IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
935	 52.77	0	1075909..1076937	+	342	74311551	torT	SSON_1002	-	periplasmic sensory protein associated with the TorRS two-component regulatory system
936	 52.53	0	1076910..1077602	-	230	74311552	torR	SSON_1003	-	DNA-binding transcriptional regulator TorR
937	 51.75	0	1077722..1078894	+	390	74311553	torC	SSON_1004	-	trimethylamine N-oxide reductase, cytochrome c-type subunit
938	 53.92	0	1081944..1082249	-	101	74311554	yccD	SSON_1007	-	chaperone-modulator protein CbpM
939	 52.99	0	1082249..1083169	-	306	74311555	cbpA	SSON_1008	-	curved DNA-binding protein CbpA
940	 53.00	0	1083494..1084525	+	343	74311556	-	SSON_1009	-	IS630 orf
941	 32.44	-2	1084585..1085145	+	186	74311557	-	SSON_1010	-	hypothetical protein
942	 34.90	-2	1085348..1085731	+	127	74311558	-	SSON_1011	-	hypothetical protein
943	 51.37	0	1086025..1087266	+	413	74311559	agp	SSON_1012	-	glucose-1-phosphatase/inositol phosphatase
944	 47.37	-1	1087304..1087531	-	75	74311560	yccJ	SSON_1013	-	hypothetical protein
945	 53.30	0	1087552..1088157	-	201	74311561	wrbA	SSON_1014	-	TrpR binding protein WrbA
946	 55.08	0	1089027..1089932	+	301	161986554	-	SSON_1015	-	insertion element IS2 transposase InsD
947	 41.69	-2	1089944..1091188	+	414	74311563	-	SSON_1016	-	hypothetical protein
948	 50.93	0	1091312..1092067	-	251	74311564	-	SSON_1017	-	putative transposase subunit
949	 54.04	0	1092084..1093619	-	511	74311565	-	SSON_1018	-	putative transposase
950	 41.77	-2	1094701..1096881	-	726