IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
912	 53.68	0	1051003..1051587	+	194	74311528	-	SSON_0977	-	IS1 ORF
913	 55.94	+1	1051783..1052901	+	372	74311529	hyaA	SSON_0978	-	hydrogenase-1 small subunit
914	 56.52	+1	1052898..1054691	+	597	74311530	hyaB	SSON_0979	-	hydrogenase 1 large subunit
915	 58.16	+1	1055413..1056000	+	195	74311531	hyaD	SSON_0981	-	hydrogenase 1 maturation protease
916	 55.46	0	1055997..1056335	+	112	74311532	hyaE	SSON_0982	-	hydrogenase-1 operon protein HyaE
917	 55.01	0	1056392..1057249	+	285	74311533	hyaF	SSON_0983	-	nickel incorporation into hydrogenase-1 proteins
918	 53.85	0	1057383..1058927	+	514	74311534	appC	SSON_0984	-	third cytochrome oxidase, subunit I
919	 53.21	0	1058939..1060075	+	378	74311535	appB	SSON_0985	-	third cytochrome oxidase, subunit II
920	 46.24	-1	1060088..1060180	+	30	74311536	yccB	SSON_0986	-	hypothetical protein
921	 53.89	0	1060260..1061558	+	432	74311537	appA	SSON_0987	-	phosphoanhydride phosphorylase
922	 50.57	0	1061673..1063853	-	726	74311538	yccC	SSON_0988	-	cryptic autophosphorylating protein tyrosine kinase Etk
923	 51.90	0	1063873..1064319	-	148	161986556	etp	SSON_0989	-	phosphotyrosine-protein phosphatase
924	 50.96	0	1064307..1065446	-	379	74311540	yccZ	SSON_0990	-	putative function in exopolysaccharide production
925	 52.03	0	1065492..1067588	-	698	74311541	ymcA	SSON_0991	-	hypothetical protein
926	 52.21	0	1067588..1068334	-	248	74311542	ymcB	SSON_0992	-	hypothetical protein
927	 47.75	0	1068331..1068975	-	214