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Sinorhizobium medicae WSM419, complete genome - 1..3781904 3529 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1408 61.27 0 1504588..1505550 - 320 150396636 - Smed_1422 - auxin efflux carrier 1409 60.62 0 1505580..1506323 - 247 150396637 - Smed_1423 - cytochrome c biogenesis protein transmembrane region 1410 55.97 -2 1506918..1507964 + 348 150396638 - Smed_1424 - FkbM family methyltransferase 1411 54.92 -2 1507976..1508239 + 87 150396639 - Smed_1425 - hypothetical protein 1412 59.10 0 1508358..1509242 + 294 150396640 - Smed_1426 - Ku family containing protein 1413 57.35 -1 1509255..1510070 + 271 150396641 - Smed_1427 - Ku family containing protein 1414 55.59 -2 1510331..1511188 + 285 150396642 - Smed_1428 - methyltransferase type 12 1415 56.00 -2 1511280..1511579 - 99 150396643 - Smed_1429 - putative signal peptide protein 1416 64.68 +1 1511807..1512208 + 133 150396644 - Smed_1430 - hypothetical protein 1417 62.50 0 1513078..1513485 + 135 150396645 - Smed_1431 - hypothetical protein 1418 60.00 0 1513720..1514034 + 104 150396646 - Smed_1432 - hypothetical protein 1419 62.38 0 1514091..1515116 - 341 150396647 - Smed_1433 - AraC family transcriptional regulator 1420 62.35 0 1515373..1516020 + 215 150396648 - Smed_1434 - porin 1421 59.09 0 1516243..1516506 + 87 150396649 - Smed_1435 - putative signal peptide protein 1422 61.29 0 1516552..1517406 - 284 150396650 - Smed_1436 - hypothetical protein 1423 61.62 0 1517409..1518161 - 250 150396651 - Smed_1437 - short-chain dehydrogenase/reductase SDR 1424 61.64 0 1518158..1519807 - 549 150396652 - Smed_1438 - acyl-CoA synthetase 1425 61.71 0 1519804..1520973 - 389 150396653 - Smed_1439 - acetyl-CoA acetyltransferase 1426 64.43 0 1520970..1521818 - 282 150396654 - Smed_1440 - regulatory protein IclR 1427 62.81 0 1521822..1522625 - 267 150396655 - Smed_1441 - short-chain dehydrogenase/reductase SDR 1428 59.45 0 1522726..1523736 - 336 150396656 - Smed_1442 - TRAP dicarboxylate transporter, DctP subunit 1429 61.69 0 1523785..1525653 - 622 150396657 - Smed_1443 - TRAP C4-dicarboxylate transport system permease DctM subunit 1430 56.75 -1 1526132..1526383 + 83 150396658 - Smed_1444 - hypothetical protein 1431 54.90 -2 1527008..1527313 + 101 150396659 - Smed_1445 - hypothetical protein 1432 57.84 -1 1527731..1528036 - 101 150396660 - Smed_1447 - ETC complex I subunit region 1433 61.38 0 1528260..1528751 - 163 150396661 - Smed_1448 - hypothetical protein 1434 61.31 0 1528751..1529329 - 192 150396662 - Smed_1449 - cold-shock DNA-binding domain-containing protein 1435 59.41 0 1529526..1529966 + 146 150396663 - Smed_1450 - glyoxalase/bleomycin resistance protein/dioxygenase 1436 63.75 0 1530377..1531678 + 433 150396664 - Smed_1451 - peptidase M15A 1437 63.28 0 1532678..1534480 - 600 150396665 - Smed_1452 - single-stranded-DNA-specific exonuclease RecJ 1438 60.17 0 1534608..1535930 - 440 150396666 - Smed_1453 - homoserine dehydrogenase 1439 60.59 0 1536009..1537226 - 405 150396667 - Smed_1454 - aminotransferase 1440 60.13 0 1537351..1537656 - 101 150396668 - Smed_1455 - hypothetical protein 1441 60.68 0 1537766..1539601 + 611 150396669 - Smed_1456 - poly(R)-hydroxyalkanoic acid synthase, class I 1442 59.44 0 1539645..1540364 + 239 150396670 - Smed_1457 - sugar fermentation stimulation protein A 1443 60.71 0 1540394..1541233 + 279 150396671 - Smed_1458 - methionine aminopeptidase 1444 61.69 0 1541230..1542012 + 260 150396672 radC Smed_1459 - DNA repair protein RadC 1445 60.50 0 1542215..1543219 - 334 150396673 - Smed_1460 - Beta-lactamase 1446 59.04 0 1543281..1544303 + 340 150396674 - Smed_1461 - LysR family transcriptional regulator 1447 60.04 0 1544468..1545976 + 502 150396675 - Smed_1462 - soluble pyridine nucleotide transhydrogenase 1448 61.07 0 1546098..1546490 - 130 150396676 - Smed_1463 - FeS assembly scaffold SufA 1449 58.53 -1 1546594..1546974 - 126 150396677 - Smed_1464 - FeS assembly SUF system protein 1450 59.66 0 1546985..1548226 - 413 150396678 - Smed_1465 - SufS subfamily cysteine desulfurase 1451 61.11 0 1548239..1549516 - 425 150396679 - Smed_1466 - FeS assembly protein SufD 1452 59.13 0 1549539..1550294 - 251 150396680 - Smed_1467 - FeS assembly ATPase SufC 1453 58.03 -1 1550403..1551872 - 489 150396681 - Smed_1468 - cysteine desulfurase activator complex subunit SufB 1454 65.01 +1 1552027..1553235 - 402 150396682 - Smed_1469 - aminotransferase class V 1455 60.03 0 1553414..1554091 + 225 150396683 - Smed_1470 - hypothetical protein 1456 62.49 0 1554179..1555375 - 398 150396684 - Smed_1471 - diguanylate cyclase 1457 60.75 0 1555466..1556614 - 382 150396685 anmK Smed_1472 - anhydro-N-acetylmuramic acid kinase 1458 60.37 0 1556778..1558031 + 417 150396686 - Smed_1473 - tyrosyl-tRNA synthetase 1459 62.86 0 1558074..1561460 - 1128 150396687 - Smed_1474 - hypothetical protein 1460 58.97 0 1561879..1562346 + 155 150396688 - Smed_1475 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 1461 63.65 0 1562364..1563191 + 275 150396689 - Smed_1476 - hypothetical protein 1462 61.85 0 1563333..1564661 + 442 150396690 - Smed_1477 - peptidase M23B 1463 59.67 0 1564858..1566357 + 499 150396691 - Smed_1478 - DEAD/DEAH box helicase domain-containing protein 1464 62.75 0 1566368..1566775 + 135 150396692 - Smed_1479 - NUDIX hydrolase 1465 60.38 0 1566823..1567140 - 105 150396693 - Smed_1480 - TfoX domain-containing protein 1466 65.31 +1 1567144..1568760 - 538 150396694 - Smed_1481 - 4-diphosphocytidyl-2C-methyl-D-erythritol synthase 1467 65.11 +1 1568757..1569464 - 235 150396695 - Smed_1482 - xanthine dehydrogenase accessory factor 1468 64.56 +1 1569468..1569800 - 110 150396696 - Smed_1483 - hypothetical protein 1469 63.95 0 1569857..1571146 - 429 150396697 - Smed_1484 - VWA containing CoxE family protein 1470 59.68 0 1571152..1572081 - 309 150396698 - Smed_1485 - ATPase 1471 60.88 0 1572105..1572605 - 166 150396699 - Smed_1486 - flavin reductase domain-containing protein 1472 61.71 0 1572796..1573884 + 362 150396700 - Smed_1487 - extracellular ligand-binding receptor 1473 65.97 +1 1573881..1574888 + 335 150396701 - Smed_1488 - peptidase S58 DmpA 1474 60.94 0 1575045..1575725 + 226 150396702 - Smed_1489 - ribulose-phosphate 3-epimerase 1475 61.38 0 1575722..1576477 + 251 150396703 - Smed_1490 - hypothetical protein 1476 62.90 0 1576477..1577034 + 185 150396704 - Smed_1491 - hypothetical protein 1477 59.48 0 1577099..1578406 + 435 150396705 - Smed_1492 - adenylosuccinate lyase 1478 56.86 -1 1578537..1578842 + 101 150396706 - Smed_1493 - type IV pilus assembly PilZ 1479 60.74 0 1578912..1579721 - 269 150396707 - Smed_1494 - hypothetical protein 1480 63.46 0 1579878..1580438 + 186 150396708 - Smed_1495 - hypothetical protein 1481 61.90 0 1580692..1581006 - 104 150396709 - Smed_1497 - hypothetical protein 1482 58.17 -1 1581234..1581998 + 254 150396710 - Smed_1498 - phosphoribosylaminoimidazole-succinocarboxamide synthase 1483 58.44 -1 1582017..1582259 + 80 150396711 - Smed_1499 - phosphoribosylformylglycinamidine synthase subunit PurS 1484 62.65 0 1582340..1583011 + 223 150396712 - Smed_1500 - phosphoribosylformylglycinamidine synthase subunit I 1485 67.65 +2 1583137..1583544 + 135 150396713 - Smed_1501 - hypothetical protein 1486 59.26 0 1583644..1583886 - 80 150396714 - Smed_1502 - hypothetical protein 1487 63.78 0 1583967..1585385 + 472 150396715 - Smed_1503 - GntR family transcriptional regulator 1488 60.20 0 1585481..1586068 + 195 150396716 - Smed_1504 - hypothetical protein 1489 62.77 0 1586239..1588470 + 743 150396717 - Smed_1505 - phosphoribosylformylglycinamidine synthase II 1490 60.68 0 1588595..1588828 + 77 150396718 - Smed_1506 - BolA family protein 1491 59.26 0 1588834..1589076 + 80 150396719 - Smed_1507 - hypothetical protein 1492 57.44 -1 1589239..1589574 + 111 150396720 - Smed_1508 - glutaredoxin-like protein 1493 59.97 0 1589918..1591156 + 412 150396721 - Smed_1509 - Bcr/CflA subfamily drug resistance transporter 1494 60.43 0 1591199..1592512 + 437 150396722 - Smed_1510 - major facilitator transporter 1495 62.91 0 1592570..1593394 - 274 150396723 - Smed_1511 - inositol monophosphatase 1496 59.18 0 1593397..1594278 - 293 150396724 - Smed_1512 - PP-loop domain-containing protein 1497 60.86 0 1594420..1595367 - 315 150396725 - Smed_1513 - glutaminase 1498 59.22 0 1595463..1596080 - 205 150396726 rpsD Smed_1514 - 30S ribosomal protein S4 1499 64.62 +1 1596333..1597847 - 504 150396727 - Smed_1515 - AAA ATPase 1500 62.13 0 1597976..1598791 - 271 150396728 - Smed_1516 - glutamate racemase 1501 61.49 0 1598778..1599608 - 276 150396729 - Smed_1517 - RNA methyltransferase 1502 62.52 0 1599659..1601659 - 666 150396730 - Smed_1518 - hypothetical protein 1503 60.00 0 1601963..1603177 + 404 150396731 - Smed_1519 - isocitrate dehydrogenase 1504 63.44 0 1604020..1606683 - 887 150396732 alaS Smed_1521 - alanyl-tRNA synthetase 1505 59.02 0 1606902..1607987 - 361 150396733 recA Smed_1522 - recombinase A 1506 62.69 0 1609421..1610350 + 309 150396734 - Smed_1524 - indigoidine synthase A family protein 1507 62.05 0 1610442..1613060 - 872 150396735 - Smed_1525 - multi-sensor hybrid histidine kinase 61.69 MEAN 2.82 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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