IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
950	 41.77	-2	1094701..1096881	-	726	74311566	-	SSON_1019	-	hypothetical protein
951	 39.38	-2	1097211..1097921	-	236	74311567	-	SSON_1020	-	hypothetical protein
952	 36.58	-2	1100195..1101148	-	317	74311568	-	SSON_1021	-	hypothetical protein
953	 43.24	-2	1101667..1102191	-	174	74311569	-	SSON_1022	-	putative DNA methylase
954	 48.48	0	1103841..1104071	+	76	74311570	ycdF	SSON_1023	-	hypothetical protein
955	 53.98	0	1104435..1105829	-	464	74311571	ycdG	SSON_1024	-	putative transport protein
956	 60.35	+2	1105784..1106242	-	152	74311572	-	SSON_1025	-	hypothetical protein
957	 56.01	+1	1106289..1106879	-	196	74311573	-	SSON_1026	-	hypothetical protein
958	 58.18	+1	1106889..1107689	-	266	74311574	-	SSON_1027	-	putative acetyltransferase
959	 55.92	+1	1108871..1109605	-	244	74311575	-	SSON_1030	-	putative synthetase
960	 54.37	0	1110191..1110694	-	167	74311576	-	SSON_1031	-	IS1 ORF
961	 51.02	0	1111719..1112357	+	212	74311577	ycdC	SSON_1033	-	putative tet operon regulator
962	 56.70	+1	1112397..1116359	-	1320	74311578	putA	SSON_1034	-	trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
963	 53.61	0	1116781..1118289	+	502	74311579	putP	SSON_1035	-	major sodium/proline symporter
964	 54.52	0	1118946..1119785	+	279	74311580	ycdN	SSON_1036	-	high-affinity iron permease
965	 51.24	0	1119843..1120970	+	375