IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
946	 55.08	0	1089027..1089932	+	301	161986554	-	SSON_1015	-	insertion element IS2 transposase InsD
947	 41.69	-2	1089944..1091188	+	414	74311563	-	SSON_1016	-	hypothetical protein
948	 50.93	0	1091312..1092067	-	251	74311564	-	SSON_1017	-	putative transposase subunit
949	 54.04	0	1092084..1093619	-	511	74311565	-	SSON_1018	-	putative transposase
950	 41.77	-2	1094701..1096881	-	726	74311566	-	SSON_1019	-	hypothetical protein
951	 39.38	-2	1097211..1097921	-	236	74311567	-	SSON_1020	-	hypothetical protein
952	 36.58	-2	1100195..1101148	-	317	74311568	-	SSON_1021	-	hypothetical protein
953	 43.24	-2	1101667..1102191	-	174	74311569	-	SSON_1022	-	putative DNA methylase
954	 48.48	0	1103841..1104071	+	76	74311570	ycdF	SSON_1023	-	hypothetical protein
955	 53.98	0	1104435..1105829	-	464	74311571	ycdG	SSON_1024	-	putative transport protein
956	 60.35	+2	1105784..1106242	-	152	74311572	-	SSON_1025	-	hypothetical protein
957	 56.01	+1	1106289..1106879	-	196	74311573	-	SSON_1026	-	hypothetical protein
958	 58.18	+1	1106889..1107689	-	266	74311574	-	SSON_1027	-	putative acetyltransferase
959	 55.92	+1	1108871..1109605	-	244	74311575	-	SSON_1030	-	putative synthetase
960	 54.37	0	1110191..1110694	-	167	74311576	-	SSON_1031	-	IS1 ORF
961	 51.02	0	1111719..1112357	+	212