IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
820	 48.88	0	932598..933356	+	252	74311436	-	SSON_0878	-	unknown protein encoded within prophage
821	 55.28	0	933615..933860	+	81	74311437	-	SSON_0879	-	hypothetical protein
822	 53.03	0	933947..935119	+	390	74311438	-	SSON_0880	-	IS21 ORF1
823	 52.63	0	935119..935916	+	265	74311439	-	SSON_0881	-	IS21 ORF2
824	 45.17	-1	936670..936990	+	106	74311440	clpS	SSON_0882	-	ATP-dependent Clp protease adaptor protein ClpS
825	 52.79	0	937021..939297	+	758	74311441	clpA	SSON_0883	-	ATP-dependent Clp protease ATP-binding subunit
826	 48.40	0	940044..940262	-	72	74311442	infA	SSON_0885	-	translation initiation factor IF-1
827	 53.48	0	940547..941251	-	234	74311443	aat	SSON_0886	-	leucyl/phenylalanyl-tRNA--protein transferase
828	 53.83	0	941293..943014	-	573	74311444	cydC	SSON_0887	-	cysteine/glutathione ABC transporter membrane/ATP-binding component
829	 53.25	0	943015..944781	-	588	74311445	cydD	SSON_0888	-	cysteine/glutathione ABC transporter membrane/ATP-binding component
830	 53.31	0	944904..945869	-	321	74311446	trxB	SSON_0889	-	thioredoxin reductase
831	 47.27	-1	946414..946908	+	164	74311447	lrp	SSON_0890	-	leucine-responsive transcriptional regulator
832	 53.96	0	947043..951110	+	1355	74311448	ftsK	SSON_0891	-	DNA translocase FtsK
833	 50.73	0	951262..951876	+	204	74311449	lolA	SSON_0892	-	outer-membrane lipoprotein carrier protein
834	 53.72	0	951887..953230	+	447	74311450	ycaJ	SSON_0893	-	recombination factor protein RarA
835	 52.82	0	9533