version 1.0
Shigella sonnei Ss046, complete genome - 1..4825265 4219 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 876 55.56 0 1011352..1012143 - 263 74311492 ssuC SSON_0937 - alkanesulfonate transporter permease subunit 877 52.29 0 1013299..1014258 - 319 161986559 ycbO SSON_0939 - alkanesulfonate transporter substrate-binding subunit 878 54.17 0 1014251..1014826 - 191 74311494 ycbP SSON_0940 - NAD(P)H-dependent FMN reductase 879 54.37 0 1015398..1015901 + 167 74311495 - SSON_0941 - IS1 ORF 880 43.48 -1 1015950..1016501 + 183 74311496 ycbQ SSON_0942 - putative fimbrial-like protein 881 45.16 -1 1016584..1017285 + 233 74311497 ycbR SSON_0943 - putative chaperone 882 48.55 0 1019900..1020970 + 356 74311498 - SSON_0945 - FimH-like protein 883 46.96 -1 1020982..1021524 + 180 74311499 - SSON_0946 - putative fimbrial-like protein 884 47.70 0 1021484..1022047 + 187 74311500 - SSON_0947 - putative fimbrial-like protein 885 51.90 0 1022013..1022750 + 245 74311501 ycbF SSON_0948 - hypotheical protein 886 46.98 -1 1022861..1023871 + 336 74311502 pyrD SSON_0949 - dihydroorotate dehydrogenase 2 887 49.74 0 1024009..1024587 + 192 74311503 ycbW SSON_0950 - hypothetical protein 888 50.45 0 1024584..1025693 - 369 74311504 - SSON_0951 - hypothetical protein 889 54.24 0 1025937..1028045 + 702 74311505 ycbY SSON_0952 - 23S rRNA m(2)G2445 methyltransferase 890 52.62 0 1028057..1029964 + 635 74311506 uup SSON_0953 - ABC transporter ATPase component 891 52.15 0 1030094..1031347 + 417 74311507 pqiA SSON_0954 - paraquat-inducible protein A 892 49.91 0 1031352..1032992 + 546 74311508 pqiB SSON_0955 - paraquat-inducible protein B 893 52.28 0 1033004..1033552 + 182 74311509 ymbA SSON_0956 - hypothetical protein 894 54.17 0 1033808..1033975 + 55 74311510 rmf SSON_0957 - ribosome modulation factor 895 52.22 0 1034045..1034563 - 172 74311511 fabA SSON_0958 - 3-hydroxydecanoyl-(acyl carrier protein) dehydratase 896 51.85 0 1034632..1036392 - 586 74311512 - SSON_0959 - putative ATP-dependent protease 897 46.36 -1 1036578..1037030 + 150 74311513 ycbG SSON_0960 - hypothetical protein 898 53.79 0 1037106..1038146 - 346 74311514 ompA SSON_0961 - outer membrane protein A 899 48.24 0 1038501..1039010 - 169 74311515 sulA SSON_0962 - SOS cell division inhibitor 900 48.10 0 1039229..1039858 + 209 74311516 - SSON_0963 - hypothetical protein 901 52.15 0 1039821..1041983 - 720 74311517 - SSON_0964 - hypothetical protein 902 48.10 0 1041993..1042439 - 148 74311518 yccF SSON_0965 - hypothetical protein 903 52.85 0 1042562..1044616 + 684 74311519 helD SSON_0966 - DNA helicase IV 904 52.51 0 1044648..1045106 - 152 161986558 mgsA SSON_0967 - methylglyoxal synthase 905 50.53 0 1045202..1045864 - 220 74311521 - SSON_0968 - hypothetical protein 906 54.17 0 1045942..1046445 - 167 74311522 - SSON_0969 - IS1 ORF 907 53.13 0 1046733..1047227 + 164 74311523 - SSON_0970 - hypothetical protein 908 53.39 0 1047272..1047640 - 122 74311524 yccV SSON_0971 - hypothetical protein 909 52.69 0 1048932..1049210 + 92 74311525 - SSON_0973 - hypothetical protein 910 46.67 -1 1049207..1049536 - 109 161986557 yccK SSON_0974 - sulfurtransferase TusE 911 51.06 0 1049627..1050286 - 219 74311527 yccA SSON_0975 - hypothetical protein 912 53.68 0 1051003..1051587 + 194 74311528 - SSON_0977 - IS1 ORF 913 55.94 +1 1051783..1052901 + 372 74311529 hyaA SSON_0978 - hydrogenase-1 small subunit 914 56.52 +1 1052898..1054691 + 597 74311530 hyaB SSON_0979 - hydrogenase 1 large subunit 915 58.16 +1 1055413..1056000 + 195 74311531 hyaD SSON_0981 - hydrogenase 1 maturation protease 916 55.46 0 1055997..1056335 + 112 74311532 hyaE SSON_0982 - hydrogenase-1 operon protein HyaE 917 55.01 0 1056392..1057249 + 285 74311533 hyaF SSON_0983 - nickel incorporation into hydrogenase-1 proteins 918 53.85 0 1057383..1058927 + 514 74311534 appC SSON_0984 - third cytochrome oxidase, subunit I 919 53.21 0 1058939..1060075 + 378 74311535 appB SSON_0985 - third cytochrome oxidase, subunit II 920 46.24 -1 1060088..1060180 + 30 74311536 yccB SSON_0986 - hypothetical protein 921 53.89 0 1060260..1061558 + 432 74311537 appA SSON_0987 - phosphoanhydride phosphorylase 922 50.57 0 1061673..1063853 - 726 74311538 yccC SSON_0988 - cryptic autophosphorylating protein tyrosine kinase Etk 923 51.90 0 1063873..1064319 - 148 161986556 etp SSON_0989 - phosphotyrosine-protein phosphatase 924 50.96 0 1064307..1065446 - 379 74311540 yccZ SSON_0990 - putative function in exopolysaccharide production 925 52.03 0 1065492..1067588 - 698 74311541 ymcA SSON_0991 - hypothetical protein 926 52.21 0 1067588..1068334 - 248 74311542 ymcB SSON_0992 - hypothetical protein 927 47.75 0 1068331..1068975 - 214 74311543 ymcC SSON_0993 - putative regulator 928 55.25 0 1069082..1069405 - 107 74311544 ymcD SSON_0994 - hypothetical protein 929 46.95 -1 1069834..1070046 - 70 74311545 cspH SSON_0995 - cold shock-like protein 930 54.37 0 1070143..1070646 - 167 74311546 - SSON_0996 - IS1 ORF 931 44.13 -1 1071109..1071321 + 70 74311547 cspG SSON_0997 - cold shock protein CspG 932 41.56 -2 1071495..1071725 + 76 74311548 sfa SSON_0998 - cold shock gene 933 39.66 -2 1071715..1071888 + 57 74311549 gnsA SSON_0999 - GnsA 934 54.06 0 1073082..1075826 - 914 161986555 torS SSON_1001 - hybrid sensory histidine kinase TorS 935 52.77 0 1075909..1076937 + 342 74311551 torT SSON_1002 - periplasmic sensory protein associated with the TorRS two-component regulatory system 936 52.53 0 1076910..1077602 - 230 74311552 torR SSON_1003 - DNA-binding transcriptional regulator TorR 937 51.75 0 1077722..1078894 + 390 74311553 torC SSON_1004 - trimethylamine N-oxide reductase, cytochrome c-type subunit 938 53.92 0 1081944..1082249 - 101 74311554 yccD SSON_1007 - chaperone-modulator protein CbpM 939 52.99 0 1082249..1083169 - 306 74311555 cbpA SSON_1008 - curved DNA-binding protein CbpA 940 53.00 0 1083494..1084525 + 343 74311556 - SSON_1009 - IS630 orf 941 32.44 -2 1084585..1085145 + 186 74311557 - SSON_1010 - hypothetical protein 942 34.90 -2 1085348..1085731 + 127 74311558 - SSON_1011 - hypothetical protein 943 51.37 0 1086025..1087266 + 413 74311559 agp SSON_1012 - glucose-1-phosphatase/inositol phosphatase 944 47.37 -1 1087304..1087531 - 75 74311560 yccJ SSON_1013 - hypothetical protein 945 53.30 0 1087552..1088157 - 201 74311561 wrbA SSON_1014 - TrpR binding protein WrbA 946 55.08 0 1089027..1089932 + 301 161986554 - SSON_1015 - insertion element IS2 transposase InsD 947 41.69 -2 1089944..1091188 + 414 74311563 - SSON_1016 - hypothetical protein 948 50.93 0 1091312..1092067 - 251 74311564 - SSON_1017 - putative transposase subunit 949 54.04 0 1092084..1093619 - 511 74311565 - SSON_1018 - putative transposase 950 41.77 -2 1094701..1096881 - 726 74311566 - SSON_1019 - hypothetical protein 951 39.38 -2 1097211..1097921 - 236 74311567 - SSON_1020 - hypothetical protein 952 36.58 -2 1100195..1101148 - 317 74311568 - SSON_1021 - hypothetical protein 953 43.24 -2 1101667..1102191 - 174 74311569 - SSON_1022 - putative DNA methylase 954 48.48 0 1103841..1104071 + 76 74311570 ycdF SSON_1023 - hypothetical protein 955 53.98 0 1104435..1105829 - 464 74311571 ycdG SSON_1024 - putative transport protein 956 60.35 +2 1105784..1106242 - 152 74311572 - SSON_1025 - hypothetical protein 957 56.01 +1 1106289..1106879 - 196 74311573 - SSON_1026 - hypothetical protein 958 58.18 +1 1106889..1107689 - 266 74311574 - SSON_1027 - putative acetyltransferase 959 55.92 +1 1108871..1109605 - 244 74311575 - SSON_1030 - putative synthetase 960 54.37 0 1110191..1110694 - 167 74311576 - SSON_1031 - IS1 ORF 961 51.02 0 1111719..1112357 + 212 74311577 ycdC SSON_1033 - putative tet operon regulator 962 56.70 +1 1112397..1116359 - 1320 74311578 putA SSON_1034 - trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 963 53.61 0 1116781..1118289 + 502 74311579 putP SSON_1035 - major sodium/proline symporter 964 54.52 0 1118946..1119785 + 279 74311580 ycdN SSON_1036 - high-affinity iron permease 965 51.24 0 1119843..1120970 + 375 74311581 ycdO SSON_1037 - hypothetical protein 966 53.62 0 1120976..1122247 + 423 74311582 ycdB SSON_1038 - hypothetical protein 967 52.21 0 1122592..1123656 + 354 74311583 phoH SSON_1039 - hypothetical protein 968 43.52 -1 1124237..1124923 + 228 74311584 - SSON_1040 - hypothetical protein 969 51.02 0 1125477..1126454 + 325 74311585 ycdW SSON_1042 - putative dehydrogenase 970 48.24 0 1126509..1127246 + 245 74311586 ycdX SSON_1043 - putative hydrolase 971 53.69 0 1127270..1127824 + 184 74311587 ycdY SSON_1044 - putative oxidoreductase component 972 54.07 0 1127878..1128417 + 179 74311588 ycdZ SSON_1045 - hypothetical protein 973 49.40 0 1128482..1129315 - 277 74311589 csgG SSON_1046 - curli production assembly/transport component, 2nd curli operon 974 41.97 -2 1129342..1129758 - 138 74311590 csgF SSON_1047 - curli assembly protein CsgF 975 43.08 -2 1129783..1130172 - 129 74311591 csgE SSON_1048 - curli assembly protein CsgE 51.65 MEAN 4.20 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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