1919969..1920349	-	126	150397046	-	Smed_1843	-	hypothetical protein
1819	 59.59	0	1920524..1920961	+	145	150397047	-	Smed_1844	-	hypothetical protein
1820	 53.82	-2	1921133..1921708	-	191	150397048	-	Smed_1845	-	hypothetical protein
1821	 62.05	0	1922170..1922970	-	266	150397049	-	Smed_1846	-	IstB ATP binding domain-containing protein
1822	 62.79	0	1922970..1924259	-	429	150397050	-	Smed_1847	-	integrase catalytic region
1823	 60.02	0	1924338..1925270	+	310	150397051	-	Smed_1848	-	transposase IS116/IS110/IS902 family protein
1824	 57.21	-1	1926154..1926354	+	66	150397052	-	Smed_1849	-	putative transmembrane protein
1825	 56.30	-1	1926367..1926501	+	44	150397053	-	Smed_1850	-	hypothetical protein
1826	 59.26	0	1926722..1927126	-	134	150397054	-	Smed_1851	-	BA14K family protein
1827	 60.40	0	1927331..1927936	-	201	150397055	-	Smed_1852	-	hypothetical protein
1828	 63.76	0	1928076..1928591	-	171	150397056	-	Smed_1853	-	chromosomal replication initiator DnaA domain-containing protein
1829	 58.26	-1	1928687..1929412	+	241	150397057	-	Smed_1854	-	putative phage repressor
1830	 62.12	0	1929631..1929960	+	109	150397058	-	Smed_1855	-	hypothetical protein
1831	 58.78	-1	1929960..1930238	+	92	150397059	-	Smed_1856	-	putative signal peptide protein
1832	 61.85	0	1930258..1930983	-	241	150397060	-	Smed_1857	-	pentapeptide repeat-containing protein
1833	 65.77	+1	1931196..1932197	-	333	150397061	-	Smed_1858	-	import inner membrane translocase subunit Tim44
1834	 58.95	0	1932386..1933357	-	323	150397062	-	Smed_1859	-	hypothetical protein
1835	 59.60	0	1933544..1933939	-	131	150397063	-	Smed_1860	-	hypothetical protein
1836	 59.29	0	1934795..1935133	+	112	150397064	-	Smed_1862	-	thioredoxin domain-containing protein
1837	 57.32	-1	1936118..1936855	+	245	150397065	-	Smed_1863	-	necrosis-inducing protein
1838	 56.42	-1	1937283..1938443	+	386	150397066	-	Smed_1864	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
1839	 62.02	0	1939190..1939555	-	121	150397067	-	Smed_1865	-	hypothetical protein
1840	 60.23	0	1939781..1940044	-	87	150397068	-	Smed_1866	-	hypothetical protein
1841	 63.26	0	1940044..1941012	-	322	150397069	-	Smed_1867	-	chitinase-like protein
1842	 58.90	0	1941196..1941414	+	72	150397070	-	Smed_1868	-	hypothetical protein
1843	 57.81	-1	1941627..1941818	+	63	150397071	-	Smed_1869	-	hypothetical protein
1844	 63.84	0	1942098..1942451	-	117	150397072	-	Smed_1870	-	hypothetical protein
1845	 62.64	0	1942438..1942785	-	115	150397073	-	Smed_1871	-	hypothetical protein
1846	 61.33	0	1942785..1943909	-	374	150397074	-	Smed_1872	-	hypothetical protein
1847	 55.12	-2	1943921..1945435	-	504	150397075	-	Smed_1873	-	hypothetical protein
1848	 63.09	0	1945435..1948092	-	885	150397076	-	Smed_1874	-	hypothetical protein
1849	 66.91	+1	1948099..1948503	-	134	150397077	-	Smed_1875	-	hypothetical protein
1850	 54.95	-2	1948572..1948844	+	90	150397078	-	Smed_1876	-	hypothetical protein
1851	 60.24	0	1948991..1949581	-	196	150397079	-	Smed_1877	-	hypothetical protein
1852	 57.03	-1	1949578..1950231	-	217	150397080	-	Smed_1878	-	hypothetical protein
1853	 51.67	-2	1950328..1950687	+	119	150397081	-	Smed_1879	-	hypothetical protein
1854	 60.90	0	1950684..1952780	-	698	150397082	-	Smed_1880	-	hypothetical protein
1855	 55.86	-2	1952802..1953236	+	144	150397083	-	Smed_1881	-	hypothetical protein
1856	 59.49	0	1953323..1953559	-	78	150397084	-	Smed_1882	-	hypothetical protein
1857	 58.71	-1	1953655..1954056	-	133	150397085	-	Smed_1883	-	hypothetical protein
1858	 57.61	-1	1954071..1954556	-	161	150397086	-	Smed_1884	-	hypothetical protein
1859	 60.33	0	1954558..1954983	-	141	150397087	-	Smed_1885	-	hypothetical protein
1860	 60.40	0	1955190..1955636	-	148	150397088	-	Smed_1886	-	hypothetical protein
1861	 63.87	0	1955636..1956673	-	345	150397089	-	Smed_1887	-	hypothetical protein
1862	 60.93	0	1956974..1957339	-	121	150397090	-	Smed_1888	-	hypothetical protein
1863	 51.23	-2	1957419..1957580	+	53	150397091	-	Smed_1889	-	hypothetical protein
1864	 61.62	0	1957590..1958084	-	164	150397092	-	Smed_1890	-	hypothetical protein
1865	 63.38	0	1958115..1958570	-	151	150397093	-	Smed_1891	-	hypothetical protein
1866	 63.00	0	1958584..1959537	-	317	150397094	-	Smed_1892	-	hypothetical protein
1867	 61.42	0	1959552..1959989	-	145	150397095	-	Smed_1893	-	hypothetical protein
1868	 62.29	0	1959989..1961131	-	380	150397096	-	Smed_1894	-	hypothetical protein
1869	 61.73	0	1961527..1962903	-	458	150397097	-	Smed_1895	-	HI1409 family phage-associated protein
1870	 60.51	0	1962912..1964243	-	443	150397098	-	Smed_1896	-	hypothetical protein
1871	 56.89	-1	1964247..1964747	-	166	150397099	-	Smed_1897	-	phage terminase small subunit
61.69	MEAN

2.82	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.