IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
905	 50.53	0	1045202..1045864	-	220	74311521	-	SSON_0968	-	hypothetical protein
906	 54.17	0	1045942..1046445	-	167	74311522	-	SSON_0969	-	IS1 ORF
907	 53.13	0	1046733..1047227	+	164	74311523	-	SSON_0970	-	hypothetical protein
908	 53.39	0	1047272..1047640	-	122	74311524	yccV	SSON_0971	-	hypothetical protein
909	 52.69	0	1048932..1049210	+	92	74311525	-	SSON_0973	-	hypothetical protein
910	 46.67	-1	1049207..1049536	-	109	161986557	yccK	SSON_0974	-	sulfurtransferase TusE
911	 51.06	0	1049627..1050286	-	219	74311527	yccA	SSON_0975	-	hypothetical protein
912	 53.68	0	1051003..1051587	+	194	74311528	-	SSON_0977	-	IS1 ORF
913	 55.94	+1	1051783..1052901	+	372	74311529	hyaA	SSON_0978	-	hydrogenase-1 small subunit
914	 56.52	+1	1052898..1054691	+	597	74311530	hyaB	SSON_0979	-	hydrogenase 1 large subunit
915	 58.16	+1	1055413..1056000	+	195	74311531	hyaD	SSON_0981	-	hydrogenase 1 maturation protease
916	 55.46	0	1055997..1056335	+	112	74311532	hyaE	SSON_0982	-	hydrogenase-1 operon protein HyaE
917	 55.01	0	1056392..1057249	+	285	74311533	hyaF	SSON_0983	-	nickel incorporation into hydrogenase-1 proteins
918	 53.85	0	1057383..1058927	+	514	74311534	appC	SSON_0984	-	third cytochrome oxidase, subunit I
919	 53.21	0	1058939..1060075	+	378	74311535	appB	SSON_0985	-	third cytochrome oxidase, subunit II
920	 46.24	-1	1060088..1060180	+	30	74311536	yccB	SSON_0986	-	hypothetical protein
921	 53.89	0	1060260..1061558	+	432	74311537	appA	SSON_0987	-	phosphoanhydride phosphorylase
922	 50.57	0	1061673..1063853	-	726	74311538	yccC	SSON_0988	-	cryptic autophosphorylating protein tyrosine kinase Etk
923	 51.90	0	1063873..1064319	-	148	161986556	etp	SSON_0989	-	phosphotyrosine-protein phosphatase
924	 50.96	0	1064307..1065446	-	379	74311540	yccZ	SSON_0990	-	putative function in exopolysaccharide production
925	 52.03	0	1065492..1067588	-	698	74311541	ymcA	SSON_0991	-	hypothetical protein
926	 52.21	0	1067588..1068334	-	248	74311542	ymcB	SSON_0992	-	hypothetical protein
927	 47.75	0	1068331..1068975	-	214	74311543	ymcC	SSON_0993	-	putative regulator
928	 55.25	0	1069082..1069405	-	107	74311544	ymcD	SSON_0994	-	hypothetical protein
929	 46.95	-1	1069834..1070046	-	70	74311545	cspH	SSON_0995	-	cold shock-like protein
930	 54.37	0	1070143..1070646	-	167	74311546	-	SSON_0996	-	IS1 ORF
931	 44.13	-1	1071109..1071321	+	70	74311547	cspG	SSON_0997	-	cold shock protein CspG
932	 41.56	-2	1071495..1071725	+	76	74311548	sfa	SSON_0998	-	cold shock gene
933	 39.66	-2	1071715..1071888	+	57	74311549	gnsA	SSON_0999	-	GnsA
934	 54.06	0	1073082..1075826	-	914	161986555	torS	SSON_1001	-	hybrid sensory histidine kinase TorS
935	 52.77	0	1075909..1076937	+	342	74311551	torT	SSON_1002	-	periplasmic sensory protein associated with the TorRS two-component regulatory system
936	 52.53	0	1076910..1077602	-	230	74311552	torR	SSON_1003	-	DNA-binding transcriptional regulator TorR
937	 51.75	0	1077722..1078894	+	390	74311553	torC	SSON_1004	-	trimethylamine N-oxide reductase, cytochrome c-type subunit
938	 53.92	0	1081944..1082249	-	101	74311554	yccD	SSON_1007	-	chaperone-modulator protein CbpM
939	 52.99	0	1082249..1083169	-	306	74311555	cbpA	SSON_1008	-	curved DNA-binding protein CbpA
940	 53.00	0	1083494..1084525	+	343	74311556	-	SSON_1009	-	IS630 orf
941	 32.44	-2	1084585..1085145	+	186	74311557	-	SSON_1010	-	hypothetical protein
942	 34.90	-2	1085348..1085731	+	127	74311558	-	SSON_1011	-	hypothetical protein
943	 51.37	0	1086025..1087266	+	413	74311559	agp	SSON_1012	-	glucose-1-phosphatase/inositol phosphatase
944	 47.37	-1	1087304..1087531	-	75	74311560	yccJ	SSON_1013	-	hypothetical protein
945	 53.30	0	1087552..1088157	-	201	74311561	wrbA	SSON_1014	-	TrpR binding protein WrbA
946	 55.08	0	1089027..1089932	+	301	161986554	-	SSON_1015	-	insertion element IS2 transposase InsD
947	 41.69	-2	1089944..1091188	+	414	74311563	-	SSON_1016	-	hypothetical protein
948	 50.93	0	1091312..1092067	-	251	74311564	-	SSON_1017	-	putative transposase subunit
949	 54.04	0	1092084..1093619	-	511	74311565	-	SSON_1018	-	putative transposase
950	 41.77	-2	1094701..1096881	-	726	74311566	-	SSON_1019	-	hypothetical protein
951	 39.38	-2	1097211..1097921	-	236	74311567	-	SSON_1020	-	hypothetical protein
952	 36.58	-2	1100195..1101148	-	317	74311568	-	SSON_1021	-	hypothetical protein
953	 43.24	-2	1101667..1102191	-	174	74311569	-	SSON_1022	-	putative DNA methylase
954	 48.48	0	1103841..1104071	+	76	74311570	ycdF	SSON_1023	-	hypothetical protein
955	 53.98	0	1104435..1105829	-	464	74311571	ycdG	SSON_1024	-	putative transport protein
956	 60.35	+2	1105784..1106242	-	152	74311572	-	SSON_1025	-	hypothetical protein
957	 56.01	+1	1106289..1106879	-	196	74311573	-	SSON_1026	-	hypothetical protein
958	 58.18	+1	1106889..1107689	-	266	74311574	-	SSON_1027	-	putative acetyltransferase
959	 55.92	+1	1108871..1109605	-	244	74311575	-	SSON_1030	-	putative synthetase
960	 54.37	0	1110191..1110694	-	167	74311576	-	SSON_1031	-	IS1 ORF
961	 51.02	0	1111719..1112357	+	212	74311577	ycdC	SSON_1033	-	putative tet operon regulator
962	 56.70	+1	1112397..1116359	-	1320	74311578	putA	SSON_1034	-	trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
963	 53.61	0	1116781..1118289	+	502	74311579	putP	SSON_1035	-	major sodium/proline symporter
964	 54.52	0	1118946..1119785	+	279	74311580	ycdN	SSON_1036	-	high-affinity iron permease
965	 51.24	0	1119843..1120970	+	375	74311581	ycdO	SSON_1037	-	hypothetical protein
966	 53.62	0	1120976..1122247	+	423	74311582	ycdB	SSON_1038	-	hypothetical protein
967	 52.21	0	1122592..1123656	+	354	74311583	phoH	SSON_1039	-	hypothetical protein
968	 43.52	-1	1124237..1124923	+	228	74311584	-	SSON_1040	-	hypothetical protein
969	 51.02	0	1125477..1126454	+	325	74311585	ycdW	SSON_1042	-	putative dehydrogenase
970	 48.24	0	1126509..1127246	+	245	74311586	ycdX	SSON_1043	-	putative hydrolase
971	 53.69	0	1127270..1127824	+	184	74311587	ycdY	SSON_1044	-	putative oxidoreductase component
972	 54.07	0	1127878..1128417	+	179	74311588	ycdZ	SSON_1045	-	hypothetical protein
973	 49.40	0	1128482..1129315	-	277	74311589	csgG	SSON_1046	-	curli production assembly/transport component, 2nd curli operon
974	 41.97	-2	1129342..1129758	-	138	74311590	csgF	SSON_1047	-	curli assembly protein CsgF
975	 43.08	-2	1129783..1130172	-	129	74311591	csgE	SSON_1048	-	curli assembly protein CsgE
976	 54.37	0	1130941..1131444	+	167	74311592	-	SSON_1049	-	IS1 ORF
977	 54.37	0	1132110..1132613	+	167	74311593	-	SSON_1051	-	IS1 ORF
978	 41.67	-2	1133134..1133589	+	151	74311594	csgB	SSON_1052	-	curlin minor subunit
979	 50.77	0	1133630..1134082	+	150	74311595	csgA	SSON_1053	-	cryptic curlin major subunit
980	 53.03	0	1134198..1135370	+	390	74311596	-	SSON_1054	-	IS21 ORF1
981	 52.63	0	1135370..1136167	+	265	74311597	-	SSON_1055	-	IS21 ORF2
982	 43.24	-2	1136274..1136606	+	110	74311598	csgC	SSON_1056	-	putative autoagglutination protein
983	 43.27	-1	1136727..1137038	+	103	74311599	-	SSON_1057	-	hypothetical protein
984	 51.87	0	1137133..1137666	+	177	74311600	-	SSON_1058	-	hypothetical protein
985	 50.54	0	1137608..1139089	+	493	74311601	ymdC	SSON_1059	-	putative synthase
986	 43.78	-1	1139097..1140254	-	385	74311602	mdoC	SSON_1060	-	glucans biosynthesis protein
987	 49.87	0	1140649..1142184	+	511	74311603	mdoG	SSON_1061	-	glucan biosynthesis protein G
988	 55.03	0	1142177..1144720	+	847	74311604	mdoH	SSON_1062	-	glucosyltransferase MdoH
989	 53.90	0	1144933..1146279	+	448	74311605	-	SSON_1063	-	IS4 orf
990	 51.75	0	1146332..1146559	+	75	74311606	yceK	SSON_1064	-	hypothetical protein
991	 50.26	0	1146560..1146937	-	125	74311607	msyB	SSON_1065	-	hypothetical protein
992	 45.45	-1	1146964..1147062	-	32	74311608	-	SSON_1066	-	hypothetical protein
993	 52.00	0	1147017..1148066	-	349	74311609	yceE	SSON_1067	-	putative transport protein
994	 57.73	+1	1149266..1150462	-	398	74311610	-	SSON_1068	-	ISSfl2 ORF
995	 50.93	0	1150820..1151575	-	251	74311611	-	SSON_1069	-	putative transposase subunit
996	 53.97	0	1151592..1153127	-	511	74311612	-	SSON_1070	-	putative transposase
997	 55.19	0	1154015..1154920	-	301	161986553	-	SSON_1071	-	insertion element IS2 transposase InsD
998	 53.01	0	1154878..1155243	-	121	74311614	-	SSON_1072	-	insertion sequence 2 OrfA protein
999	 49.66	0	1155526..1155966	+	146	74311615	-	SSON_1073	-	IS600 ORF2
1000	 52.77	0	1156514..1157434	-	306	74311616	htrB	SSON_1074	-	lipid A biosynthesis lauroyl acyltransferase
1001	 49.67	0	1157659..1158711	+	350	74311617	yceA	SSON_1075	-	hypothetical protein
1002	 47.40	-1	1158753..1159328	-	191	74311618	yceI	SSON_1076	-	hypothetical protein
1003	 51.32	0	1159332..1159898	-	188	74311619	-	SSON_1077	-	putative cytochrome
1004	 54.37	0	1160176..1160679	+	167	74311620	-	SSON_1078	-	IS1 ORF
51.65	MEAN

4.20	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.