version 1.0
Shigella sonnei Ss046, complete genome - 1..4825265 4219 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 833 50.73 0 951262..951876 + 204 74311449 lolA SSON_0892 - outer-membrane lipoprotein carrier protein 834 53.72 0 951887..953230 + 447 74311450 ycaJ SSON_0893 - recombination factor protein RarA 835 52.82 0 953321..954613 + 430 74311451 serS SSON_0894 - seryl-tRNA synthetase 836 52.59 0 954939..957296 + 785 74311452 dmsA SSON_0895 - anaerobic dimethyl sulfoxide reductase subunit A 837 51.94 0 957307..957924 + 205 74311453 dmsB SSON_0896 - anaerobic dimethyl sulfoxide reductase subunit B 838 56.02 +1 957926..958789 + 287 74311454 dmsC SSON_0897 - anaerobic dimethyl sulfoxide reductase subunit C 839 45.77 -1 958825..959451 - 208 74311455 ycaC SSON_0898 - hypothetical protein 840 51.87 0 959766..960914 + 382 74311456 ycaD SSON_0899 - MFS family transporter 841 54.37 0 963055..963558 + 167 74311457 - SSON_0901 - IS1 ORF 842 50.20 0 964609..965349 - 246 74311458 pflA SSON_0903 - pyruvate formate lyase-activating enzyme 1 843 51.16 0 965541..967823 - 760 74311459 pflB SSON_0904 - formate acetyltransferase 1 844 48.95 0 967878..968735 - 285 74311460 focA SSON_0905 - formate transporter 845 51.02 0 969141..970910 - 589 74311461 ycaO SSON_0906 - hypothetical protein 846 47.47 0 971031..971723 + 230 74311462 ycaP SSON_0907 - hypothetical protein 847 50.41 0 971922..973010 + 362 74311463 serC SSON_0908 - phosphoserine aminotransferase 848 50.55 0 973081..974364 + 427 74311464 aroA SSON_0909 - 3-phosphoshikimate 1-carboxyvinyltransferase 849 53.90 0 974490..975836 + 448 74311465 - SSON_0910 - IS4 orf 850 49.18 0 975948..976736 + 262 74311466 ycaL SSON_0911 - putative heat shock protein 851 53.36 0 976909..977592 + 227 74311467 cmk SSON_0912 - cytidylate kinase 852 50.96 0 977703..979376 + 557 74311468 rpsA SSON_0913 - 30S ribosomal protein S1 853 49.12 0 979536..979820 + 94 74311469 ihfB SSON_0914 - integration host factor subunit beta 854 49.76 0 980027..982291 + 754 161986560 ycaI SSON_0915 - hypothetical protein 855 50.77 0 982328..984076 + 582 74311471 msbA SSON_0916 - lipid transporter ATP-binding/permease protein 856 54.81 0 984073..985059 + 328 74311472 lpxK SSON_0917 - tetraacyldisaccharide 4'-kinase 857 52.15 0 985096..986328 + 410 74311473 ycaQ SSON_0918 - hypothetical protein 858 47.54 0 986380..986562 + 60 74311474 ycaR SSON_0919 - hypothetical protein 859 52.74 0 986559..987305 + 248 74311475 kdsB SSON_0920 - 3-deoxy-manno-octulosonate cytidylyltransferase 860 52.46 0 987459..988352 + 297 74311476 - SSON_0921 - hypothetical protein 861 52.31 0 988329..989108 - 259 74311477 ycbC SSON_0922 - hypothetical protein 862 51.78 0 989244..990029 + 261 74311478 smtA SSON_0923 - putative metallothionein SmtA 863 52.83 0 990026..991348 + 440 74311479 mukF SSON_0924 - condesin subunit F 864 52.36 0 991356..992033 + 225 74311480 mukE SSON_0925 - condesin subunit E 865 55.88 +1 992033..996493 + 1486 74311481 mukB SSON_0926 - cell division protein MukB 866 53.90 0 996638..997984 + 448 74311482 - SSON_0927 - IS4 orf 867 53.19 0 998192..1000039 + 615 74311483 ycbB SSON_0928 - hypothetical protein 868 49.73 0 1000220..1000768 + 182 74311484 ycbK SSON_0929 - hypothetical protein 869 51.54 0 1000795..1001442 + 215 74311485 ycbL SSON_0930 - hypothetical protein 870 52.23 0 1001664..1002854 - 396 74311486 aspC SSON_0931 - aromatic amino acid aminotransferase 871 47.84 0 1003039..1004127 - 362 74311487 ompF SSON_0932 - outer membrane protein F 872 52.89 0 1004729..1006129 - 466 74311488 asnC SSON_0933 - asparaginyl-tRNA synthetase 873 51.29 0 1006301..1007503 - 400 74311489 pncB SSON_0934 - nicotinate phosphoribosyltransferase 874 53.69 0 1007769..1010381 + 870 74311490 pepN SSON_0935 - aminopeptidase N 875 55.47 0 1010588..1011355 - 255 74311491 ssuB SSON_0936 - aliphatic sulfonates transport ATP-binding subunit 876 55.56 0 1011352..1012143 - 263 74311492 ssuC SSON_0937 - alkanesulfonate transporter permease subunit 877 52.29 0 1013299..1014258 - 319 161986559 ycbO SSON_0939 - alkanesulfonate transporter substrate-binding subunit 878 54.17 0 1014251..1014826 - 191 74311494 ycbP SSON_0940 - NAD(P)H-dependent FMN reductase 879 54.37 0 1015398..1015901 + 167 74311495 - SSON_0941 - IS1 ORF 880 43.48 -1 1015950..1016501 + 183 74311496 ycbQ SSON_0942 - putative fimbrial-like protein 881 45.16 -1 1016584..1017285 + 233 74311497 ycbR SSON_0943 - putative chaperone 882 48.55 0 1019900..1020970 + 356 74311498 - SSON_0945 - FimH-like protein 883 46.96 -1 1020982..1021524 + 180 74311499 - SSON_0946 - putative fimbrial-like protein 884 47.70 0 1021484..1022047 + 187 74311500 - SSON_0947 - putative fimbrial-like protein 885 51.90 0 1022013..1022750 + 245 74311501 ycbF SSON_0948 - hypotheical protein 886 46.98 -1 1022861..1023871 + 336 74311502 pyrD SSON_0949 - dihydroorotate dehydrogenase 2 887 49.74 0 1024009..1024587 + 192 74311503 ycbW SSON_0950 - hypothetical protein 888 50.45 0 1024584..1025693 - 369 74311504 - SSON_0951 - hypothetical protein 889 54.24 0 1025937..1028045 + 702 74311505 ycbY SSON_0952 - 23S rRNA m(2)G2445 methyltransferase 890 52.62 0 1028057..1029964 + 635 74311506 uup SSON_0953 - ABC transporter ATPase component 891 52.15 0 1030094..1031347 + 417 74311507 pqiA SSON_0954 - paraquat-inducible protein A 892 49.91 0 1031352..1032992 + 546 74311508 pqiB SSON_0955 - paraquat-inducible protein B 893 52.28 0 1033004..1033552 + 182 74311509 ymbA SSON_0956 - hypothetical protein 894 54.17 0 1033808..1033975 + 55 74311510 rmf SSON_0957 - ribosome modulation factor 895 52.22 0 1034045..1034563 - 172 74311511 fabA SSON_0958 - 3-hydroxydecanoyl-(acyl carrier protein) dehydratase 896 51.85 0 1034632..1036392 - 586 74311512 - SSON_0959 - putative ATP-dependent protease 897 46.36 -1 1036578..1037030 + 150 74311513 ycbG SSON_0960 - hypothetical protein 898 53.79 0 1037106..1038146 - 346 74311514 ompA SSON_0961 - outer membrane protein A 899 48.24 0 1038501..1039010 - 169 74311515 sulA SSON_0962 - SOS cell division inhibitor 900 48.10 0 1039229..1039858 + 209 74311516 - SSON_0963 - hypothetical protein 901 52.15 0 1039821..1041983 - 720 74311517 - SSON_0964 - hypothetical protein 902 48.10 0 1041993..1042439 - 148 74311518 yccF SSON_0965 - hypothetical protein 903 52.85 0 1042562..1044616 + 684 74311519 helD SSON_0966 - DNA helicase IV 904 52.51 0 1044648..1045106 - 152 161986558 mgsA SSON_0967 - methylglyoxal synthase 905 50.53 0 1045202..1045864 - 220 74311521 - SSON_0968 - hypothetical protein 906 54.17 0 1045942..1046445 - 167 74311522 - SSON_0969 - IS1 ORF 907 53.13 0 1046733..1047227 + 164 74311523 - SSON_0970 - hypothetical protein 908 53.39 0 1047272..1047640 - 122 74311524 yccV SSON_0971 - hypothetical protein 909 52.69 0 1048932..1049210 + 92 74311525 - SSON_0973 - hypothetical protein 910 46.67 -1 1049207..1049536 - 109 161986557 yccK SSON_0974 - sulfurtransferase TusE 911 51.06 0 1049627..1050286 - 219 74311527 yccA SSON_0975 - hypothetical protein 912 53.68 0 1051003..1051587 + 194 74311528 - SSON_0977 - IS1 ORF 913 55.94 +1 1051783..1052901 + 372 74311529 hyaA SSON_0978 - hydrogenase-1 small subunit 914 56.52 +1 1052898..1054691 + 597 74311530 hyaB SSON_0979 - hydrogenase 1 large subunit 915 58.16 +1 1055413..1056000 + 195 74311531 hyaD SSON_0981 - hydrogenase 1 maturation protease 916 55.46 0 1055997..1056335 + 112 74311532 hyaE SSON_0982 - hydrogenase-1 operon protein HyaE 917 55.01 0 1056392..1057249 + 285 74311533 hyaF SSON_0983 - nickel incorporation into hydrogenase-1 proteins 918 53.85 0 1057383..1058927 + 514 74311534 appC SSON_0984 - third cytochrome oxidase, subunit I 919 53.21 0 1058939..1060075 + 378 74311535 appB SSON_0985 - third cytochrome oxidase, subunit II 920 46.24 -1 1060088..1060180 + 30 74311536 yccB SSON_0986 - hypothetical protein 921 53.89 0 1060260..1061558 + 432 74311537 appA SSON_0987 - phosphoanhydride phosphorylase 922 50.57 0 1061673..1063853 - 726 74311538 yccC SSON_0988 - cryptic autophosphorylating protein tyrosine kinase Etk 923 51.90 0 1063873..1064319 - 148 161986556 etp SSON_0989 - phosphotyrosine-protein phosphatase 924 50.96 0 1064307..1065446 - 379 74311540 yccZ SSON_0990 - putative function in exopolysaccharide production 925 52.03 0 1065492..1067588 - 698 74311541 ymcA SSON_0991 - hypothetical protein 926 52.21 0 1067588..1068334 - 248 74311542 ymcB SSON_0992 - hypothetical protein 927 47.75 0 1068331..1068975 - 214 74311543 ymcC SSON_0993 - putative regulator 928 55.25 0 1069082..1069405 - 107 74311544 ymcD SSON_0994 - hypothetical protein 929 46.95 -1 1069834..1070046 - 70 74311545 cspH SSON_0995 - cold shock-like protein 930 54.37 0 1070143..1070646 - 167 74311546 - SSON_0996 - IS1 ORF 931 44.13 -1 1071109..1071321 + 70 74311547 cspG SSON_0997 - cold shock protein CspG 932 41.56 -2 1071495..1071725 + 76 74311548 sfa SSON_0998 - cold shock gene 51.65 MEAN 4.20 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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