IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
876	 55.56	0	1011352..1012143	-	263	74311492	ssuC	SSON_0937	-	alkanesulfonate transporter permease subunit
877	 52.29	0	1013299..1014258	-	319	161986559	ycbO	SSON_0939	-	alkanesulfonate transporter substrate-binding subunit
878	 54.17	0	1014251..1014826	-	191	74311494	ycbP	SSON_0940	-	NAD(P)H-dependent FMN reductase
879	 54.37	0	1015398..1015901	+	167	74311495	-	SSON_0941	-	IS1 ORF
880	 43.48	-1	1015950..1016501	+	183	74311496	ycbQ	SSON_0942	-	putative fimbrial-like protein
881	 45.16	-1	1016584..1017285	+	233	74311497	ycbR	SSON_0943	-	putative chaperone
882	 48.55	0	1019900..1020970	+	356	74311498	-	SSON_0945	-	FimH-like protein
883	 46.96	-1	1020982..1021524	+	180	74311499	-	SSON_0946	-	putative fimbrial-like protein
884	 47.70	0	1021484..1022047	+	187	74311500	-	SSON_0947	-	putative fimbrial-like protein
885	 51.90	0	1022013..1022750	+	245	74311501	ycbF	SSON_0948	-	hypotheical protein
886	 46.98	-1	1022861..1023871	+	336	74311502	pyrD	SSON_0949	-	dihydroorotate dehydrogenase 2
887	 49.74	0	1024009..1024587	+	192	74311503	ycbW	SSON_0950	-	hypothetical protein
888	 50.45	0	1024584..1025693	-	369	74311504	-	SSON_0951	-	hypothetical protein
889	 54.24	0	1025937..1028045	+	702	74311505	ycbY	SSON_0952	-	23S rRNA m(2)G2445 methyltransferase
890	 52.62	0	1028057..1029964	+	635	74311506	uup	SSON_0953	-	ABC transporter ATPase component
891	 52.15	0	1030094..1031347	+	417