IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
843	 51.16	0	965541..967823	-	760	74311459	pflB	SSON_0904	-	formate acetyltransferase 1
844	 48.95	0	967878..968735	-	285	74311460	focA	SSON_0905	-	formate transporter
845	 51.02	0	969141..970910	-	589	74311461	ycaO	SSON_0906	-	hypothetical protein
846	 47.47	0	971031..971723	+	230	74311462	ycaP	SSON_0907	-	hypothetical protein
847	 50.41	0	971922..973010	+	362	74311463	serC	SSON_0908	-	phosphoserine aminotransferase
848	 50.55	0	973081..974364	+	427	74311464	aroA	SSON_0909	-	3-phosphoshikimate 1-carboxyvinyltransferase
849	 53.90	0	974490..975836	+	448	74311465	-	SSON_0910	-	IS4 orf
850	 49.18	0	975948..976736	+	262	74311466	ycaL	SSON_0911	-	putative heat shock protein
851	 53.36	0	976909..977592	+	227	74311467	cmk	SSON_0912	-	cytidylate kinase
852	 50.96	0	977703..979376	+	557	74311468	rpsA	SSON_0913	-	30S ribosomal protein S1
853	 49.12	0	979536..979820	+	94	74311469	ihfB	SSON_0914	-	integration host factor subunit beta
854	 49.76	0	980027..982291	+	754	161986560	ycaI	SSON_0915	-	hypothetical protein
855	 50.77	0	982328..984076	+	582	74311471	msbA	SSON_0916	-	lipid transporter ATP-binding/permease protein
856	 54.81	0	984073..985059	+	328	74311472	lpxK	SSON_0917	-	tetraacyldisaccharide 4'-kinase
857	 52.15	0	985096..986328	+	410	74311473	ycaQ	SSON_0918	-	hypothetical protein
858	 47.54	0	986380..986562	+	60