IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
833	 50.73	0	951262..951876	+	204	74311449	lolA	SSON_0892	-	outer-membrane lipoprotein carrier protein
834	 53.72	0	951887..953230	+	447	74311450	ycaJ	SSON_0893	-	recombination factor protein RarA
835	 52.82	0	953321..954613	+	430	74311451	serS	SSON_0894	-	seryl-tRNA synthetase
836	 52.59	0	954939..957296	+	785	74311452	dmsA	SSON_0895	-	anaerobic dimethyl sulfoxide reductase subunit A
837	 51.94	0	957307..957924	+	205	74311453	dmsB	SSON_0896	-	anaerobic dimethyl sulfoxide reductase subunit B
838	 56.02	+1	957926..958789	+	287	74311454	dmsC	SSON_0897	-	anaerobic dimethyl sulfoxide reductase subunit C
839	 45.77	-1	958825..959451	-	208	74311455	ycaC	SSON_0898	-	hypothetical protein
840	 51.87	0	959766..960914	+	382	74311456	ycaD	SSON_0899	-	MFS family transporter
841	 54.37	0	963055..963558	+	167	74311457	-	SSON_0901	-	IS1 ORF
842	 50.20	0	964609..965349	-	246	74311458	pflA	SSON_0903	-	pyruvate formate lyase-activating enzyme 1
843	 51.16	0	965541..967823	-	760	74311459	pflB	SSON_0904	-	formate acetyltransferase 1
844	 48.95	0	967878..968735	-	285	74311460	focA	SSON_0905	-	formate transporter
845	 51.02	0	969141..970910	-	589	74311461	ycaO	SSON_0906	-	hypothetical protein
846	 47.47	0	971031..971723	+	230	74311462	ycaP	SSON_0907	-	hypothetical protein
847	 50.41	0	971922..973010	+	362	74311463	serC	SSON_0908	-	phosphoserine aminotransferase
848	 50.55	0	973081..974364	+	427