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Sinorhizobium medicae WSM419, complete genome - 1..3781904 3529 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1506 62.69 0 1609421..1610350 + 309 150396734 - Smed_1524 - indigoidine synthase A family protein 1507 62.05 0 1610442..1613060 - 872 150396735 - Smed_1525 - multi-sensor hybrid histidine kinase 1508 66.47 +1 1613425..1614417 + 330 150396736 - Smed_1526 - putative CheA signal transduction histidine kinase 1509 58.57 -1 1614545..1614964 - 139 150396737 - Smed_1527 - TraR/DksA family transcriptional regulator 1510 63.52 0 1615370..1615909 + 179 150396738 - Smed_1528 - putative phosphohistidine phosphatase, SixA 1511 63.47 0 1616076..1617575 + 499 150396739 - Smed_1529 - protein of unknown function DUF463 YcjX family protein 1512 65.38 +1 1617572..1618657 + 361 150396740 - Smed_1530 - hypothetical protein 1513 60.69 0 1618777..1619328 + 183 150396741 - Smed_1531 - putative signal peptide protein 1514 60.57 0 1619378..1619902 - 174 150396742 - Smed_1532 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase 1515 60.22 0 1619889..1620260 - 123 150396743 - Smed_1533 - dihydroneopterin aldolase 1516 62.53 0 1620257..1621126 - 289 150396744 - Smed_1534 - dihydropteroate synthase 1517 60.06 0 1621269..1621949 + 226 150396745 - Smed_1535 - hypothetical protein 1518 59.81 0 1622486..1622806 - 106 150396746 - Smed_1536 - ferredoxin 1519 60.70 0 1623096..1623464 - 122 150396747 - Smed_1537 - Hpt domain-containing protein 1520 64.43 0 1623967..1630125 + 2052 150396748 - Smed_1538 - chemotaxis sensory transducer 1521 60.34 0 1630779..1631648 - 289 150396749 - Smed_1539 - cytochrome c1 1522 58.39 -1 1631680..1632960 - 426 150396750 - Smed_1540 - cytochrome b/b6 domain-containing protein 1523 62.00 0 1632975..1633553 - 192 150396751 - Smed_1541 - ubiquinol-cytochrome c reductase, iron-sulfur subunit 1524 61.58 0 1633870..1635735 - 621 150396752 - Smed_1542 - ABC transporter related 1525 59.60 0 1635852..1637705 - 617 150396753 - Smed_1543 - ABC transporter related 1526 61.04 0 1638184..1638645 + 153 150396754 - Smed_1544 - tRNA/rRNA methyltransferase (SpoU) 1527 60.46 0 1638701..1639312 - 203 150396755 - Smed_1545 - NADPH-dependent FMN reductase 1528 62.76 0 1639352..1639837 + 161 150396756 - Smed_1546 - MerR family transcriptional regulator 1529 63.38 0 1639842..1641026 - 394 150396757 - Smed_1547 - major facilitator transporter 1530 65.90 +1 1641173..1641433 - 86 150396758 - Smed_1548 - hypothetical protein 1531 61.18 0 1641637..1642548 + 303 150396759 - Smed_1549 - coproporphyrinogen III oxidase 1532 62.72 0 1642633..1642911 + 92 150396760 - Smed_1550 - transport-associated 1533 60.98 0 1643085..1643699 - 204 150396761 - Smed_1551 - hypothetical protein 1534 57.08 -1 1643779..1645155 - 458 150396762 - Smed_1552 - hypothetical protein 1535 60.35 0 1645242..1646048 - 268 150396763 - Smed_1553 - ABC transporter related 1536 62.37 0 1646059..1647198 - 379 150396764 - Smed_1554 - hypothetical protein 1537 63.52 0 1647384..1648367 + 327 150396765 - Smed_1555 - mandelate racemase/muconate lactonizing protein 1538 60.95 0 1648319..1649542 - 407 150396766 - Smed_1556 - major facilitator transporter 1539 59.95 0 1649680..1650513 - 277 150396767 - Smed_1557 - metallophosphoesterase 1540 62.26 0 1650759..1653071 + 770 150396768 - Smed_1558 - malic enzyme 1541 59.78 0 1653276..1654016 + 246 150396769 - Smed_1559 - regulatory protein LuxR 1542 60.47 0 1654170..1654814 + 214 150396770 - Smed_1560 - autoinducer synthesis protein 1543 64.64 +1 1655000..1656133 + 377 150396771 - Smed_1561 - putative signal peptide protein 1544 61.35 0 1656248..1656943 - 231 150396772 - Smed_1562 - cob(II)yrinic acid a,c-diamide reductase 1545 62.77 0 1657242..1658063 - 273 150396773 - Smed_1563 - short chain dehydrogenase 1546 62.46 0 1658206..1659939 - 577 150396774 - Smed_1564 - ankyrin 1547 61.50 0 1660932..1662614 - 560 150396775 nadE Smed_1566 - NAD synthetase 1548 58.36 -1 1662853..1664790 + 645 150396776 - Smed_1567 - sulfatase 1549 63.03 0 1665165..1666127 + 320 150396777 - Smed_1568 - hypothetical protein 1550 60.54 0 1666193..1666600 - 135 150396778 - Smed_1569 - glutathione-dependent formaldehyde-activating GFA 1551 62.30 0 1666800..1668173 - 457 150396779 - Smed_1570 - phospho-2-dehydro-3-deoxyheptonate aldolase 1552 60.92 0 1668407..1669798 - 463 150396780 - Smed_1571 - glutathione reductase 1553 59.48 0 1669977..1670519 - 180 150396781 - Smed_1572 - hypothetical protein 1554 61.35 0 1670631..1671326 - 231 150396782 - Smed_1573 - ribose-5-phosphate isomerase A 1555 62.57 0 1671545..1672228 + 227 150396783 - Smed_1574 - phosphoglycolate phosphatase 1556 62.39 0 1672262..1674157 - 631 150396784 - Smed_1575 - hypothetical protein 1557 61.28 0 1674597..1676045 + 482 150396785 fumC Smed_1576 - fumarate hydratase 1558 62.56 0 1676091..1676699 - 202 150396786 - Smed_1577 - pyridoxamine 5'-phosphate oxidase-related FMN-binding 1559 64.27 0 1676793..1677710 - 305 150396787 - Smed_1578 - hypothetical protein 1560 59.39 0 1677725..1678246 + 173 150396788 - Smed_1579 - MarR family transcriptional regulator 1561 62.13 0 1678289..1678663 - 124 150396789 - Smed_1580 - hypothetical protein 1562 47.80 -2 1678660..1678818 - 52 150396790 - Smed_1581 - hypothetical protein 1563 60.48 0 1678822..1679871 + 349 150396791 moaA Smed_1582 - molybdenum cofactor biosynthesis protein A 1564 63.48 0 1680111..1681019 + 302 150396792 - Smed_1583 - hypothetical protein 1565 63.48 0 1681033..1681692 + 219 150396793 mobA Smed_1584 - molybdopterin-guanine dinucleotide biosynthesis protein A 1566 63.43 0 1681689..1682213 + 174 150396794 - Smed_1585 - molybdopterin-guanine dinucleotide biosynthesis protein B 1567 61.59 0 1682346..1683488 - 380 150396795 - Smed_1586 - Sel1 domain-containing protein 1568 63.66 0 1683609..1685771 - 720 150396796 - Smed_1587 - OmpA/MotB domain-containing protein 1569 58.24 -1 1686274..1687056 + 260 150396797 - Smed_1588 - extracellular solute-binding protein 1570 60.57 0 1687251..1688054 + 267 150396798 - Smed_1589 - polar amino acid ABC transporter, inner membrane subunit 1571 61.61 0 1688051..1688881 + 276 150396799 - Smed_1590 - polar amino acid ABC transporter, inner membrane subunit 1572 55.06 -2 1689052..1689318 + 88 150396800 - Smed_1591 - Usg family protein 1573 62.55 0 1689350..1690054 - 234 150396801 - Smed_1592 - short-chain dehydrogenase/reductase SDR 1574 62.15 0 1690167..1690853 - 228 150396802 - Smed_1593 - hypothetical protein 1575 61.45 0 1691161..1691985 + 274 150396803 - Smed_1594 - methyltransferase type 12 1576 61.15 0 1692037..1692906 + 289 150396804 - Smed_1595 - 6-phosphogluconate dehydrogenase NAD-binding 1577 64.38 0 1692903..1693601 + 232 150396805 - Smed_1596 - hypothetical protein 1578 57.46 -1 1693695..1694183 - 162 150396806 - Smed_1597 - AsnC family transcriptional regulator 1579 62.84 0 1694250..1694903 - 217 150396807 - Smed_1598 - uracil-DNA glycosylase superfamily protein 1580 65.14 +1 1694872..1695459 - 195 150396808 - Smed_1599 - nuclease 1581 60.61 0 1695735..1697270 + 511 150396809 - Smed_1600 - integral membrane sensor signal transduction histidine kinase 1582 60.13 0 1697549..1698481 + 310 150396810 - Smed_1601 - transposase IS116/IS110/IS902 family protein 1583 59.63 0 1698534..1699016 - 160 150396811 - Smed_1602 - diacylglycerol kinase 1584 65.59 +1 1699083..1700099 - 338 150396812 cobT Smed_1603 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 1585 68.31 +2 1700237..1701025 + 262 150396813 cobS Smed_1604 - cobalamin synthase 1586 63.06 0 1701071..1701292 + 73 150396814 - Smed_1605 - hypothetical protein 1587 62.39 0 1701289..1701990 + 233 150396815 - Smed_1606 - putative transmembrane signal peptide protein 1588 54.86 -2 1701998..1702759 - 253 150396816 - Smed_1607 - ABC-2 type transporter 1589 59.44 0 1702756..1703682 - 308 150396817 - Smed_1608 - ABC transporter related 1590 59.76 0 1703855..1704187 - 110 150396818 - Smed_1609 - regulatory protein ArsR 1591 60.38 0 1704197..1705087 - 296 150396819 - Smed_1610 - beta-lactamase domain-containing protein 1592 62.15 0 1705251..1706423 - 390 150396820 - Smed_1611 - extensin family protein 1593 67.57 +2 1706706..1707257 - 183 150396821 - Smed_1612 - protease inhibitor Kazal-type 1594 63.13 0 1707483..1709294 - 603 150396822 - Smed_1613 - methyl-accepting chemotaxis sensory transducer 1595 63.85 0 1709504..1709893 + 129 150396823 - Smed_1614 - thioesterase superfamily protein 1596 55.50 -2 1709905..1710495 + 196 150396824 - Smed_1615 - hypothetical protein 1597 57.06 -1 1710533..1710886 - 117 150396825 - Smed_1616 - hypothetical protein 1598 63.36 0 1711062..1713998 + 978 150396826 - Smed_1617 - excinuclease ABC subunit B 1599 64.81 +1 1714214..1714861 + 215 150396827 - Smed_1618 - glycine rich transmembrane protein 1600 61.49 0 1714949..1715566 - 205 150396828 - Smed_1619 - heat shock protein DnaJ domain-containing protein 1601 58.22 -1 1716066..1716278 + 70 150396829 - Smed_1620 - cold-shock DNA-binding domain-containing protein 1602 62.18 0 1716358..1717515 - 385 150396830 - Smed_1621 - tRNA-dihydrouridine synthase A 1603 57.09 -1 1717608..1718693 + 361 150396831 - Smed_1622 - phage integrase family protein 1604 55.64 -2 1719116..1720348 - 410 150396832 - Smed_1624 - hypothetical protein 1605 56.38 -1 1720454..1720735 - 93 150396833 - Smed_1625 - hypothetical protein 61.69 MEAN 2.82 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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