IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
828	 53.83	0	941293..943014	-	573	74311444	cydC	SSON_0887	-	cysteine/glutathione ABC transporter membrane/ATP-binding component
829	 53.25	0	943015..944781	-	588	74311445	cydD	SSON_0888	-	cysteine/glutathione ABC transporter membrane/ATP-binding component
830	 53.31	0	944904..945869	-	321	74311446	trxB	SSON_0889	-	thioredoxin reductase
831	 47.27	-1	946414..946908	+	164	74311447	lrp	SSON_0890	-	leucine-responsive transcriptional regulator
832	 53.96	0	947043..951110	+	1355	74311448	ftsK	SSON_0891	-	DNA translocase FtsK
833	 50.73	0	951262..951876	+	204	74311449	lolA	SSON_0892	-	outer-membrane lipoprotein carrier protein
834	 53.72	0	951887..953230	+	447	74311450	ycaJ	SSON_0893	-	recombination factor protein RarA
835	 52.82	0	953321..954613	+	430	74311451	serS	SSON_0894	-	seryl-tRNA synthetase
836	 52.59	0	954939..957296	+	785	74311452	dmsA	SSON_0895	-	anaerobic dimethyl sulfoxide reductase subunit A
837	 51.94	0	957307..957924	+	205	74311453	dmsB	SSON_0896	-	anaerobic dimethyl sulfoxide reductase subunit B
838	 56.02	+1	957926..958789	+	287	74311454	dmsC	SSON_0897	-	anaerobic dimethyl sulfoxide reductase subunit C
839	 45.77	-1	958825..959451	-	208	74311455	ycaC	SSON_0898	-	hypothetical protein
840	 51.87	0	959766..960914	+	382	74311456	ycaD	SSON_0899	-	MFS family transporter
841	 54.37	0	963055..963558	+	167	74311457	-	SSON_0901	-	IS1 ORF
842	 50.20	0	964609..965349	-	246	74311458	pflA	SSON_0903	-	pyruvate formate lyase-activating enzyme