IslandPathversion 1.0

IslandPath Analysis: Sinorhizobium medicae WSM419



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.69 STD DEV: 2.82
Sinorhizobium medicae WSM419, complete genome - 1..3781904
3529 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1444	 61.69	0	1541230..1542012	+	260	150396672	radC	Smed_1459	-	DNA repair protein RadC
1445	 60.50	0	1542215..1543219	-	334	150396673	-	Smed_1460	-	Beta-lactamase
1446	 59.04	0	1543281..1544303	+	340	150396674	-	Smed_1461	-	LysR family transcriptional regulator
1447	 60.04	0	1544468..1545976	+	502	150396675	-	Smed_1462	-	soluble pyridine nucleotide transhydrogenase
1448	 61.07	0	1546098..1546490	-	130	150396676	-	Smed_1463	-	FeS assembly scaffold SufA
1449	 58.53	-1	1546594..1546974	-	126	150396677	-	Smed_1464	-	FeS assembly SUF system protein
1450	 59.66	0	1546985..1548226	-	413	150396678	-	Smed_1465	-	SufS subfamily cysteine desulfurase
1451	 61.11	0	1548239..1549516	-	425	150396679	-	Smed_1466	-	FeS assembly protein SufD
1452	 59.13	0	1549539..1550294	-	251	150396680	-	Smed_1467	-	FeS assembly ATPase SufC
1453	 58.03	-1	1550403..1551872	-	489	150396681	-	Smed_1468	-	cysteine desulfurase activator complex subunit SufB
1454	 65.01	+1	1552027..1553235	-	402	150396682	-	Smed_1469	-	aminotransferase class V
1455	 60.03	0	1553414..1554091	+	225	150396683	-	Smed_1470	-	hypothetical protein
1456	 62.49	0	1554179..1555375	-	398	150396684	-	Smed_1471	-	diguanylate cyclase
1457	 60.75	0	1555466..1556614	-	382	150396685	anmK	Smed_1472	-	anhydro-N-acetylmuramic acid kinase
1458	 60.37	0	1556778..1558031	+	417	150396686	-	Smed_1473	-	tyrosyl-tRNA synthetase
1459	 62.86	0	1558074..1561460	-	1128	150396687	-	Smed_1474	-	hypothetical protein
1460	 58.97	0	1561879..1562346	+	155	150396688	-	Smed_1475	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
1461	 63.65	0	1562364..1563191	+	275	150396689	-	Smed_1476	-	hypothetical protein
1462	 61.85	0	1563333..1564661	+	442	150396690	-	Smed_1477	-	peptidase M23B
1463	 59.67	0	1564858..1566357	+	499	150396691	-	Smed_1478	-	DEAD/DEAH box helicase domain-containing protein
1464	 62.75	0	1566368..1566775	+	135	150396692	-	Smed_1479	-	NUDIX hydrolase
1465	 60.38	0	1566823..1567140	-	105	150396693	-	Smed_1480	-	TfoX domain-containing protein
1466	 65.31	+1	1567144..1568760	-	538	150396694	-	Smed_1481	-	4-diphosphocytidyl-2C-methyl-D-erythritol synthase
1467	 65.11	+1	1568757..1569464	-	235	150396695	-	Smed_1482	-	xanthine dehydrogenase accessory factor
1468	 64.56	+1	1569468..1569800	-	110	150396696	-	Smed_1483	-	hypothetical protein
1469	 63.95	0	1569857..1571146	-	429	150396697	-	Smed_1484	-	VWA containing CoxE family protein
1470	 59.68	0	1571152..1572081	-	309	150396698	-	Smed_1485	-	ATPase
1471	 60.88	0	1572105..1572605	-	166	150396699	-	Smed_1486	-	flavin reductase domain-containing protein
1472	 61.71	0	1572796..1573884	+	362	150396700	-	Smed_1487	-	extracellular ligand-binding receptor
1473	 65.97	+1	1573881..1574888	+	335	150396701	-	Smed_1488	-	peptidase S58 DmpA
1474	 60.94	0	1575045..1575725	+	226	150396702	-	Smed_1489	-	ribulose-phosphate 3-epimerase
1475	 61.38	0	1575722..1576477	+	251	150396703	-	Smed_1490	-	hypothetical protein
1476	 62.90	0	1576477..1577034	+	185	150396704	-	Smed_1491	-	hypothetical protein
1477	 59.48	0	1577099..1578406	+	435	150396705	-	Smed_1492	-	adenylosuccinate lyase
1478	 56.86	-1	1578537..1578842	+	101	150396706	-	Smed_1493	-	type IV pilus assembly PilZ
1479	 60.74	0	1578912..1579721	-	269	150396707	-	Smed_1494	-	hypothetical protein
1480	 63.46	0	1579878..1580438	+	186	150396708	-	Smed_1495	-	hypothetical protein
1481	 61.90	0	1580692..1581006	-	104	150396709	-	Smed_1497	-	hypothetical protein
1482	 58.17	-1	1581234..1581998	+	254	150396710	-	Smed_1498	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
1483	 58.44	-1	1582017..1582259	+	80	150396711	-	Smed_1499	-	phosphoribosylformylglycinamidine synthase subunit PurS
1484	 62.65	0	1582340..1583011	+	223	150396712	-	Smed_1500	-	phosphoribosylformylglycinamidine synthase subunit I
1485	 67.65	+2	1583137..1583544	+	135	150396713	-	Smed_1501	-	hypothetical protein
1486	 59.26	0	1583644..1583886	-	80	150396714	-	Smed_1502	-	hypothetical protein
1487	 63.78	0	1583967..1585385	+	472	150396715	-	Smed_1503	-	GntR family transcriptional regulator
1488	 60.20	0	1585481..1586068	+	195	150396716	-	Smed_1504	-	hypothetical protein
1489	 62.77	0	1586239..1588470	+	743	150396717	-	Smed_1505	-	phosphoribosylformylglycinamidine synthase II
1490	 60.68	0	1588595..1588828	+	77	150396718	-	Smed_1506	-	BolA family protein
1491	 59.26	0	1588834..1589076	+	80	150396719	-	Smed_1507	-	hypothetical protein
1492	 57.44	-1	1589239..1589574	+	111	150396720	-	Smed_1508	-	glutaredoxin-like protein
1493	 59.97	0	1589918..1591156	+	412	150396721	-	Smed_1509	-	Bcr/CflA subfamily drug resistance transporter
1494	 60.43	0	1591199..1592512	+	437	150396722	-	Smed_1510	-	major facilitator transporter
1495	 62.91	0	1592570..1593394	-	274	150396723	-	Smed_1511	-	inositol monophosphatase
1496	 59.18	0	1593397..1594278	-	293	150396724	-	Smed_1512	-	PP-loop domain-containing protein
1497	 60.86	0	1594420..1595367	-	315	150396725	-	Smed_1513	-	glutaminase
1498	 59.22	0	1595463..1596080	-	205	150396726	rpsD	Smed_1514	-	30S ribosomal protein S4
1499	 64.62	+1	1596333..1597847	-	504	150396727	-	Smed_1515	-	AAA ATPase
1500	 62.13	0	1597976..1598791	-	271	150396728	-	Smed_1516	-	glutamate racemase
1501	 61.49	0	1598778..1599608	-	276	150396729	-	Smed_1517	-	RNA methyltransferase
1502	 62.52	0	1599659..1601659	-	666	150396730	-	Smed_1518	-	hypothetical protein
1503	 60.00	0	1601963..1603177	+	404	150396731	-	Smed_1519	-	isocitrate dehydrogenase
1504	 63.44	0	1604020..1606683	-	887	150396732	alaS	Smed_1521	-	alanyl-tRNA synthetase
1505	 59.02	0	1606902..1607987	-	361	150396733	recA	Smed_1522	-	recombinase A
1506	 62.69	0	1609421..1610350	+	309	150396734	-	Smed_1524	-	indigoidine synthase A family protein
1507	 62.05	0	1610442..1613060	-	872	150396735	-	Smed_1525	-	multi-sensor hybrid histidine kinase
1508	 66.47	+1	1613425..1614417	+	330	150396736	-	Smed_1526	-	putative CheA signal transduction histidine kinase
1509	 58.57	-1	1614545..1614964	-	139	150396737	-	Smed_1527	-	TraR/DksA family transcriptional regulator
1510	 63.52	0	1615370..1615909	+	179	150396738	-	Smed_1528	-	putative phosphohistidine phosphatase, SixA
1511	 63.47	0	1616076..1617575	+	499	150396739	-	Smed_1529	-	protein of unknown function DUF463 YcjX family protein
1512	 65.38	+1	1617572..1618657	+	361	150396740	-	Smed_1530	-	hypothetical protein
1513	 60.69	0	1618777..1619328	+	183	150396741	-	Smed_1531	-	putative signal peptide protein
1514	 60.57	0	1619378..1619902	-	174	150396742	-	Smed_1532	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
1515	 60.22	0	1619889..1620260	-	123	150396743	-	Smed_1533	-	dihydroneopterin aldolase
1516	 62.53	0	1620257..1621126	-	289	150396744	-	Smed_1534	-	dihydropteroate synthase
1517	 60.06	0	1621269..1621949	+	226	150396745	-	Smed_1535	-	hypothetical protein
1518	 59.81	0	1622486..1622806	-	106	150396746	-	Smed_1536	-	ferredoxin
1519	 60.70	0	1623096..1623464	-	122	150396747	-	Smed_1537	-	Hpt domain-containing protein
1520	 64.43	0	1623967..1630125	+	2052	150396748	-	Smed_1538	-	chemotaxis sensory transducer
1521	 60.34	0	1630779..1631648	-	289	150396749	-	Smed_1539	-	cytochrome c1
1522	 58.39	-1	1631680..1632960	-	426	150396750	-	Smed_1540	-	cytochrome b/b6 domain-containing protein
1523	 62.00	0	1632975..1633553	-	192	150396751	-	Smed_1541	-	ubiquinol-cytochrome c reductase, iron-sulfur subunit
1524	 61.58	0	1633870..1635735	-	621	150396752	-	Smed_1542	-	ABC transporter related
1525	 59.60	0	1635852..1637705	-	617	150396753	-	Smed_1543	-	ABC transporter related
1526	 61.04	0	1638184..1638645	+	153	150396754	-	Smed_1544	-	tRNA/rRNA methyltransferase (SpoU)
1527	 60.46	0	1638701..1639312	-	203	150396755	-	Smed_1545	-	NADPH-dependent FMN reductase
1528	 62.76	0	1639352..1639837	+	161	150396756	-	Smed_1546	-	MerR family transcriptional regulator
1529	 63.38	0	1639842..1641026	-	394	150396757	-	Smed_1547	-	major facilitator transporter
1530	 65.90	+1	1641173..1641433	-	86	150396758	-	Smed_1548	-	hypothetical protein
1531	 61.18	0	1641637..1642548	+	303	150396759	-	Smed_1549	-	coproporphyrinogen III oxidase
1532	 62.72	0	1642633..1642911	+	92	150396760	-	Smed_1550	-	transport-associated
1533	 60.98	0	1643085..1643699	-	204	150396761	-	Smed_1551	-	hypothetical protein
1534	 57.08	-1	1643779..1645155	-	458	150396762	-	Smed_1552	-	hypothetical protein
1535	 60.35	0	1645242..1646048	-	268	150396763	-	Smed_1553	-	ABC transporter related
1536	 62.37	0	1646059..1647198	-	379	150396764	-	Smed_1554	-	hypothetical protein
1537	 63.52	0	1647384..1648367	+	327	150396765	-	Smed_1555	-	mandelate racemase/muconate lactonizing protein
1538	 60.95	0	1648319..1649542	-	407	150396766	-	Smed_1556	-	major facilitator transporter
1539	 59.95	0	1649680..1650513	-	277	150396767	-	Smed_1557	-	metallophosphoesterase
1540	 62.26	0	1650759..1653071	+	770	150396768	-	Smed_1558	-	malic enzyme
1541	 59.78	0	1653276..1654016	+	246	150396769	-	Smed_1559	-	regulatory protein LuxR
1542	 60.47	0	1654170..1654814	+	214	150396770	-	Smed_1560	-	autoinducer synthesis protein
1543	 64.64	+1	1655000..1656133	+	377	150396771	-	Smed_1561	-	putative signal peptide protein
61.69	MEAN

2.82	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.