IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
865	 55.88	+1	992033..996493	+	1486	74311481	mukB	SSON_0926	-	cell division protein MukB
866	 53.90	0	996638..997984	+	448	74311482	-	SSON_0927	-	IS4 orf
867	 53.19	0	998192..1000039	+	615	74311483	ycbB	SSON_0928	-	hypothetical protein
868	 49.73	0	1000220..1000768	+	182	74311484	ycbK	SSON_0929	-	hypothetical protein
869	 51.54	0	1000795..1001442	+	215	74311485	ycbL	SSON_0930	-	hypothetical protein
870	 52.23	0	1001664..1002854	-	396	74311486	aspC	SSON_0931	-	aromatic amino acid aminotransferase
871	 47.84	0	1003039..1004127	-	362	74311487	ompF	SSON_0932	-	outer membrane protein F
872	 52.89	0	1004729..1006129	-	466	74311488	asnC	SSON_0933	-	asparaginyl-tRNA synthetase
873	 51.29	0	1006301..1007503	-	400	74311489	pncB	SSON_0934	-	nicotinate phosphoribosyltransferase
874	 53.69	0	1007769..1010381	+	870	74311490	pepN	SSON_0935	-	aminopeptidase N
875	 55.47	0	1010588..1011355	-	255	74311491	ssuB	SSON_0936	-	aliphatic sulfonates transport ATP-binding subunit
876	 55.56	0	1011352..1012143	-	263	74311492	ssuC	SSON_0937	-	alkanesulfonate transporter permease subunit
877	 52.29	0	1013299..1014258	-	319	161986559	ycbO	SSON_0939	-	alkanesulfonate transporter substrate-binding subunit
878	 54.17	0	1014251..1014826	-	191	74311494	ycbP	SSON_0940	-	NAD(P)H-dependent FMN reductase
879	 54.37	0	1015398..1015901	+	167	74311495	-	SSON_0941	-	IS1 ORF
880	 43.48	-1	1015950..1016501	+	183