IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
838	 56.02	+1	957926..958789	+	287	74311454	dmsC	SSON_0897	-	anaerobic dimethyl sulfoxide reductase subunit C
839	 45.77	-1	958825..959451	-	208	74311455	ycaC	SSON_0898	-	hypothetical protein
840	 51.87	0	959766..960914	+	382	74311456	ycaD	SSON_0899	-	MFS family transporter
841	 54.37	0	963055..963558	+	167	74311457	-	SSON_0901	-	IS1 ORF
842	 50.20	0	964609..965349	-	246	74311458	pflA	SSON_0903	-	pyruvate formate lyase-activating enzyme 1
843	 51.16	0	965541..967823	-	760	74311459	pflB	SSON_0904	-	formate acetyltransferase 1
844	 48.95	0	967878..968735	-	285	74311460	focA	SSON_0905	-	formate transporter
845	 51.02	0	969141..970910	-	589	74311461	ycaO	SSON_0906	-	hypothetical protein
846	 47.47	0	971031..971723	+	230	74311462	ycaP	SSON_0907	-	hypothetical protein
847	 50.41	0	971922..973010	+	362	74311463	serC	SSON_0908	-	phosphoserine aminotransferase
848	 50.55	0	973081..974364	+	427	74311464	aroA	SSON_0909	-	3-phosphoshikimate 1-carboxyvinyltransferase
849	 53.90	0	974490..975836	+	448	74311465	-	SSON_0910	-	IS4 orf
850	 49.18	0	975948..976736	+	262	74311466	ycaL	SSON_0911	-	putative heat shock protein
851	 53.36	0	976909..977592	+	227	74311467	cmk	SSON_0912	-	cytidylate kinase
852	 50.96	0	977703..979376	+	557	74311468	rpsA	SSON_0913	-	30S ribosomal protein S1
853	 49.12	0	979536..979820	+	94