IslandPathversion 1.0

IslandPath Analysis: Sinorhizobium medicae WSM419



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.69 STD DEV: 2.82
Sinorhizobium medicae WSM419, complete genome - 1..3781904
3529 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1161	 60.68	0	1246741..1247391	+	216	150396389	-	Smed_1170	-	biotin-regulated protein
1162	 63.99	0	1247627..1249156	+	509	150396390	-	Smed_1171	-	peptidase M23B
1163	 60.16	0	1249560..1250435	-	291	150396391	-	Smed_1172	-	hypothetical protein
1164	 60.36	0	1250772..1251104	+	110	150396392	-	Smed_1173	-	preprotein translocase, YajC subunit
1165	 61.04	0	1251265..1253841	+	858	150396393	-	Smed_1174	-	bifunctional preprotein translocase subunit SecD/SecF
1166	 65.12	+1	1253844..1254230	+	128	150396394	-	Smed_1175	-	hypothetical protein
1167	 62.63	0	1254252..1255094	+	280	150396395	-	Smed_1176	-	putative phytoene synthase protein
1168	 59.43	0	1255176..1255631	+	151	150396396	-	Smed_1177	-	hypothetical protein
1169	 62.44	0	1255641..1257083	-	480	150396397	-	Smed_1178	-	tRNA (uracil-5-)-methyltransferase Gid
1170	 56.94	-1	1257175..1257318	-	47	150396398	-	Smed_1179	-	hypothetical protein
1171	 54.73	-2	1257614..1257814	-	66	150396399	-	Smed_1180	-	hypothetical protein
1172	 59.62	0	1259019..1260494	+	491	150396400	tig	Smed_1181	-	trigger factor
1173	 62.58	0	1260884..1263748	-	954	150396401	-	Smed_1182	-	glycine dehydrogenase
1174	 61.71	0	1263748..1264110	-	120	150396402	-	Smed_1183	-	glycine cleavage system protein H
1175	 62.46	0	1264127..1265266	-	379	150396403	-	Smed_1184	-	glycine cleavage system aminomethyltransferase T
1176	 66.16	+1	1265651..1266043	+	130	150396404	-	Smed_1185	-	hypothetical protein
1177	 62.20	0	1266132..1267115	+	327	150396405	-	Smed_1186	-	hypothetical protein
1178	 61.75	0	1267210..1267575	-	121	150396406	-	Smed_1187	-	hypothetical protein
1179	 60.49	0	1268674..1268835	-	53	150396407	-	Smed_1188	-	hypothetical protein
1180	 58.24	-1	1270069..1271907	-	612	150396408	-	Smed_1190	-	hypothetical protein
1181	 62.88	0	1271904..1272986	-	360	150396409	-	Smed_1191	-	hypothetical protein
1182	 60.28	0	1273004..1275226	-	740	150396410	-	Smed_1192	-	integrase, catalytic region
1183	 61.98	0	1275242..1275967	-	241	150396411	-	Smed_1193	-	hypothetical protein
1184	 56.32	-1	1275930..1276103	-	57	150396412	-	Smed_1194	-	hypothetical protein
1185	 59.70	0	1276181..1276582	-	133	150396413	-	Smed_1195	-	hypothetical protein
1186	 62.26	0	1277378..1278058	+	226	150396414	-	Smed_1196	-	hypothetical protein
1187	 58.51	-1	1278066..1278629	-	187	150396415	-	Smed_1197	-	PilT domain-containing protein
1188	 60.36	0	1279081..1280253	-	390	150396416	-	Smed_1198	-	hypothetical protein
1189	 58.99	0	1280261..1280677	-	138	150396417	-	Smed_1199	-	MerR family transcriptional regulator
1190	 53.70	-2	1280952..1281113	+	53	150396418	-	Smed_1200	-	hypothetical protein
1191	 60.13	0	1281258..1281884	+	208	150396419	-	Smed_1201	-	hypothetical protein
1192	 60.46	0	1281895..1283778	+	627	150396420	-	Smed_1202	-	ATPase central domain-containing protein
1193	 61.36	0	1283788..1283919	+	43	150396421	-	Smed_1203	-	hypothetical protein
1194	 55.76	-2	1284179..1284985	+	268	150396422	-	Smed_1204	-	hypothetical protein
1195	 62.19	0	1285540..1287438	-	632	150396423	-	Smed_1205	-	DNA-cytosine methyltransferase
1196	 61.23	0	1287909..1289048	+	379	150396424	-	Smed_1206	-	hypothetical protein
1197	 60.24	0	1289077..1291845	-	922	150396425	-	Smed_1207	-	transcriptional regulator
1198	 63.53	0	1292044..1292457	+	137	150396426	-	Smed_1208	-	hypothetical protein
1199	 58.67	-1	1292493..1293305	+	270	150396427	-	Smed_1209	-	short chain dehydrogenase
1200	 57.74	-1	1293387..1293890	+	167	150396428	-	Smed_1210	-	ketosteroid isomerase-like protein
1201	 61.09	0	1293918..1294742	+	274	150396429	-	Smed_1211	-	short-chain dehydrogenase/reductase SDR
1202	 56.90	-1	1294901..1296712	+	603	150396430	-	Smed_1212	-	potassium efflux system protein
1203	 58.80	-1	1296732..1297913	+	393	150396431	-	Smed_1213	-	aminotransferase class V
1204	 55.41	-2	1298010..1298720	+	236	150396432	-	Smed_1214	-	ChaC family protein
1205	 60.35	0	1298896..1299180	-	94	150396433	-	Smed_1215	-	hypothetical protein
1206	 58.56	-1	1300036..1300911	-	291	150396434	-	Smed_1216	-	metallophosphoesterase
1207	 53.99	-2	1301015..1301653	-	212	150396435	-	Smed_1217	-	hypothetical protein
1208	 53.95	-2	1301676..1301966	-	96	150396436	-	Smed_1218	-	hypothetical protein
1209	 56.48	-1	1301983..1303857	-	624	150396437	-	Smed_1219	-	hypothetical protein
1210	 64.12	0	1303876..1304346	+	156	150396438	-	Smed_1220	-	transposase IS3/IS911 family protein
1211	 59.66	0	1304343..1304699	+	118	150396439	-	Smed_1221	-	IS66 Orf2 family protein
1212	 63.65	0	1304748..1305509	+	253	150396440	-	Smed_1222	-	transposase IS66
1213	 56.11	-1	1306022..1307281	+	419	150396441	-	Smed_1223	-	RNA-directed DNA polymerase (Reverse transcriptase)
1214	 61.40	0	1307335..1308207	+	290	150396442	-	Smed_1224	-	transposase IS66
1215	 58.87	0	1308204..1308767	+	187	150396443	-	Smed_1225	-	yecA family protein
1216	 56.06	-1	1308825..1308956	-	43	150396444	-	Smed_1226	-	hypothetical protein
1217	 56.70	-1	1308943..1309464	-	173	150396445	-	Smed_1227	-	hypothetical protein
1218	 53.61	-2	1309461..1310042	-	193	150396446	-	Smed_1228	-	hypothetical protein
1219	 59.93	0	1310585..1311133	-	182	150396447	-	Smed_1229	-	hypothetical protein
1220	 59.70	0	1311269..1312345	-	358	150396448	-	Smed_1230	-	patatin
1221	 59.55	0	1312302..1312793	-	163	150396449	-	Smed_1231	-	hypothetical protein
1222	 59.33	0	1312774..1314096	-	440	150396450	-	Smed_1232	-	hypothetical protein
1223	 62.50	0	1314286..1318077	-	1263	150396451	-	Smed_1233	-	ribonucleotide-diphosphate reductase subunit alpha
1224	 60.32	0	1318778..1319581	-	267	150396452	-	Smed_1234	-	hypothetical protein
1225	 62.42	0	1319713..1322634	-	973	150396453	uvrA	Smed_1235	-	excinuclease ABC subunit A
1226	 61.21	0	1322921..1323433	+	170	150396454	-	Smed_1236	-	single-strand DNA-binding protein
1227	 63.39	0	1323506..1325914	-	802	150396455	-	Smed_1237	-	TPR repeat-containing protein
1228	 59.76	0	1325958..1326971	-	337	150396456	-	Smed_1238	-	NapD-like protein
1229	 60.30	0	1327067..1328731	-	554	150396457	-	Smed_1239	-	sulfatase
1230	 61.59	0	1329065..1329694	-	209	150396458	-	Smed_1240	-	multiple antibiotic resistance (MarC)-related protein
1231	 62.63	0	1329990..1332785	+	931	150396459	-	Smed_1241	-	DNA gyrase subunit A
1232	 59.98	0	1332956..1333942	-	328	150396460	-	Smed_1242	-	lytic transglycosylase catalytic
1233	 60.98	0	1334015..1334524	-	169	150396461	-	Smed_1243	-	GCN5-related N-acetyltransferase
1234	 62.88	0	1334560..1335378	-	272	150396462	-	Smed_1244	-	aminoglycoside/hydroxyurea antibiotic resistance kinase
1235	 62.75	0	1335436..1336557	-	373	150396463	-	Smed_1245	-	NADH:flavin oxidoreductase/NADH oxidase
1236	 59.79	0	1336608..1336898	-	96	150396464	-	Smed_1246	-	regulatory protein ArsR
1237	 57.64	-1	1337537..1338433	-	298	150396465	-	Smed_1247	-	LysR family transcriptional regulator
1238	 60.62	0	1338665..1339639	-	324	150396466	-	Smed_1248	-	thioredoxin reductase
1239	 59.24	0	1340078..1340548	+	156	150396467	-	Smed_1249	-	AsnC family transcriptional regulator
1240	 59.41	0	1340646..1341458	+	270	150396468	-	Smed_1250	-	glycosyl transferase family protein
1241	 59.01	0	1341477..1342508	+	343	150396469	-	Smed_1251	-	phosphatidylserine decarboxylase
1242	 60.70	0	1342505..1343527	+	340	150396470	-	Smed_1252	-	phosphatidylserine decarboxylase
1243	 63.64	0	1343557..1344612	-	351	150396471	-	Smed_1253	-	glycosyl transferase group 1
1244	 58.07	-1	1344698..1345174	-	158	150396472	greA	Smed_1254	-	transcription elongation factor GreA
1245	 62.61	0	1345464..1346942	+	492	150396473	-	Smed_1255	-	major facilitator transporter
1246	 60.90	0	1346887..1347198	-	103	150396474	-	Smed_1256	-	hypothetical protein
1247	 62.40	0	1347330..1350821	-	1163	150396475	carB	Smed_1257	-	carbamoyl phosphate synthase large subunit
1248	 64.54	+1	1351031..1352065	-	344	150396476	-	Smed_1258	-	alcohol dehydrogenase
1249	 62.07	0	1352284..1353219	+	311	150396477	-	Smed_1259	-	protein of unknown function zinc metallopeptidase putative
1250	 62.36	0	1353263..1354261	-	332	150396478	-	Smed_1260	-	aldo/keto reductase
1251	 63.81	0	1354379..1355287	+	302	150396479	-	Smed_1261	-	LysR family transcriptional regulator
1252	 60.43	0	1355444..1356709	+	421	150396480	-	Smed_1262	-	major facilitator transporter
1253	 61.32	0	1356867..1358270	+	467	150396481	-	Smed_1263	-	MATE efflux family protein
1254	 60.44	0	1358823..1359368	+	181	150396482	coaD	Smed_1264	-	phosphopantetheine adenylyltransferase
1255	 60.91	0	1359393..1359983	+	196	150396483	-	Smed_1265	-	peptidyl-prolyl cis-trans isomerase cyclophilin type
1256	 60.59	0	1360008..1360517	+	169	150396484	-	Smed_1266	-	peptidyl-prolyl cis-trans isomerase cyclophilin type
1257	 62.70	0	1360595..1361677	+	360	150396485	queA	Smed_1267	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
1258	 62.51	0	1361678..1362808	+	376	150396486	tgt	Smed_1268	-	queuine tRNA-ribosyltransferase
1259	 65.65	+1	1362916..1363800	-	294	150396487	-	Smed_1269	-	short-chain dehydrogenase/reductase SDR
1260	 61.96	0	1363797..1364582	-	261	150396488	-	Smed_1270	-	hypothetical protein
61.69	MEAN

2.82	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.