IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
932	 41.56	-2	1071495..1071725	+	76	74311548	sfa	SSON_0998	-	cold shock gene
933	 39.66	-2	1071715..1071888	+	57	74311549	gnsA	SSON_0999	-	GnsA
934	 54.06	0	1073082..1075826	-	914	161986555	torS	SSON_1001	-	hybrid sensory histidine kinase TorS
935	 52.77	0	1075909..1076937	+	342	74311551	torT	SSON_1002	-	periplasmic sensory protein associated with the TorRS two-component regulatory system
936	 52.53	0	1076910..1077602	-	230	74311552	torR	SSON_1003	-	DNA-binding transcriptional regulator TorR
937	 51.75	0	1077722..1078894	+	390	74311553	torC	SSON_1004	-	trimethylamine N-oxide reductase, cytochrome c-type subunit
938	 53.92	0	1081944..1082249	-	101	74311554	yccD	SSON_1007	-	chaperone-modulator protein CbpM
939	 52.99	0	1082249..1083169	-	306	74311555	cbpA	SSON_1008	-	curved DNA-binding protein CbpA
940	 53.00	0	1083494..1084525	+	343	74311556	-	SSON_1009	-	IS630 orf
941	 32.44	-2	1084585..1085145	+	186	74311557	-	SSON_1010	-	hypothetical protein
942	 34.90	-2	1085348..1085731	+	127	74311558	-	SSON_1011	-	hypothetical protein
943	 51.37	0	1086025..1087266	+	413	74311559	agp	SSON_1012	-	glucose-1-phosphatase/inositol phosphatase
944	 47.37	-1	1087304..1087531	-	75	74311560	yccJ	SSON_1013	-	hypothetical protein
945	 53.30	0	1087552..1088157	-	201	74311561	wrbA	SSON_1014	-	TrpR binding protein WrbA
946	 55.08	0	1089027..1089932	+	301	161986554	-	SSON_1015	-	insertion element IS2 transposase InsD
947	 41.69	-2	1089944..1091188	+	414