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Sinorhizobium medicae WSM419, complete genome - 1..3781904 3529 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1236 59.79 0 1336608..1336898 - 96 150396464 - Smed_1246 - regulatory protein ArsR 1237 57.64 -1 1337537..1338433 - 298 150396465 - Smed_1247 - LysR family transcriptional regulator 1238 60.62 0 1338665..1339639 - 324 150396466 - Smed_1248 - thioredoxin reductase 1239 59.24 0 1340078..1340548 + 156 150396467 - Smed_1249 - AsnC family transcriptional regulator 1240 59.41 0 1340646..1341458 + 270 150396468 - Smed_1250 - glycosyl transferase family protein 1241 59.01 0 1341477..1342508 + 343 150396469 - Smed_1251 - phosphatidylserine decarboxylase 1242 60.70 0 1342505..1343527 + 340 150396470 - Smed_1252 - phosphatidylserine decarboxylase 1243 63.64 0 1343557..1344612 - 351 150396471 - Smed_1253 - glycosyl transferase group 1 1244 58.07 -1 1344698..1345174 - 158 150396472 greA Smed_1254 - transcription elongation factor GreA 1245 62.61 0 1345464..1346942 + 492 150396473 - Smed_1255 - major facilitator transporter 1246 60.90 0 1346887..1347198 - 103 150396474 - Smed_1256 - hypothetical protein 1247 62.40 0 1347330..1350821 - 1163 150396475 carB Smed_1257 - carbamoyl phosphate synthase large subunit 1248 64.54 +1 1351031..1352065 - 344 150396476 - Smed_1258 - alcohol dehydrogenase 1249 62.07 0 1352284..1353219 + 311 150396477 - Smed_1259 - protein of unknown function zinc metallopeptidase putative 1250 62.36 0 1353263..1354261 - 332 150396478 - Smed_1260 - aldo/keto reductase 1251 63.81 0 1354379..1355287 + 302 150396479 - Smed_1261 - LysR family transcriptional regulator 1252 60.43 0 1355444..1356709 + 421 150396480 - Smed_1262 - major facilitator transporter 1253 61.32 0 1356867..1358270 + 467 150396481 - Smed_1263 - MATE efflux family protein 1254 60.44 0 1358823..1359368 + 181 150396482 coaD Smed_1264 - phosphopantetheine adenylyltransferase 1255 60.91 0 1359393..1359983 + 196 150396483 - Smed_1265 - peptidyl-prolyl cis-trans isomerase cyclophilin type 1256 60.59 0 1360008..1360517 + 169 150396484 - Smed_1266 - peptidyl-prolyl cis-trans isomerase cyclophilin type 1257 62.70 0 1360595..1361677 + 360 150396485 queA Smed_1267 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1258 62.51 0 1361678..1362808 + 376 150396486 tgt Smed_1268 - queuine tRNA-ribosyltransferase 1259 65.65 +1 1362916..1363800 - 294 150396487 - Smed_1269 - short-chain dehydrogenase/reductase SDR 1260 61.96 0 1363797..1364582 - 261 150396488 - Smed_1270 - hypothetical protein 1261 59.52 0 1364593..1365180 - 195 150396489 - Smed_1271 - isoprenylcysteine carboxyl methyltransferase 1262 60.00 0 1365350..1365934 - 194 150396490 - Smed_1272 - putative lipoprotein 1263 61.68 0 1366425..1367006 - 193 150396491 - Smed_1273 - ErfK/YbiS/YcfS/YnhG family protein 1264 63.36 0 1367174..1367929 + 251 150396492 - Smed_1274 - short-chain dehydrogenase/reductase SDR 1265 64.10 0 1368013..1369179 - 388 150396493 - Smed_1275 - major facilitator transporter 1266 62.40 0 1369417..1370916 + 499 150396494 - Smed_1276 - transcriptional regulator domain-containing protein 1267 60.31 0 1370954..1371346 - 130 150396495 - Smed_1277 - glutathione-dependent formaldehyde-activating GFA 1268 63.42 0 1371613..1373427 + 604 150396496 - Smed_1278 - hypothetical protein 1269 63.13 0 1373424..1374722 + 432 150396497 - Smed_1279 - type III effector Hrp-dependent outers 1270 61.29 0 1374953..1375714 + 253 150396498 - Smed_1280 - protein of unknown function DUF899 thioredoxin family protein 1271 60.22 0 1375786..1377414 - 542 150396499 groEL Smed_1281 - chaperonin GroEL 1272 59.37 0 1377460..1377774 - 104 150396500 - Smed_1282 - chaperonin Cpn10 1273 58.61 -1 1378047..1378319 + 90 150396501 - Smed_1283 - Usg family protein 1274 59.45 0 1378416..1378706 + 96 150396502 - Smed_1284 - hypothetical protein 1275 62.94 0 1378802..1380895 - 697 150396503 - Smed_1285 - NADH:flavin oxidoreductase/NADH oxidase 1276 61.43 0 1381534..1382907 - 457 150396504 - Smed_1286 - integrase catalytic region 1277 59.88 0 1383033..1384034 - 333 150396505 - Smed_1287 - integrase catalytic region 1278 60.47 0 1384194..1385048 - 284 150396506 - Smed_1288 - beta-lactamase domain-containing protein 1279 58.85 -1 1385052..1385831 - 259 150396507 - Smed_1289 - TatD family hydrolase 1280 61.19 0 1385846..1387396 - 516 150396508 - Smed_1290 - methionyl-tRNA synthetase 1281 63.18 0 1387600..1388631 - 343 150396509 - Smed_1291 - DNA polymerase III subunit delta' 1282 62.13 0 1388628..1389332 - 234 150396510 - Smed_1292 - dTMP kinase 1283 61.13 0 1389390..1390544 - 384 150396511 - Smed_1293 - Serine-type D-Ala-D-Ala carboxypeptidase 1284 61.19 0 1390601..1391641 - 346 150396512 - Smed_1294 - rare lipoprotein A 1285 58.22 -1 1392328..1392552 + 74 150396513 - Smed_1295 - hypothetical protein 1286 62.60 0 1392610..1392855 + 81 150396514 - Smed_1296 - hypothetical protein 1287 55.96 -2 1393030..1393356 - 108 150396515 - Smed_1297 - hypothetical protein 1288 56.78 -1 1393439..1393711 + 90 150396516 - Smed_1298 - hypothetical protein 1289 58.50 -1 1393900..1395969 + 689 150396517 - Smed_1299 - hypothetical protein 1290 58.41 -1 1395969..1396283 + 104 150396518 - Smed_1300 - hypothetical protein 1291 62.07 0 1396280..1396540 + 86 150396519 - Smed_1301 - hypothetical protein 1292 58.26 -1 1396640..1396972 + 110 150396520 - Smed_1302 - hypothetical protein 1293 43.59 -2 1397015..1397209 + 64 150396521 - Smed_1303 - hypothetical protein 1294 47.52 -2 1397300..1397743 + 147 150396522 - Smed_1304 - hypothetical protein 1295 62.69 0 1397752..1398783 - 343 150396523 - Smed_1305 - DNA polymerase LigD ligase region 1296 61.37 0 1398855..1399307 + 150 150396524 - Smed_1306 - hypothetical protein 1297 62.96 0 1399300..1399515 + 71 150396525 - Smed_1307 - hypothetical protein 1298 54.98 -2 1400014..1400646 - 210 150396526 - Smed_1308 - hypothetical protein 1299 52.74 -2 1400801..1401037 + 78 150396527 - Smed_1309 - hypothetical protein 1300 58.42 -1 1401717..1402007 - 96 150396528 - Smed_1310 - hypothetical protein 1301 58.27 -1 1402004..1402408 - 134 150396529 - Smed_1311 - hypothetical protein 1302 63.42 0 1402405..1403328 - 307 150396530 - Smed_1312 - peptidoglycan binding domain-containing protein 1303 52.00 -2 1403501..1404400 - 299 150396531 - Smed_1313 - hypothetical protein 1304 59.36 0 1404562..1407012 - 816 150396532 - Smed_1314 - hypothetical protein 1305 61.02 0 1407085..1409193 - 702 150396533 - Smed_1315 - hypothetical protein 1306 65.73 +1 1409194..1409514 - 106 150396534 - Smed_1316 - hypothetical protein 1307 57.10 -1 1409663..1410268 + 201 150396535 - Smed_1317 - hypothetical protein 1308 58.90 0 1410293..1410730 - 145 150396536 - Smed_1318 - hypothetical protein 1309 57.22 -1 1410720..1410899 - 59 150396537 - Smed_1319 - hypothetical protein 1310 60.71 0 1410909..1411613 - 234 150396538 - Smed_1320 - hypothetical protein 1311 59.96 0 1411610..1413892 - 760 150396539 - Smed_1321 - phage tape measure protein 1312 53.82 -2 1413969..1414256 + 95 150396540 - Smed_1322 - hypothetical protein 1313 62.46 0 1414468..1414824 - 118 150396541 - Smed_1323 - hypothetical protein 1314 61.42 0 1414824..1415261 - 145 150396542 - Smed_1324 - hypothetical protein 1315 58.99 0 1415302..1415718 - 138 150396543 - Smed_1325 - gene transfer agent 1316 58.39 -1 1415718..1416200 - 160 150396544 - Smed_1326 - HK97 family phage protein 1317 59.54 0 1416197..1416547 - 116 150396545 - Smed_1327 - phage head-tail adaptor, putative 1318 59.12 0 1416698..1417108 - 136 150396546 - Smed_1328 - hypothetical protein 1319 55.44 -2 1417110..1417403 - 97 150396547 - Smed_1329 - hypothetical protein 1320 63.00 0 1417413..1418750 - 445 150396548 - Smed_1330 - hypothetical protein 1321 60.88 0 1418754..1419116 - 120 150396549 - Smed_1331 - hypothetical protein 1322 55.32 -2 1419135..1419707 - 190 150396550 - Smed_1332 - phiE125 gp8 hypothetical protein 1323 60.00 0 1419923..1420312 - 129 150396551 - Smed_1333 - hypothetical protein 1324 59.14 0 1420375..1421649 - 424 150396552 - Smed_1334 - HK97 family phage major capsid protein 1325 58.74 -1 1421695..1422426 - 243 150396553 - Smed_1335 - HK97 family phage prohead protease 1326 58.45 -1 1422413..1423666 - 417 150396554 - Smed_1336 - HK97 family phage portal protein 1327 59.62 0 1423684..1425159 - 491 150396555 - Smed_1337 - phage terminase 1328 60.72 0 1425279..1425749 - 156 150396556 - Smed_1338 - P27 family phage terminase small subunit 1329 61.99 0 1425862..1426203 - 113 150396557 - Smed_1339 - hypothetical protein 1330 59.56 0 1426220..1426402 + 60 150396558 - Smed_1340 - hypothetical protein 1331 52.56 -2 1426425..1426658 + 77 150396559 - Smed_1341 - hypothetical protein 1332 60.21 0 1426890..1428050 - 386 150396560 - Smed_1342 - hypothetical protein 1333 58.96 0 1428051..1428452 - 133 150396561 - Smed_1343 - hypothetical protein 1334 58.41 -1 1428449..1428763 - 104 150396562 - Smed_1344 - hypothetical protein 1335 52.78 -2 1428775..1428954 - 59 150396563 - Smed_1345 - hypothetical protein 61.69 MEAN 2.82 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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