IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
891	 52.15	0	1030094..1031347	+	417	74311507	pqiA	SSON_0954	-	paraquat-inducible protein A
892	 49.91	0	1031352..1032992	+	546	74311508	pqiB	SSON_0955	-	paraquat-inducible protein B
893	 52.28	0	1033004..1033552	+	182	74311509	ymbA	SSON_0956	-	hypothetical protein
894	 54.17	0	1033808..1033975	+	55	74311510	rmf	SSON_0957	-	ribosome modulation factor
895	 52.22	0	1034045..1034563	-	172	74311511	fabA	SSON_0958	-	3-hydroxydecanoyl-(acyl carrier protein) dehydratase
896	 51.85	0	1034632..1036392	-	586	74311512	-	SSON_0959	-	putative ATP-dependent protease
897	 46.36	-1	1036578..1037030	+	150	74311513	ycbG	SSON_0960	-	hypothetical protein
898	 53.79	0	1037106..1038146	-	346	74311514	ompA	SSON_0961	-	outer membrane protein A
899	 48.24	0	1038501..1039010	-	169	74311515	sulA	SSON_0962	-	SOS cell division inhibitor
900	 48.10	0	1039229..1039858	+	209	74311516	-	SSON_0963	-	hypothetical protein
901	 52.15	0	1039821..1041983	-	720	74311517	-	SSON_0964	-	hypothetical protein
902	 48.10	0	1041993..1042439	-	148	74311518	yccF	SSON_0965	-	hypothetical protein
903	 52.85	0	1042562..1044616	+	684	74311519	helD	SSON_0966	-	DNA helicase IV
904	 52.51	0	1044648..1045106	-	152	161986558	mgsA	SSON_0967	-	methylglyoxal synthase
905	 50.53	0	1045202..1045864	-	220	74311521	-	SSON_0968	-	hypothetical protein
906	 54.17	0	1045942..1046445	-	167