IslandPathversion 1.0

IslandPath Analysis: Sinorhizobium medicae WSM419



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.69 STD DEV: 2.82
Sinorhizobium medicae WSM419, complete genome - 1..3781904
3529 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1516	 62.53	0	1620257..1621126	-	289	150396744	-	Smed_1534	-	dihydropteroate synthase
1517	 60.06	0	1621269..1621949	+	226	150396745	-	Smed_1535	-	hypothetical protein
1518	 59.81	0	1622486..1622806	-	106	150396746	-	Smed_1536	-	ferredoxin
1519	 60.70	0	1623096..1623464	-	122	150396747	-	Smed_1537	-	Hpt domain-containing protein
1520	 64.43	0	1623967..1630125	+	2052	150396748	-	Smed_1538	-	chemotaxis sensory transducer
1521	 60.34	0	1630779..1631648	-	289	150396749	-	Smed_1539	-	cytochrome c1
1522	 58.39	-1	1631680..1632960	-	426	150396750	-	Smed_1540	-	cytochrome b/b6 domain-containing protein
1523	 62.00	0	1632975..1633553	-	192	150396751	-	Smed_1541	-	ubiquinol-cytochrome c reductase, iron-sulfur subunit
1524	 61.58	0	1633870..1635735	-	621	150396752	-	Smed_1542	-	ABC transporter related
1525	 59.60	0	1635852..1637705	-	617	150396753	-	Smed_1543	-	ABC transporter related
1526	 61.04	0	1638184..1638645	+	153	150396754	-	Smed_1544	-	tRNA/rRNA methyltransferase (SpoU)
1527	 60.46	0	1638701..1639312	-	203	150396755	-	Smed_1545	-	NADPH-dependent FMN reductase
1528	 62.76	0	1639352..1639837	+	161	150396756	-	Smed_1546	-	MerR family transcriptional regulator
1529	 63.38	0	1639842..1641026	-	394	150396757	-	Smed_1547	-	major facilitator transporter
1530	 65.90	+1	1641173..1641433	-	86	150396758	-	Smed_1548	-	hypothetical protein
1531	 61.18	0	1641637..1642548	+	303	150396759	-	Smed_1549	-	coproporphyrinogen III oxidase
1532	 62.72	0	1642633..1642911	+	92	150396760	-	Smed_1550	-	transport-associated
1533	 60.98	0	1643085..1643699	-	204	150396761	-	Smed_1551	-	hypothetical protein
1534	 57.08	-1	1643779..1645155	-	458	150396762	-	Smed_1552	-	hypothetical protein
1535	 60.35	0	1645242..1646048	-	268	150396763	-	Smed_1553	-	ABC transporter related
1536	 62.37	0	1646059..1647198	-	379	150396764	-	Smed_1554	-	hypothetical protein
1537	 63.52	0	1647384..1648367	+	327	150396765	-	Smed_1555	-	mandelate racemase/muconate lactonizing protein
1538	 60.95	0	1648319..1649542	-	407	150396766	-	Smed_1556	-	major facilitator transporter
1539	 59.95	0	1649680..1650513	-	277	150396767	-	Smed_1557	-	metallophosphoesterase
1540	 62.26	0	1650759..1653071	+	770	150396768	-	Smed_1558	-	malic enzyme
1541	 59.78	0	1653276..1654016	+	246	150396769	-	Smed_1559	-	regulatory protein LuxR
1542	 60.47	0	1654170..1654814	+	214	150396770	-	Smed_1560	-	autoinducer synthesis protein
1543	 64.64	+1	1655000..1656133	+	377	150396771	-	Smed_1561	-	putative signal peptide protein
1544	 61.35	0	1656248..1656943	-	231	150396772	-	Smed_1562	-	cob(II)yrinic acid a,c-diamide reductase
1545	 62.77	0	1657242..1658063	-	273	150396773	-	Smed_1563	-	short chain dehydrogenase
1546	 62.46	0	1658206..1659939	-	577	150396774	-	Smed_1564	-	ankyrin
1547	 61.50	0	1660932..1662614	-	560	150396775	nadE	Smed_1566	-	NAD synthetase
1548	 58.36	-1	1662853..1664790	+	645	150396776	-	Smed_1567	-	sulfatase
1549	 63.03	0	1665165..1666127	+	320	150396777	-	Smed_1568	-	hypothetical protein
1550	 60.54	0	1666193..1666600	-	135	150396778	-	Smed_1569	-	glutathione-dependent formaldehyde-activating GFA
1551	 62.30	0	1666800..1668173	-	457	150396779	-	Smed_1570	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1552	 60.92	0	1668407..1669798	-	463	150396780	-	Smed_1571	-	glutathione reductase
1553	 59.48	0	1669977..1670519	-	180	150396781	-	Smed_1572	-	hypothetical protein
1554	 61.35	0	1670631..1671326	-	231	150396782	-	Smed_1573	-	ribose-5-phosphate isomerase A
1555	 62.57	0	1671545..1672228	+	227	150396783	-	Smed_1574	-	phosphoglycolate phosphatase
1556	 62.39	0	1672262..1674157	-	631	150396784	-	Smed_1575	-	hypothetical protein
1557	 61.28	0	1674597..1676045	+	482	150396785	fumC	Smed_1576	-	fumarate hydratase
1558	 62.56	0	1676091..1676699	-	202	150396786	-	Smed_1577	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
1559	 64.27	0	1676793..1677710	-	305	150396787	-	Smed_1578	-	hypothetical protein
1560	 59.39	0	1677725..1678246	+	173	150396788	-	Smed_1579	-	MarR family transcriptional regulator
1561	 62.13	0	1678289..1678663	-	124	150396789	-	Smed_1580	-	hypothetical protein
1562	 47.80	-2	1678660..1678818	-	52	150396790	-	Smed_1581	-	hypothetical protein
1563	 60.48	0	1678822..1679871	+	349	150396791	moaA	Smed_1582	-	molybdenum cofactor biosynthesis protein A
1564	 63.48	0	1680111..1681019	+	302	150396792	-	Smed_1583	-	hypothetical protein
1565	 63.48	0	1681033..1681692	+	219	150396793	mobA	Smed_1584	-	molybdopterin-guanine dinucleotide biosynthesis protein A
1566	 63.43	0	1681689..1682213	+	174	150396794	-	Smed_1585	-	molybdopterin-guanine dinucleotide biosynthesis protein B
1567	 61.59	0	1682346..1683488	-	380	150396795	-	Smed_1586	-	Sel1 domain-containing protein
1568	 63.66	0	1683609..1685771	-	720	150396796	-	Smed_1587	-	OmpA/MotB domain-containing protein
1569	 58.24	-1	1686274..1687056	+	260	150396797	-	Smed_1588	-	extracellular solute-binding protein
1570	 60.57	0	1687251..1688054	+	267	150396798	-	Smed_1589	-	polar amino acid ABC transporter, inner membrane subunit
1571	 61.61	0	1688051..1688881	+	276	150396799	-	Smed_1590	-	polar amino acid ABC transporter, inner membrane subunit
1572	 55.06	-2	1689052..1689318	+	88	150396800	-	Smed_1591	-	Usg family protein
1573	 62.55	0	1689350..1690054	-	234	150396801	-	Smed_1592	-	short-chain dehydrogenase/reductase SDR
1574	 62.15	0	1690167..1690853	-	228	150396802	-	Smed_1593	-	hypothetical protein
1575	 61.45	0	1691161..1691985	+	274	150396803	-	Smed_1594	-	methyltransferase type 12
1576	 61.15	0	1692037..1692906	+	289	150396804	-	Smed_1595	-	6-phosphogluconate dehydrogenase NAD-binding
1577	 64.38	0	1692903..1693601	+	232	150396805	-	Smed_1596	-	hypothetical protein
1578	 57.46	-1	1693695..1694183	-	162	150396806	-	Smed_1597	-	AsnC family transcriptional regulator
1579	 62.84	0	1694250..1694903	-	217	150396807	-	Smed_1598	-	uracil-DNA glycosylase superfamily protein
1580	 65.14	+1	1694872..1695459	-	195	150396808	-	Smed_1599	-	nuclease
1581	 60.61	0	1695735..1697270	+	511	150396809	-	Smed_1600	-	integral membrane sensor signal transduction histidine kinase
1582	 60.13	0	1697549..1698481	+	310	150396810	-	Smed_1601	-	transposase IS116/IS110/IS902 family protein
1583	 59.63	0	1698534..1699016	-	160	150396811	-	Smed_1602	-	diacylglycerol kinase
1584	 65.59	+1	1699083..1700099	-	338	150396812	cobT	Smed_1603	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
1585	 68.31	+2	1700237..1701025	+	262	150396813	cobS	Smed_1604	-	cobalamin synthase
1586	 63.06	0	1701071..1701292	+	73	150396814	-	Smed_1605	-	hypothetical protein
1587	 62.39	0	1701289..1701990	+	233	150396815	-	Smed_1606	-	putative transmembrane signal peptide protein
1588	 54.86	-2	1701998..1702759	-	253	150396816	-	Smed_1607	-	ABC-2 type transporter
1589	 59.44	0	1702756..1703682	-	308	150396817	-	Smed_1608	-	ABC transporter related
1590	 59.76	0	1703855..1704187	-	110	150396818	-	Smed_1609	-	regulatory protein ArsR
1591	 60.38	0	1704197..1705087	-	296	150396819	-	Smed_1610	-	beta-lactamase domain-containing protein
1592	 62.15	0	1705251..1706423	-	390	150396820	-	Smed_1611	-	extensin family protein
1593	 67.57	+2	1706706..1707257	-	183	150396821	-	Smed_1612	-	protease inhibitor Kazal-type
1594	 63.13	0	1707483..1709294	-	603	150396822	-	Smed_1613	-	methyl-accepting chemotaxis sensory transducer
1595	 63.85	0	1709504..1709893	+	129	150396823	-	Smed_1614	-	thioesterase superfamily protein
1596	 55.50	-2	1709905..1710495	+	196	150396824	-	Smed_1615	-	hypothetical protein
1597	 57.06	-1	1710533..1710886	-	117	150396825	-	Smed_1616	-	hypothetical protein
1598	 63.36	0	1711062..1713998	+	978	150396826	-	Smed_1617	-	excinuclease ABC subunit B
1599	 64.81	+1	1714214..1714861	+	215	150396827	-	Smed_1618	-	glycine rich transmembrane protein
1600	 61.49	0	1714949..1715566	-	205	150396828	-	Smed_1619	-	heat shock protein DnaJ domain-containing protein
1601	 58.22	-1	1716066..1716278	+	70	150396829	-	Smed_1620	-	cold-shock DNA-binding domain-containing protein
1602	 62.18	0	1716358..1717515	-	385	150396830	-	Smed_1621	-	tRNA-dihydrouridine synthase A
1603	 57.09	-1	1717608..1718693	+	361	150396831	-	Smed_1622	-	phage integrase family protein
1604	 55.64	-2	1719116..1720348	-	410	150396832	-	Smed_1624	-	hypothetical protein
1605	 56.38	-1	1720454..1720735	-	93	150396833	-	Smed_1625	-	hypothetical protein
1606	 64.10	0	1721674..1721868	+	64	150396834	-	Smed_1627	-	hypothetical protein
1607	 57.45	-1	1721977..1722486	-	169	150396835	-	Smed_1628	-	hypothetical protein
1608	 59.10	0	1723189..1724139	-	316	150396836	-	Smed_1630	-	hypothetical protein
1609	 55.96	-2	1724202..1724864	-	220	150396837	-	Smed_1631	-	hypothetical protein
1610	 55.04	-2	1725869..1726573	+	234	150396838	-	Smed_1632	-	thioredoxin domain-containing protein
1611	 55.37	-2	1727568..1728284	+	238	150396839	-	Smed_1633	-	necrosis-inducing protein
1612	 61.47	0	1728565..1728891	-	108	150396840	-	Smed_1634	-	hypothetical protein
1613	 63.73	0	1729258..1730073	-	271	150396841	-	Smed_1636	-	putative transmembrane protein
1614	 64.60	+1	1730335..1730673	-	112	150396842	-	Smed_1637	-	hypothetical protein
1615	 62.93	0	1730660..1731007	-	115	150396843	-	Smed_1638	-	hypothetical protein
61.69	MEAN

2.82	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.