IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
926	 52.21	0	1067588..1068334	-	248	74311542	ymcB	SSON_0992	-	hypothetical protein
927	 47.75	0	1068331..1068975	-	214	74311543	ymcC	SSON_0993	-	putative regulator
928	 55.25	0	1069082..1069405	-	107	74311544	ymcD	SSON_0994	-	hypothetical protein
929	 46.95	-1	1069834..1070046	-	70	74311545	cspH	SSON_0995	-	cold shock-like protein
930	 54.37	0	1070143..1070646	-	167	74311546	-	SSON_0996	-	IS1 ORF
931	 44.13	-1	1071109..1071321	+	70	74311547	cspG	SSON_0997	-	cold shock protein CspG
932	 41.56	-2	1071495..1071725	+	76	74311548	sfa	SSON_0998	-	cold shock gene
933	 39.66	-2	1071715..1071888	+	57	74311549	gnsA	SSON_0999	-	GnsA
934	 54.06	0	1073082..1075826	-	914	161986555	torS	SSON_1001	-	hybrid sensory histidine kinase TorS
935	 52.77	0	1075909..1076937	+	342	74311551	torT	SSON_1002	-	periplasmic sensory protein associated with the TorRS two-component regulatory system
936	 52.53	0	1076910..1077602	-	230	74311552	torR	SSON_1003	-	DNA-binding transcriptional regulator TorR
937	 51.75	0	1077722..1078894	+	390	74311553	torC	SSON_1004	-	trimethylamine N-oxide reductase, cytochrome c-type subunit
938	 53.92	0	1081944..1082249	-	101	74311554	yccD	SSON_1007	-	chaperone-modulator protein CbpM
939	 52.99	0	1082249..1083169	-	306	74311555	cbpA	SSON_1008	-	curved DNA-binding protein CbpA
940	 53.00	0	1083494..1084525	+	343	74311556	-	SSON_1009	-	IS630 orf
941	 32.44	-2	1084585..1085145	+	186