IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
850	 49.18	0	975948..976736	+	262	74311466	ycaL	SSON_0911	-	putative heat shock protein
851	 53.36	0	976909..977592	+	227	74311467	cmk	SSON_0912	-	cytidylate kinase
852	 50.96	0	977703..979376	+	557	74311468	rpsA	SSON_0913	-	30S ribosomal protein S1
853	 49.12	0	979536..979820	+	94	74311469	ihfB	SSON_0914	-	integration host factor subunit beta
854	 49.76	0	980027..982291	+	754	161986560	ycaI	SSON_0915	-	hypothetical protein
855	 50.77	0	982328..984076	+	582	74311471	msbA	SSON_0916	-	lipid transporter ATP-binding/permease protein
856	 54.81	0	984073..985059	+	328	74311472	lpxK	SSON_0917	-	tetraacyldisaccharide 4'-kinase
857	 52.15	0	985096..986328	+	410	74311473	ycaQ	SSON_0918	-	hypothetical protein
858	 47.54	0	986380..986562	+	60	74311474	ycaR	SSON_0919	-	hypothetical protein
859	 52.74	0	986559..987305	+	248	74311475	kdsB	SSON_0920	-	3-deoxy-manno-octulosonate cytidylyltransferase
860	 52.46	0	987459..988352	+	297	74311476	-	SSON_0921	-	hypothetical protein
861	 52.31	0	988329..989108	-	259	74311477	ycbC	SSON_0922	-	hypothetical protein
862	 51.78	0	989244..990029	+	261	74311478	smtA	SSON_0923	-	putative metallothionein SmtA
863	 52.83	0	990026..991348	+	440	74311479	mukF	SSON_0924	-	condesin subunit F
864	 52.36	0	991356..992033	+	225	74311480	mukE	SSON_0925	-	condesin subunit E
865	 55.88	+1	992033..996493	+	1486